Rroxscaffold_2G00112250

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
37259975 .. 37263022
3048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00112250.1

Sequence Viewer

Length: 1089 bp
ATGGCGAAAACCTCACAGAAGATCCAAAAGAATACAACTCCAAGCTCTAGCAATAATAGCAACACCACCTCTAGTACTACTACTAGTAGTCCTCCGGCCACCAAGGTCAAGCGGACGCGTAAAAGTGTACGCCGCGACTCTCCGCCTCAGCGGAGCTCCATCTACAGAGGAGTCACAAGGCATCGATGGACGGGTAGGTATGAAGCTCATTTGTGGGATAAGAACTGTTGGAATGAGTCACAGAACAAGAAAGGAAGACAAGTCTATTTAGGGGCATATGATGATGAAGAAGCTGCTGCACGCGCCTATGACTTGGCGGCATTAAAGTACTGGGGACAAGATACAATCCTCAATTTGCCAGTTTCCACCTATGAGGAAGAGCTCAAAGAAATGGACGGTCAGTCTAAAGAAGAATACATTGGATCGTTGAGGAGGAAGAGTAGTGGATTTTCTCGTGGCGTTTCAAAATATAGAGGCGTAGCCAGACACCACCATAATGGAAGATGGGAGGCTCGAATTGGAAGAGTATTTGGAAACAAATATCTCTACCTTGGAACCTATGCAACGCAAGAAGAAGCAGCTACAGCTTACGACATGGCAGCAATAGAGTATCGTGGACTTAATGCCGTAACGAACTTCGATCTTAGCCGTTACATCAAGTCACTGTGCCCCAATAATGAGAACGTTCCCAACAACACGCAACCAAACCCTAATGCTGACCTCATTTCGATTCAAAACCCTGATTCCAAGGTAGGGTTAGGGTTTATGCCCCACAACCCGAGTCCGAGCACTAGCGAGTCAATGGTAGCAGTGCCACTGCCGGGGAATGGTTCGTCGGCGTCATCTGCACTAGGGCTTTTATTGCAGTCCCCTAAGTTCAAGGAAATGCTCGAGAGGACGTCAGTGGCAGACTGCTCGTCGACGACGTCTTCGGAGCCAAACATGCCGCGCCGGAGTTTCCCCGATGACATTCAAACGTACTTTGATTGCCAAGATTTGAATTGCTATGCAGAAGGAGACGACATTATCTTCGGGGAGTTAAACTCATTTGCTAATTCACCTGTTTTTCATTGTGAACTTGATGCCTGA

Protein Analysis

362

Amino Acids

40.39

Weight (kDa)

8.1

Isoelectric Point (pI)

57.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 55 - 112 2.1e-11 AP2 domain
AP2 PF00847 155 - 206 2.1e-11 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 902, 929
AccI GTMKAC 1 cut(s) 920
AccII CGCG 4 cut(s) 118, 135, 303, 949
AciI CCGC 6 cut(s) 112, 133, 143, 151, 317, 947
AclI AACGTT 1 cut(s) 684
AclWI GGATC 2 cut(s) 16, 430
AcoI YGGCCR 1 cut(s) 96
AcyI GRCGYC 3 cut(s) 839, 899, 926
AfaI GTAC 4 cut(s) 76, 129, 329, 980
AfiI CCNNNNNNNGG 3 cut(s) 753, 821, 827
AflIII ACRYGT 1 cut(s) 116
AgsI TTSAA 5 cut(s) 465, 734, 880, 974, 1000
AhdI GACNNNNNGTC 2 cut(s) 400, 916
AhlI ACTAGT 1 cut(s) 83
AjuI GAANNNNNNNTTGG 2 cut(s) 402, 434
AluBI AGCT 7 cut(s) 45, 156, 206, 293, 382, 581, 587
AluI AGCT 7 cut(s) 45, 156, 206, 293, 382, 581, 587
Alw21I GWGCWC 3 cut(s) 158, 384, 791
Alw26I GTCTC 1 cut(s) 1011
AlwI GGATC 2 cut(s) 16, 430
Ama87I CYCGRG 2 cut(s) 778, 890
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 4 cut(s) 293, 296, 578, 599
ArsI GACNNNNNNTTYG 4 cut(s) 913, 945, 1013, 1045
AspLEI GCGC 2 cut(s) 305, 951
AsuC2I CCSGG 1 cut(s) 822
AsuHPI GGTGA 1 cut(s) 1050
AvaI CYCGRG 2 cut(s) 778, 890
BaeGI GKGCMC 1 cut(s) 671
BanII GRGCYC 2 cut(s) 158, 384
BauI CACGAG 1 cut(s) 453
BbsI GAAGAC 2 cut(s) 262, 921
Bbv12I GWGCWC 3 cut(s) 158, 384, 791
BbvCI CCTCAGC 1 cut(s) 147
BbvI GCAGC 4 cut(s) 280, 283, 590, 611
BccI CCATC 3 cut(s) 167, 180, 498
BceAI ACGGC 2 cut(s) 611, 633
BcgI CGANNNNNNTGC 2 cut(s) 897, 931
BcnI CCSGG 1 cut(s) 822
BcoDI GTCTC 1 cut(s) 1011
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 5 cut(s) 48, 72, 84, 792, 851
BfmI CTRYAG 2 cut(s) 163, 582
BisI GCNGC 7 cut(s) 133, 294, 297, 318, 579, 600, 947
BlsI GCNGC 7 cut(s) 134, 295, 298, 319, 580, 601, 948
BmcAI AGTACT 2 cut(s) 76, 329
Bme1390I CCNGG 1 cut(s) 822
BmeRI GACNNNNNGTC 2 cut(s) 400, 916
BmeT110I CYCGRG 2 cut(s) 778, 890
BmiI GGNNCC 2 cut(s) 556, 936
BmrFI CCNGG 1 cut(s) 822
BmrI ACTGGG 1 cut(s) 340
BmsI GCATC 2 cut(s) 190, 1072
BmuI ACTGGG 1 cut(s) 340
BpiI GAAGAC 2 cut(s) 262, 921
BplI GAGNNNNNCTC 2 cut(s) 1028, 1060
Bpu10I CCTNAGC 1 cut(s) 147
BpuMI CCSGG 1 cut(s) 822
Bsa29I ATCGAT 1 cut(s) 184
BsaHI GRCGYC 3 cut(s) 839, 899, 926
BsaJI CCNNGG 4 cut(s) 102, 550, 747, 821
BsaXI ACNNNNNCTCC 2 cut(s) 424, 454
Bsc4I CCNNNNNNNGG 3 cut(s) 753, 821, 827
Bse1I ACTGG 2 cut(s) 335, 359
BseCI ATCGAT 1 cut(s) 184
BseDI CCNNGG 4 cut(s) 102, 550, 747, 821
BseLI CCNNNNNNNGG 3 cut(s) 753, 821, 827
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 2 cut(s) 335, 359
BseRI GAGGAG 2 cut(s) 183, 445
BseSI GKGCMC 1 cut(s) 671
BseXI GCAGC 4 cut(s) 280, 283, 590, 611
BsgI GTGCAG 2 cut(s) 282, 831
Bsh1236I CGCG 4 cut(s) 118, 135, 303, 949
BshFI GGCC 1 cut(s) 98
BshVI ATCGAT 1 cut(s) 184
BsiHKAI GWGCWC 3 cut(s) 158, 384, 791
BsiHKCI CYCGRG 2 cut(s) 778, 890
BsiSI CCGG 3 cut(s) 95, 821, 952
BslFI GGGAC 2 cut(s) 348, 853
BslI CCNNNNNNNGG 3 cut(s) 753, 821, 827
BsmAI GTCTC 1 cut(s) 1011
BsmBI CGTCTC 1 cut(s) 1011
BsmFI GGGAC 2 cut(s) 348, 853
BsnI GGCC 1 cut(s) 98
BsoBI CYCGRG 2 cut(s) 778, 890
Bsp1286I GDGCHC 4 cut(s) 158, 384, 671, 791
Bsp143I GATC 3 cut(s) 21, 422, 640
BspACI CCGC 6 cut(s) 112, 133, 143, 151, 317, 947
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 160
BspDI ATCGAT 1 cut(s) 184
BspFNI CGCG 4 cut(s) 118, 135, 303, 949
BspLI GGNNCC 2 cut(s) 556, 936
BspPI GGATC 2 cut(s) 16, 430
BspQI GCTCTTC 1 cut(s) 372
BsrI ACTGG 2 cut(s) 335, 359
BssECI CCNNGG 4 cut(s) 102, 550, 747, 821
BssMI GATC 3 cut(s) 21, 422, 640
BssNI GRCGYC 3 cut(s) 839, 899, 926
BssSI CACGAG 1 cut(s) 453
BssT1I CCWWGG 3 cut(s) 102, 550, 747
Bst2BI CACGAG 1 cut(s) 453
Bst4CI ACNGT 3 cut(s) 227, 398, 666
Bst6I CTCTTC 3 cut(s) 372, 431, 517
BstACI GRCGYC 3 cut(s) 839, 899, 926
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 3 cut(s) 147, 644, 873
BstFNI CGCG 4 cut(s) 118, 135, 303, 949
BstHHI GCGC 2 cut(s) 305, 951
BstKTI GATC 3 cut(s) 24, 425, 643
BstMAI GTCTC 1 cut(s) 1011
BstMBI GATC 3 cut(s) 21, 422, 640
BstMWI GCNNNNNNNGC 6 cut(s) 57, 302, 584, 845, 862, 943
BstNSI RCATGY 1 cut(s) 946
BstSCI CCNGG 1 cut(s) 820
BstSFI CTRYAG 2 cut(s) 163, 582
BstSLI GKGCMC 1 cut(s) 671
BstUI CGCG 4 cut(s) 118, 135, 303, 949
BstV1I GCAGC 4 cut(s) 280, 283, 590, 611
BstV2I GAAGAC 2 cut(s) 262, 921
BstX2I RGATCY 1 cut(s) 21
BstXI CCANNNNNNTGG 1 cut(s) 497
BstYI RGATCY 1 cut(s) 21
Bsu15I ATCGAT 1 cut(s) 184
BsuRI GGCC 1 cut(s) 98
BsuTUI ATCGAT 1 cut(s) 184
BtsI GCAGTG 2 cut(s) 815, 816
BtsIMutI CAGTG 4 cut(s) 662, 815, 816, 909
Cac8I GCNNGC 1 cut(s) 301
CfoI GCGC 2 cut(s) 305, 951
ClaI ATCGAT 1 cut(s) 184
CseI GACGC 2 cut(s) 124, 828
Csp6I GTAC 4 cut(s) 75, 128, 328, 979
CviAII CATG 2 cut(s) 595, 943
CviQI GTAC 4 cut(s) 75, 128, 328, 979
DdeI CTNAG 3 cut(s) 147, 644, 873
DpnI GATC 3 cut(s) 23, 424, 642
DpnII GATC 3 cut(s) 21, 422, 640
DriI GACNNNNNGTC 2 cut(s) 400, 916
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 3 cut(s) 372, 431, 517
Eam1105I GACNNNNNGTC 2 cut(s) 400, 916
EarI CTCTTC 3 cut(s) 372, 431, 517
EciI GGCGGA 1 cut(s) 132
Ecl136II GAGCTC 2 cut(s) 156, 382
Eco130I CCWWGG 3 cut(s) 102, 550, 747
Eco24I GRGCYC 2 cut(s) 158, 384
Eco53kI GAGCTC 2 cut(s) 156, 382
Eco88I CYCGRG 2 cut(s) 778, 890
EcoICRI GAGCTC 2 cut(s) 156, 382
EcoT14I CCWWGG 3 cut(s) 102, 550, 747
EcoT38I GRGCYC 2 cut(s) 158, 384
ErhI CCWWGG 3 cut(s) 102, 550, 747
Esp3I CGTCTC 1 cut(s) 1011
FaeI CATG 2 cut(s) 598, 946
FaqI GGGAC 2 cut(s) 348, 853
FatI CATG 2 cut(s) 594, 942
FauNDI CATATG 1 cut(s) 277
FblI GTMKAC 1 cut(s) 920
Fnu4HI GCNGC 7 cut(s) 133, 294, 297, 318, 579, 600, 947
FriOI GRGCYC 2 cut(s) 158, 384
Fsp4HI GCNGC 7 cut(s) 133, 294, 297, 318, 579, 600, 947
FspBI CTAG 5 cut(s) 48, 72, 84, 792, 851
GlaI GCGC 2 cut(s) 304, 950
GluI GCNGC 7 cut(s) 133, 294, 297, 318, 579, 600, 947
HaeIII GGCC 1 cut(s) 98
HapII CCGG 3 cut(s) 95, 821, 952
HgaI GACGC 2 cut(s) 124, 828
HhaI GCGC 2 cut(s) 305, 951
Hin1I GRCGYC 3 cut(s) 839, 899, 926
Hin1II CATG 2 cut(s) 598, 946
Hin6I GCGC 2 cut(s) 303, 949
HinP1I GCGC 2 cut(s) 303, 949
HincII GTYRAC 1 cut(s) 921
HindII GTYRAC 1 cut(s) 921
HinfI GANTC 7 cut(s) 137, 171, 236, 730, 743, 781, 797
HpaII CCGG 3 cut(s) 95, 821, 952
HphI GGTGA 1 cut(s) 1050
Hpy166II GTNNAC 4 cut(s) 128, 617, 921, 1076
Hpy188I TCNGA 2 cut(s) 786, 934
Hpy188III TCNNGA 1 cut(s) 892
Hpy8I GTNNAC 4 cut(s) 128, 617, 921, 1076
Hpy99I CGWCG 4 cut(s) 838, 922, 925, 928
HpyAV CCTTC 1 cut(s) 1007
HpyCH4III ACNGT 3 cut(s) 227, 398, 666
HpyCH4IV ACGT 4 cut(s) 684, 899, 926, 977
HpyCH4V TGCA 5 cut(s) 299, 563, 848, 865, 1010
HpyF10VI GCNNNNNNNGC 6 cut(s) 57, 302, 584, 845, 862, 943
HpyF3I CTNAG 3 cut(s) 147, 644, 873
HpySE526I ACGT 4 cut(s) 684, 899, 926, 977
Hsp92I GRCGYC 3 cut(s) 839, 899, 926
Hsp92II CATG 2 cut(s) 598, 946
HspAI GCGC 2 cut(s) 303, 949
Kzo9I GATC 3 cut(s) 21, 422, 640
LguI GCTCTTC 1 cut(s) 372
LmnI GCTCC 3 cut(s) 153, 161, 934
LpnPI CCDG 8 cut(s) 108, 316, 372, 496, 753, 834, 965, 1074
Lsp1109I GCAGC 4 cut(s) 280, 283, 590, 611
LweI GCATC 2 cut(s) 190, 1072
MaeI CTAG 5 cut(s) 48, 72, 84, 792, 851
MaeII ACGT 4 cut(s) 684, 899, 926, 977
MaeIII GTNAC 5 cut(s) 172, 237, 628, 650, 660
MalI GATC 3 cut(s) 23, 424, 642
MboI GATC 3 cut(s) 21, 422, 640
MflI RGATCY 1 cut(s) 21
MhlI GDGCHC 4 cut(s) 158, 384, 671, 791
MluCI AATT 4 cut(s) 352, 516, 1000, 1054
MluI ACGCGT 1 cut(s) 116
MlyI GAGTC 5 cut(s) 131, 180, 245, 790, 806
MmeI TCCRAC 1 cut(s) 209
MseI TTAA 3 cut(s) 323, 621, 1040
MslI CAYNNNNRTG 1 cut(s) 495
MspA1I CMGCKG 1 cut(s) 151
MspI CCGG 3 cut(s) 95, 821, 952
MspR9I CCNGG 1 cut(s) 822
MvnI CGCG 4 cut(s) 118, 135, 303, 949
MwoI GCNNNNNNNGC 6 cut(s) 57, 302, 584, 845, 862, 943
NciI CCSGG 1 cut(s) 822
NdeI CATATG 1 cut(s) 277
NdeII GATC 3 cut(s) 21, 422, 640
NlaIII CATG 2 cut(s) 598, 946
NlaIV GGNNCC 2 cut(s) 556, 936
NmuCI GTSAC 3 cut(s) 172, 237, 660
NspI RCATGY 1 cut(s) 946
PaeR7I CTCGAG 1 cut(s) 890
PciSI GCTCTTC 1 cut(s) 372
PcsI WCGNNNNNNNCGW 1 cut(s) 923
PfeI GAWTC 2 cut(s) 730, 743
PflFI GACNNNGTC 1 cut(s) 925
PkrI GCNGC 7 cut(s) 134, 295, 298, 319, 580, 601, 948
PleI GAGTC 5 cut(s) 131, 179, 244, 789, 805
PpsI GAGTC 5 cut(s) 131, 179, 244, 789, 805
Psp124BI GAGCTC 2 cut(s) 158, 384
Psp1406I AACGTT 1 cut(s) 684
PspN4I GGNNCC 2 cut(s) 556, 936
PsuI RGATCY 1 cut(s) 21
PsyI GACNNNGTC 1 cut(s) 925
RsaI GTAC 4 cut(s) 76, 129, 329, 980
RsaNI GTAC 4 cut(s) 75, 128, 328, 979
RseI CAYNNNNRTG 1 cut(s) 495
SacI GAGCTC 2 cut(s) 158, 384
SalI GTCGAC 1 cut(s) 919
SapI GCTCTTC 1 cut(s) 372
SaqAI TTAA 3 cut(s) 323, 621, 1040
SatI GCNGC 7 cut(s) 133, 294, 297, 318, 579, 600, 947
Sau3AI GATC 3 cut(s) 21, 422, 640
ScaI AGTACT 2 cut(s) 76, 329
SchI GAGTC 5 cut(s) 131, 180, 245, 790, 806
ScrFI CCNGG 1 cut(s) 822
SduI GDGCHC 4 cut(s) 158, 384, 671, 791
SfaNI GCATC 2 cut(s) 190, 1072
SfcI CTRYAG 2 cut(s) 163, 582
Sfr274I CTCGAG 1 cut(s) 890
SgrDI CGTCGACG 1 cut(s) 919
SlaI CTCGAG 1 cut(s) 890
SmiMI CAYNNNNRTG 1 cut(s) 495
SmlI CTYRAG 1 cut(s) 890
SmoI CTYRAG 1 cut(s) 890
SpeI ACTAGT 1 cut(s) 83
Sse9I AATT 4 cut(s) 352, 516, 1000, 1054
SsiI CCGC 6 cut(s) 112, 133, 143, 151, 317, 947
SspMI CTAG 5 cut(s) 48, 72, 84, 792, 851
SstI GAGCTC 2 cut(s) 158, 384
StyD4I CCNGG 1 cut(s) 820
StyI CCWWGG 3 cut(s) 102, 550, 747
TaaI ACNGT 3 cut(s) 227, 398, 666
TaiI ACGT 4 cut(s) 687, 902, 929, 980
TaqI TCGA 6 cut(s) 184, 514, 639, 728, 891, 920
TasI AATT 4 cut(s) 352, 516, 1000, 1054
TatI WGTACW 2 cut(s) 74, 327
TauI GCSGC 3 cut(s) 135, 320, 949
TfiI GAWTC 2 cut(s) 730, 743
Tru1I TTAA 3 cut(s) 323, 621, 1040
Tru9I TTAA 3 cut(s) 323, 621, 1040
TscAI CASTG 4 cut(s) 669, 816, 822, 909
TseFI GTSAC 3 cut(s) 172, 237, 660
TseI GCWGC 4 cut(s) 293, 296, 578, 599
Tsp45I GTSAC 3 cut(s) 172, 237, 660
TspDTI ATGAA 3 cut(s) 216, 300, 1058
TspRI CASTG 4 cut(s) 669, 816, 822, 909
Tth111I GACNNNGTC 1 cut(s) 925
XceI RCATGY 1 cut(s) 946
XhoI CTCGAG 1 cut(s) 890
XmiI GTMKAC 1 cut(s) 920
XspI CTAG 5 cut(s) 48, 72, 84, 792, 851
ZraI GACGTC 2 cut(s) 900, 927
ZrmI AGTACT 2 cut(s) 76, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.