Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002197

Physical Location & Seq

Genomic Coordinates Forward (+)

21391373 .. 21394589

Gene Structure 3217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g23010.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGCATTTTTTTTATCACATCCATCATCTCCCTCCTTCTCTTCTCTCGCTCTTTGTCTATTTTTCTCTCTTACTTAATTTCCTCAATTGCTTTCTTTGGGTAAGAGAGAGAGAGAGAGAGAGAGCCAGTTTAATGGCGAAAACCTCACAGCAAAACCAGAAGAATACTGCTGGAAGCACTAACAGGAGCAGCAGCACCACTAGCACTGTTACAACAACAAAAGTCAAGCGGACGCGGAAAAGCGTCCGCCGTGACTCTCCGCCCCAGCGGAGCTCCATATACCGTGGCGTCACGAGGCATCGATGGACGGGTCGATACGAAGCTCATCTGTGGGATAAGAATTGCTGGAATGAGTCGCAGAACAAGAAAGGAAGACAAGTTTATCTAGGGGCATATGATGATGAAGAAGCTGCTGCACGTGCTTATGACTTGGCAGCATTAAAGTACTGGGGACGAGATACAATCCTCAATTTCCCAGTATCCACATATGAAGAAGAGCTCAAAGAAATGGAGAGCCAGTCGAAAGAAGAATACATTGGATCATTGAGAAGGAAAAGTAGTGGATTTTCTCGCGGGGTTTCGAAGTATAGAGGCGTCGCAAGACACCATCATAATGGAAGATGGGAAGCTCGAATAGGCAGAGTATTTGGAAACAAATACCTTTACCTTGGAACCTTCGCTACACAAGAAGAAGCAGCCACAGCATATGACATGGCAGCAATAGAGTACCGTGGACTTAATGCCGTTACAAACTTTGATCTTAGCCGTTACATCAAGTCTCTGTGCCCAAATACTACAAACGAGCCTAACGACGATCAACAAAACCCTAACGGTGACCTCTATGAAATGCAAAACCCTGATGGCGTCCTCAACCAAATGCACAACCCTAATGGTAAACCAGAACTGGGGATCATGCCTGACCACACTAGTTCGAGTAGCACTAGCGATTCTTCGGTTGTCTTGCCACGGACAGGAAATGGTTCTTCAGCGTCATCTGCACTAGGGCTCTTGCTACAATCTCCCAAGTTTAAAGAAATGCTTGAGAGATCCTCTGTTAAGGAATGCTCACCAACACTTTCGGAGCCAGAGATACGTCGACGCATTTTTCCTGATGACATTCAAACGTATTTTGATTGCCAAGACTTGAACAGCATTGCGGAAGGAGATGACATTATTTTTGGTGAGTTACAGCCGTTTGCTTCGCCTGTTTTTCACTGTGAACTTGATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010033 GO:0010035 GO:0010187 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0040008 GO:0042221 GO:0042304 GO:0045723 GO:0045834 GO:0045923 GO:0046889 GO:0046890 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1900140 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

411

Amino Acids

46.76

Weight (kDa)

7.67

Isoelectric Point (pI)

56.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G79700 AT1G79700 AT1G79700 AT1G79700
fragaria_vesca	FvH4_4g08800 FvH4_6g28200 FvH4_6g28200 FvH4_6g28200
malus_domestica	MD09G1228500.v1.1 MD16G1258700.v1.1 MD17G1226700.v1.1
prunus_persica	Prupe.1G101600_v2.0.a1 Prupe.3G104100_v2.0.a1
pyrus_communis	pycom09g14740 pycom17g23010
rosa_chinensis	RchiOBHm_Chr2g0132251 RchiOBHm_Chr4g0405371
rosa_laevigata	RLG00000008847 RLG00000019240
rosa_multiflora	Rmu_sc0006313.1_g000002 Rmu_sc0011487.1_g000002
rosa_roxburghii	Rroxscaffold_2G00112250 Rroxscaffold_5G00349830
rosa_rugosa	Rorug02G0303000 Rorug02G0303000 Rorug04G0057800
rosa_samantha	Rh2AG356200 Rh2BG362600 Rh2CG339700 Rh2DG379500 Rh4AG131300 Rh4BG125900 Rh4CG138400 Rh4DG125400
rosa_wichuraiana	Rw2G028940 Rw4G010640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1096
AccII	CGCG	2 cut(s)	235, 573
AciI	CCGC	7 cut(s)	229, 235, 247, 260, 268, 573, 1157
AclWI	GGATC	3 cut(s)	547, 917, 1041
AcuI	CTGAAG	1 cut(s)	969
AcvI	CACGTG	1 cut(s)	419
AcyI	GRCGYC	3 cut(s)	288, 594, 864
AfaI	GTAC	2 cut(s)	446, 728
AfiI	CCNNNNNNNGG	2 cut(s)	905, 971
AgsI	TTSAA	2 cut(s)	1121, 1147
AhlI	ACTAGT	1 cut(s)	926
AjuI	GAANNNNNNNTTGG	2 cut(s)	519, 551
AluBI	AGCT	5 cut(s)	273, 323, 410, 499, 629
AluI	AGCT	5 cut(s)	273, 323, 410, 499, 629
Alw21I	GWGCWC	2 cut(s)	275, 501
Alw26I	GTCTC	1 cut(s)	783
AlwI	GGATC	3 cut(s)	547, 917, 1041
ApeKI	GCWGC	7 cut(s)	189, 192, 410, 413, 434, 695, 716
ArsI	GACNNNNNNTTYG	2 cut(s)	1160, 1192
Asp700I	GAANNNNTTC	1 cut(s)	979
AsuHPI	GGTGA	3 cut(s)	845, 1059, 1193
AsuII	TTCGAA	1 cut(s)	581
BaeGI	GKGCMC	1 cut(s)	788
BanII	GRGCYC	3 cut(s)	275, 501, 1008
BauI	CACGAG	1 cut(s)	292
BbrPI	CACGTG	1 cut(s)	419
BbsI	GAAGAC	1 cut(s)	379
Bbv12I	GWGCWC	2 cut(s)	275, 501
BbvI	GCAGC	7 cut(s)	201, 204, 397, 400, 446, 707, 728
BccI	CCATC	5 cut(s)	30, 297, 615, 615, 854
BceAI	ACGGC	4 cut(s)	234, 728, 750, 1177
BciVI	GTATCC	1 cut(s)	490
BcoDI	GTCTC	1 cut(s)	783
BcuI	ACTAGT	1 cut(s)	926
BfaI	CTAG	5 cut(s)	201, 386, 927, 942, 1001
BfuI	GTATCC	1 cut(s)	490
BisI	GCNGC	7 cut(s)	190, 193, 411, 414, 435, 696, 717
BlsI	GCNGC	7 cut(s)	191, 194, 412, 415, 436, 697, 718
BmcAI	AGTACT	1 cut(s)	446
BmiI	GGNNCC	2 cut(s)	673, 1083
BmrI	ACTGGG	3 cut(s)	457, 470, 914
BmsI	GCATC	2 cut(s)	307, 1216
BmuI	ACTGGG	3 cut(s)	457, 470, 914
BpiI	GAAGAC	1 cut(s)	379
BplI	GAGNNNNNCTC	2 cut(s)	1034, 1066
Bpu14I	TTCGAA	1 cut(s)	581
BpuEI	CTTGAG	1 cut(s)	1061
Bsa29I	ATCGAT	1 cut(s)	301
BsaAI	YACGTR	1 cut(s)	419
BsaHI	GRCGYC	3 cut(s)	288, 594, 864
BsaJI	CCNNGG	4 cut(s)	283, 667, 730, 965
BsaXI	ACNNNNNCTCC	2 cut(s)	503, 533
Bsc4I	CCNNNNNNNGG	2 cut(s)	905, 971
Bse1I	ACTGG	5 cut(s)	126, 452, 476, 517, 909
Bse3DI	GCAATG	1 cut(s)	1152
BseCI	ATCGAT	1 cut(s)	301
BseDI	CCNNGG	4 cut(s)	283, 667, 730, 965
BseGI	GGATG	1 cut(s)	18
BseLI	CCNNNNNNNGG	2 cut(s)	905, 971
BseMI	GCAATG	1 cut(s)	1152
BseNI	ACTGG	5 cut(s)	126, 452, 476, 517, 909
BseSI	GKGCMC	1 cut(s)	788
BseXI	GCAGC	7 cut(s)	201, 204, 397, 400, 446, 707, 728
BseYI	CCCAGC	1 cut(s)	264
BsgI	GTGCAG	2 cut(s)	399, 981
Bsh1236I	CGCG	2 cut(s)	235, 573
BshVI	ATCGAT	1 cut(s)	301
BsiHKAI	GWGCWC	2 cut(s)	275, 501
BslFI	GGGAC	1 cut(s)	465
BslI	CCNNNNNNNGG	2 cut(s)	905, 971
BsmAI	GTCTC	1 cut(s)	783
BsmFI	GGGAC	1 cut(s)	465
BsmI	GAATGC	1 cut(s)	1067
Bsp119I	TTCGAA	1 cut(s)	581
Bsp1286I	GDGCHC	4 cut(s)	275, 501, 788, 1008
Bsp143I	GATC	5 cut(s)	539, 757, 814, 909, 1046
BspACI	CCGC	7 cut(s)	229, 235, 247, 260, 268, 573, 1157
BspDI	ATCGAT	1 cut(s)	301
BspFNI	CGCG	2 cut(s)	235, 573
BspLI	GGNNCC	2 cut(s)	673, 1083
BspPI	GGATC	3 cut(s)	547, 917, 1041
BspQI	GCTCTTC	1 cut(s)	489
BspT104I	TTCGAA	1 cut(s)	581
BsrDI	GCAATG	1 cut(s)	1152
BsrI	ACTGG	5 cut(s)	126, 452, 476, 517, 909
BssECI	CCNNGG	4 cut(s)	283, 667, 730, 965
BssMI	GATC	5 cut(s)	539, 757, 814, 909, 1046
BssNI	GRCGYC	3 cut(s)	288, 594, 864
BssSI	CACGAG	1 cut(s)	292
BssT1I	CCWWGG	1 cut(s)	667
Bst2BI	CACGAG	1 cut(s)	292
Bst4CI	ACNGT	5 cut(s)	208, 284, 731, 833, 1217
Bst6I	CTCTTC	2 cut(s)	45, 489
BstACI	GRCGYC	3 cut(s)	288, 594, 864
BstBAI	YACGTR	1 cut(s)	419
BstBI	TTCGAA	1 cut(s)	581
BstDEI	CTNAG	1 cut(s)	761
BstDSI	CCRYGG	3 cut(s)	283, 730, 965
BstEII	GGTNACC	1 cut(s)	833
BstF5I	GGATG	1 cut(s)	18
BstFNI	CGCG	2 cut(s)	235, 573
BstKTI	GATC	5 cut(s)	542, 760, 817, 912, 1049
BstMAI	GTCTC	1 cut(s)	783
BstMBI	GATC	5 cut(s)	539, 757, 814, 909, 1046
BstMWI	GCNNNNNNNGC	4 cut(s)	201, 419, 701, 995
BstPI	GGTNACC	1 cut(s)	833
BstSLI	GKGCMC	1 cut(s)	788
BstUI	CGCG	2 cut(s)	235, 573
BstV1I	GCAGC	7 cut(s)	201, 204, 397, 400, 446, 707, 728
BstV2I	GAAGAC	1 cut(s)	379
BstX2I	RGATCY	1 cut(s)	1046
BstXI	CCANNNNNNTGG	2 cut(s)	133, 614
BstYI	RGATCY	1 cut(s)	1046
Bsu15I	ATCGAT	1 cut(s)	301
BsuI	GTATCC	1 cut(s)	490
BsuTUI	ATCGAT	1 cut(s)	301
BtgI	CCRYGG	3 cut(s)	283, 730, 965
BtsCI	GGATG	1 cut(s)	18
BtsIMutI	CAGTG	2 cut(s)	204, 1213
ClaI	ATCGAT	1 cut(s)	301
CseI	GACGC	7 cut(s)	232, 241, 277, 583, 853, 978, 1107
Csp6I	GTAC	2 cut(s)	445, 727
CviAII	CATG	3 cut(s)	712, 913, 1230
CviQI	GTAC	2 cut(s)	445, 727
DdeI	CTNAG	1 cut(s)	761
DpnI	GATC	5 cut(s)	541, 759, 816, 911, 1048
DpnII	GATC	5 cut(s)	539, 757, 814, 909, 1046
DraI	TTTAAA	1 cut(s)	1030
Eam1104I	CTCTTC	2 cut(s)	45, 489
EarI	CTCTTC	2 cut(s)	45, 489
EciI	GGCGGA	2 cut(s)	236, 249
Ecl136II	GAGCTC	2 cut(s)	273, 499
Eco130I	CCWWGG	1 cut(s)	667
Eco24I	GRGCYC	3 cut(s)	275, 501, 1008
Eco53kI	GAGCTC	2 cut(s)	273, 499
Eco57I	CTGAAG	1 cut(s)	969
Eco72I	CACGTG	1 cut(s)	419
Eco91I	GGTNACC	1 cut(s)	833
EcoICRI	GAGCTC	2 cut(s)	273, 499
EcoO65I	GGTNACC	1 cut(s)	833
EcoT14I	CCWWGG	1 cut(s)	667
EcoT22I	ATGCAT	2 cut(s)	6, 1231
EcoT38I	GRGCYC	3 cut(s)	275, 501, 1008
ErhI	CCWWGG	1 cut(s)	667
FaeI	CATG	3 cut(s)	715, 916, 1233
FalI	AAGNNNNNCTT	2 cut(s)	1023, 1055
FaqI	GGGAC	1 cut(s)	465
FatI	CATG	3 cut(s)	711, 912, 1229
FauI	CCCGC	1 cut(s)	566
FauNDI	CATATG	3 cut(s)	394, 487, 706
FblI	GTMKAC	1 cut(s)	1096
Fnu4HI	GCNGC	7 cut(s)	190, 193, 411, 414, 435, 696, 717
FokI	GGATG	1 cut(s)	5
FriOI	GRGCYC	3 cut(s)	275, 501, 1008
Fsp4HI	GCNGC	7 cut(s)	190, 193, 411, 414, 435, 696, 717
FspBI	CTAG	5 cut(s)	201, 386, 927, 942, 1001
GluI	GCNGC	7 cut(s)	190, 193, 411, 414, 435, 696, 717
GsaI	CCCAGC	1 cut(s)	268
HgaI	GACGC	7 cut(s)	232, 241, 277, 583, 853, 978, 1107
Hin1I	GRCGYC	3 cut(s)	288, 594, 864
Hin1II	CATG	3 cut(s)	715, 916, 1233
HincII	GTYRAC	1 cut(s)	1097
HindII	GTYRAC	1 cut(s)	1097
HinfI	GANTC	3 cut(s)	254, 353, 947
HphI	GGTGA	3 cut(s)	845, 1059, 1193
Hpy166II	GTNNAC	4 cut(s)	734, 896, 1097, 1220
Hpy188I	TCNGA	1 cut(s)	1081
Hpy188III	TCNNGA	2 cut(s)	292, 1109
Hpy8I	GTNNAC	4 cut(s)	734, 896, 1097, 1220
Hpy99I	CGWCG	4 cut(s)	599, 815, 1098, 1101
HpyAV	CCTTC	4 cut(s)	45, 543, 685, 1154
HpyCH4III	ACNGT	5 cut(s)	208, 284, 731, 833, 1217
HpyCH4IV	ACGT	3 cut(s)	418, 1093, 1124
HpyCH4V	TGCA	6 cut(s)	4, 416, 850, 880, 998, 1229
HpyF10VI	GCNNNNNNNGC	4 cut(s)	201, 419, 701, 995
HpyF3I	CTNAG	1 cut(s)	761
HpySE526I	ACGT	3 cut(s)	418, 1093, 1124
Hsp92I	GRCGYC	3 cut(s)	288, 594, 864
Hsp92II	CATG	3 cut(s)	715, 916, 1233
Kzo9I	GATC	5 cut(s)	539, 757, 814, 909, 1046
LguI	GCTCTTC	1 cut(s)	489
LmnI	GCTCC	4 cut(s)	186, 270, 278, 1081
Lsp1109I	GCAGC	7 cut(s)	201, 204, 397, 400, 446, 707, 728
LweI	GCATC	2 cut(s)	307, 1216
MaeI	CTAG	5 cut(s)	201, 386, 927, 942, 1001
MaeII	ACGT	3 cut(s)	418, 1093, 1124
MaeIII	GTNAC	7 cut(s)	208, 251, 289, 745, 767, 833, 1185
MalI	GATC	5 cut(s)	541, 759, 816, 911, 1048
MboI	GATC	5 cut(s)	539, 757, 814, 909, 1046
MfeI	CAATTG	1 cut(s)	85
MflI	RGATCY	1 cut(s)	1046
MhlI	GDGCHC	4 cut(s)	275, 501, 788, 1008
MluCI	AATT	4 cut(s)	76, 85, 340, 469
MlyI	GAGTC	2 cut(s)	248, 362
MnlI	CCTC	9 cut(s)	42, 92, 154, 288, 476, 584, 848, 878, 1060
Mph1103I	ATGCAT	2 cut(s)	6, 1231
MroXI	GAANNNNTTC	1 cut(s)	979
MseI	TTAA	6 cut(s)	75, 131, 440, 738, 1029, 1056
MslI	CAYNNNNRTG	1 cut(s)	612
MspA1I	CMGCKG	1 cut(s)	268
MunI	CAATTG	1 cut(s)	85
Mva1269I	GAATGC	1 cut(s)	1067
MvnI	CGCG	2 cut(s)	235, 573
MwoI	GCNNNNNNNGC	4 cut(s)	201, 419, 701, 995
NdeI	CATATG	3 cut(s)	394, 487, 706
NdeII	GATC	5 cut(s)	539, 757, 814, 909, 1046
NlaIII	CATG	3 cut(s)	715, 916, 1233
NlaIV	GGNNCC	2 cut(s)	673, 1083
NmuCI	GTSAC	3 cut(s)	251, 289, 833
NsiI	ATGCAT	2 cut(s)	6, 1231
NspV	TTCGAA	1 cut(s)	581
PciSI	GCTCTTC	1 cut(s)	489
PcsI	WCGNNNNNNNCGW	1 cut(s)	807
PctI	GAATGC	1 cut(s)	1067
PdmI	GAANNNNTTC	1 cut(s)	979
PfeI	GAWTC	1 cut(s)	947
PkrI	GCNGC	7 cut(s)	191, 194, 412, 415, 436, 697, 718
PleI	GAGTC	2 cut(s)	248, 361
PmaCI	CACGTG	1 cut(s)	419
PmlI	CACGTG	1 cut(s)	419
PpsI	GAGTC	2 cut(s)	248, 361
Ppu21I	YACGTR	1 cut(s)	419
Psp124BI	GAGCTC	2 cut(s)	275, 501
PspCI	CACGTG	1 cut(s)	419
PspEI	GGTNACC	1 cut(s)	833
PspFI	CCCAGC	1 cut(s)	264
PspN4I	GGNNCC	2 cut(s)	673, 1083
PsrI	GAACNNNNNNTAC	2 cut(s)	664, 696
PsuI	RGATCY	1 cut(s)	1046
RsaI	GTAC	2 cut(s)	446, 728
RsaNI	GTAC	2 cut(s)	445, 727
RseI	CAYNNNNRTG	1 cut(s)	612
SacI	GAGCTC	2 cut(s)	275, 501
SalI	GTCGAC	1 cut(s)	1095
SapI	GCTCTTC	1 cut(s)	489
SaqAI	TTAA	6 cut(s)	75, 131, 440, 738, 1029, 1056
SatI	GCNGC	7 cut(s)	190, 193, 411, 414, 435, 696, 717
Sau3AI	GATC	5 cut(s)	539, 757, 814, 909, 1046
ScaI	AGTACT	1 cut(s)	446
SchI	GAGTC	2 cut(s)	248, 362
SduI	GDGCHC	4 cut(s)	275, 501, 788, 1008
SfaNI	GCATC	2 cut(s)	307, 1216
SfuI	TTCGAA	1 cut(s)	581
SgrDI	CGTCGACG	1 cut(s)	1095
SmiMI	CAYNNNNRTG	1 cut(s)	612
SmlI	CTYRAG	1 cut(s)	1040
SmoI	CTYRAG	1 cut(s)	1040
SpeI	ACTAGT	1 cut(s)	926
Sse9I	AATT	4 cut(s)	76, 85, 340, 469
SsiI	CCGC	7 cut(s)	229, 235, 247, 260, 268, 573, 1157
SspMI	CTAG	5 cut(s)	201, 386, 927, 942, 1001
SstI	GAGCTC	2 cut(s)	275, 501
StyI	CCWWGG	1 cut(s)	667
TaaI	ACNGT	5 cut(s)	208, 284, 731, 833, 1217
TaiI	ACGT	3 cut(s)	421, 1096, 1127
TaqI	TCGA	7 cut(s)	301, 313, 521, 581, 631, 932, 1096
TasI	AATT	4 cut(s)	76, 85, 340, 469
TatI	WGTACW	1 cut(s)	444
TfiI	GAWTC	1 cut(s)	947
Tru1I	TTAA	6 cut(s)	75, 131, 440, 738, 1029, 1056
Tru9I	TTAA	6 cut(s)	75, 131, 440, 738, 1029, 1056
TscAI	CASTG	2 cut(s)	211, 1220
TseFI	GTSAC	3 cut(s)	251, 289, 833
TseI	GCWGC	7 cut(s)	189, 192, 410, 413, 434, 695, 716
Tsp45I	GTSAC	3 cut(s)	251, 289, 833
TspDTI	ATGAA	3 cut(s)	417, 504, 858
TspGWI	ACGGA	1 cut(s)	982
TspRI	CASTG	2 cut(s)	211, 1220
XmiI	GTMKAC	1 cut(s)	1096
XmnI	GAANNNNTTC	1 cut(s)	979
XspI	CTAG	5 cut(s)	201, 386, 927, 942, 1001
ZrmI	AGTACT	1 cut(s)	446
Zsp2I	ATGCAT	2 cut(s)	6, 1231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.