RchiOBHm_Chr2g0132251

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
48702519 .. 48705344
2826 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50352

Sequence Viewer

Length: 1077 bp
ATGGCGAAAACCTCACAGAAGATCCAAAAGAATACAACTCCAAGCTCTAGCAATAATAGCAACACCACCACTAGTACTACTACTAGTAGTCCTCCGGCCACCAAGGTCAAGCGGACGCGTAAAAGTGTACGCCGCGACTCTCCGCCTCAGCGGAGCTCCATCTACAGAGGAGTCACAAGGCATCGATGGACGGGTCGGTATGAAGCTCATTTGTGGGATAAGAACTGTTGGAATGAGTCACAGAACAAGAAAGGCAGACAAGGGGCATATGATGATGAAGAAGCTGCTGCACGTGCCTATGACTTGGCAGCATTAAAGTACTGGGGACAAGATACAATCCTCAATTTGCCAGTTTCCACCTATGAGGAAGAGCTCAAAGAAATGGACGGTCAGTCTAAAGAAGAATACATTGGATCATTGAGGAGGAAGAGTAGTGGATTTTCTCGTGGTGTTTCAAAATATAGAGGTGTAGCAAGACACCACCATAATGGAAGATGGGAGGCTCGAATCGGAAGAGTATTTGGAAACAAATATCTCTACCTTGGAACCTATGCGACGCAAGAAGAAGCAGCTACAGCTTACGACATGGCAGCAATAGAGTATCGTGGACTTAATGCCGTAACGAACTTCGATCTTAGCCGTTACATCAAGTCACTGTGCCCCAATAATGAGAACATTCCCAACAACACGCAACCAAACCCTAATGCTGACCTCAGTTCGATTCAAAACCCTGATTCTAAGGTAGAGTTAGGGTTTATGCCCCACAACCCGAGTCCGAGCACTAGCGAGTCAATGGTAGCAGTGCCACGGCCGGGGAATGGTTCGTCGGCATCATCTGCACTAGGGCTTTTATTGCAGTCCCCTAAGTTCAAGGAAATGCTCGAGAGGACGTCAGTGGTAGACTGCTCGTCAACGACGACTTTGGAGCCAAACATGCCGCGCCGGAGTTTCCCCGATGACATTCAAACGTACTTTGATTGTCAAGATTTGAATAGCTATGCAGAAGGAGACGACATTATTTTCGGGGAGTTAAACTCATTTGCTTCACCTGTTTTTCATTGTGAACTTGACGCCTGA

Protein Analysis

358

Amino Acids

40.07

Weight (kDa)

8.15

Isoelectric Point (pI)

57.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 55 - 109 2.7e-07 AP2 domain
AP2 PF00847 152 - 203 2e-11 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 893
AccI GTMKAC 1 cut(s) 900
AccII CGCG 3 cut(s) 118, 135, 940
AciI CCGC 5 cut(s) 112, 133, 143, 151, 938
AclWI GGATC 2 cut(s) 16, 421
AcoI YGGCCR 2 cut(s) 96, 809
AcvI CACGTG 1 cut(s) 293
AcyI GRCGYC 2 cut(s) 890, 1071
AfaI GTAC 4 cut(s) 76, 129, 320, 971
AfiI CCNNNNNNNGG 2 cut(s) 812, 818
AflIII ACRYGT 1 cut(s) 116
AgsI TTSAA 5 cut(s) 456, 725, 871, 965, 991
AhdI GACNNNNNGTC 2 cut(s) 391, 907
AhlI ACTAGT 2 cut(s) 71, 83
AjuI GAANNNNNNNTTGG 2 cut(s) 393, 425
AluBI AGCT 8 cut(s) 45, 156, 206, 284, 373, 572, 578, 996
AluI AGCT 8 cut(s) 45, 156, 206, 284, 373, 572, 578, 996
Alw21I GWGCWC 3 cut(s) 158, 375, 782
Alw26I GTCTC 1 cut(s) 1002
AlwI GGATC 2 cut(s) 16, 421
Ama87I CYCGRG 2 cut(s) 769, 881
AoxI GGCC 2 cut(s) 96, 809
ApeKI GCWGC 5 cut(s) 284, 287, 308, 569, 590
ArsI GACNNNNNNTTYG 2 cut(s) 1004, 1036
AspLEI GCGC 1 cut(s) 942
AsuC2I CCSGG 1 cut(s) 813
AsuHPI GGTGA 1 cut(s) 1038
AvaI CYCGRG 2 cut(s) 769, 881
BaeGI GKGCMC 1 cut(s) 662
BanII GRGCYC 2 cut(s) 158, 375
BauI CACGAG 1 cut(s) 444
BbrPI CACGTG 1 cut(s) 293
Bbv12I GWGCWC 3 cut(s) 158, 375, 782
BbvCI CCTCAGC 1 cut(s) 147
BbvI GCAGC 5 cut(s) 271, 274, 320, 581, 602
BccI CCATC 3 cut(s) 167, 180, 489
BceAI ACGGC 3 cut(s) 602, 624, 824
BcnI CCSGG 1 cut(s) 813
BcoDI GTCTC 1 cut(s) 1002
BcuI ACTAGT 2 cut(s) 71, 83
BfaI CTAG 5 cut(s) 48, 72, 84, 783, 842
BfmI CTRYAG 2 cut(s) 163, 573
BisI GCNGC 7 cut(s) 133, 285, 288, 309, 570, 591, 938
BlsI GCNGC 7 cut(s) 134, 286, 289, 310, 571, 592, 939
BmcAI AGTACT 2 cut(s) 76, 320
Bme1390I CCNGG 1 cut(s) 813
BmeRI GACNNNNNGTC 2 cut(s) 391, 907
BmeT110I CYCGRG 2 cut(s) 769, 881
BmiI GGNNCC 2 cut(s) 547, 927
BmrFI CCNGG 1 cut(s) 813
BmrI ACTGGG 1 cut(s) 331
BmsI GCATC 2 cut(s) 190, 839
BmuI ACTGGG 1 cut(s) 331
BplI GAGNNNNNCTC 2 cut(s) 1019, 1051
Bpu10I CCTNAGC 1 cut(s) 147
BpuMI CCSGG 1 cut(s) 813
Bsa29I ATCGAT 1 cut(s) 184
BsaAI YACGTR 1 cut(s) 293
BsaHI GRCGYC 2 cut(s) 890, 1071
BsaJI CCNNGG 4 cut(s) 102, 541, 806, 812
BsaXI ACNNNNNCTCC 2 cut(s) 415, 445
Bsc4I CCNNNNNNNGG 2 cut(s) 812, 818
Bse1I ACTGG 2 cut(s) 326, 350
BseCI ATCGAT 1 cut(s) 184
BseDI CCNNGG 4 cut(s) 102, 541, 806, 812
BseLI CCNNNNNNNGG 2 cut(s) 812, 818
BseMII CTCAG 2 cut(s) 161, 727
BseNI ACTGG 2 cut(s) 326, 350
BseRI GAGGAG 2 cut(s) 183, 436
BseSI GKGCMC 1 cut(s) 662
BseX3I CGGCCG 1 cut(s) 809
BseXI GCAGC 5 cut(s) 271, 274, 320, 581, 602
BsgI GTGCAG 2 cut(s) 273, 822
Bsh1236I CGCG 3 cut(s) 118, 135, 940
Bsh1285I CGRYCG 1 cut(s) 812
BshFI GGCC 2 cut(s) 98, 811
BshVI ATCGAT 1 cut(s) 184
BsiEI CGRYCG 1 cut(s) 812
BsiHKAI GWGCWC 3 cut(s) 158, 375, 782
BsiHKCI CYCGRG 2 cut(s) 769, 881
BsiSI CCGG 3 cut(s) 95, 812, 943
BslFI GGGAC 2 cut(s) 339, 844
BslI CCNNNNNNNGG 2 cut(s) 812, 818
BsmAI GTCTC 1 cut(s) 1002
BsmBI CGTCTC 1 cut(s) 1002
BsmFI GGGAC 2 cut(s) 339, 844
BsnI GGCC 2 cut(s) 98, 811
BsoBI CYCGRG 2 cut(s) 769, 881
Bsp1286I GDGCHC 4 cut(s) 158, 375, 662, 782
Bsp143I GATC 3 cut(s) 21, 413, 631
BspACI CCGC 5 cut(s) 112, 133, 143, 151, 938
BspANI GGCC 2 cut(s) 98, 811
BspCNI CTCAG 2 cut(s) 160, 726
BspDI ATCGAT 1 cut(s) 184
BspFNI CGCG 3 cut(s) 118, 135, 940
BspLI GGNNCC 2 cut(s) 547, 927
BspPI GGATC 2 cut(s) 16, 421
BspQI GCTCTTC 1 cut(s) 363
BsrI ACTGG 2 cut(s) 326, 350
BssECI CCNNGG 4 cut(s) 102, 541, 806, 812
BssMI GATC 3 cut(s) 21, 413, 631
BssNI GRCGYC 2 cut(s) 890, 1071
BssSI CACGAG 1 cut(s) 444
BssT1I CCWWGG 2 cut(s) 102, 541
Bst2BI CACGAG 1 cut(s) 444
Bst4CI ACNGT 3 cut(s) 227, 389, 657
Bst6I CTCTTC 3 cut(s) 363, 422, 508
BstACI GRCGYC 2 cut(s) 890, 1071
BstAPI GCANNNNNTGC 1 cut(s) 836
BstBAI YACGTR 1 cut(s) 293
BstDEI CTNAG 5 cut(s) 147, 635, 713, 738, 864
BstDSI CCRYGG 1 cut(s) 806
BstFNI CGCG 3 cut(s) 118, 135, 940
BstHHI GCGC 1 cut(s) 942
BstKTI GATC 3 cut(s) 24, 416, 634
BstMAI GTCTC 1 cut(s) 1002
BstMBI GATC 3 cut(s) 21, 413, 631
BstMCI CGRYCG 1 cut(s) 812
BstMWI GCNNNNNNNGC 6 cut(s) 57, 293, 575, 836, 853, 934
BstNSI RCATGY 1 cut(s) 937
BstSCI CCNGG 1 cut(s) 811
BstSFI CTRYAG 2 cut(s) 163, 573
BstSLI GKGCMC 1 cut(s) 662
BstUI CGCG 3 cut(s) 118, 135, 940
BstV1I GCAGC 5 cut(s) 271, 274, 320, 581, 602
BstX2I RGATCY 1 cut(s) 21
BstXI CCANNNNNNTGG 1 cut(s) 488
BstYI RGATCY 1 cut(s) 21
BstZI CGGCCG 1 cut(s) 809
Bsu15I ATCGAT 1 cut(s) 184
BsuRI GGCC 2 cut(s) 98, 811
BsuTUI ATCGAT 1 cut(s) 184
BtgI CCRYGG 1 cut(s) 806
BtsI GCAGTG 1 cut(s) 807
BtsIMutI CAGTG 3 cut(s) 653, 807, 900
CfoI GCGC 1 cut(s) 942
ClaI ATCGAT 1 cut(s) 184
CseI GACGC 2 cut(s) 124, 565
Csp6I GTAC 4 cut(s) 75, 128, 319, 970
CviAII CATG 2 cut(s) 586, 934
CviQI GTAC 4 cut(s) 75, 128, 319, 970
DdeI CTNAG 5 cut(s) 147, 635, 713, 738, 864
DpnI GATC 3 cut(s) 23, 415, 633
DpnII GATC 3 cut(s) 21, 413, 631
DriI GACNNNNNGTC 2 cut(s) 391, 907
EaeI YGGCCR 2 cut(s) 96, 809
EagI CGGCCG 1 cut(s) 809
Eam1104I CTCTTC 3 cut(s) 363, 422, 508
Eam1105I GACNNNNNGTC 2 cut(s) 391, 907
EarI CTCTTC 3 cut(s) 363, 422, 508
EciI GGCGGA 1 cut(s) 132
Ecl136II GAGCTC 2 cut(s) 156, 373
EclXI CGGCCG 1 cut(s) 809
Eco130I CCWWGG 2 cut(s) 102, 541
Eco24I GRGCYC 2 cut(s) 158, 375
Eco52I CGGCCG 1 cut(s) 809
Eco53kI GAGCTC 2 cut(s) 156, 373
Eco72I CACGTG 1 cut(s) 293
Eco88I CYCGRG 2 cut(s) 769, 881
EcoICRI GAGCTC 2 cut(s) 156, 373
EcoT14I CCWWGG 2 cut(s) 102, 541
EcoT38I GRGCYC 2 cut(s) 158, 375
ErhI CCWWGG 2 cut(s) 102, 541
Esp3I CGTCTC 1 cut(s) 1002
FaeI CATG 2 cut(s) 589, 937
FaqI GGGAC 2 cut(s) 339, 844
FatI CATG 2 cut(s) 585, 933
FauNDI CATATG 1 cut(s) 268
FblI GTMKAC 1 cut(s) 900
Fnu4HI GCNGC 7 cut(s) 133, 285, 288, 309, 570, 591, 938
FriOI GRGCYC 2 cut(s) 158, 375
Fsp4HI GCNGC 7 cut(s) 133, 285, 288, 309, 570, 591, 938
FspBI CTAG 5 cut(s) 48, 72, 84, 783, 842
GlaI GCGC 1 cut(s) 941
GluI GCNGC 7 cut(s) 133, 285, 288, 309, 570, 591, 938
HaeIII GGCC 2 cut(s) 98, 811
HapII CCGG 3 cut(s) 95, 812, 943
HgaI GACGC 2 cut(s) 124, 565
HhaI GCGC 1 cut(s) 942
Hin1I GRCGYC 2 cut(s) 890, 1071
Hin1II CATG 2 cut(s) 589, 937
Hin6I GCGC 1 cut(s) 940
HinP1I GCGC 1 cut(s) 940
HincII GTYRAC 1 cut(s) 912
HindII GTYRAC 1 cut(s) 912
HinfI GANTC 8 cut(s) 137, 171, 236, 507, 721, 734, 772, 788
HpaII CCGG 3 cut(s) 95, 812, 943
HphI GGTGA 1 cut(s) 1038
Hpy166II GTNNAC 5 cut(s) 128, 608, 901, 912, 1064
Hpy188I TCNGA 2 cut(s) 512, 777
Hpy188III TCNNGA 2 cut(s) 883, 983
Hpy8I GTNNAC 5 cut(s) 128, 608, 901, 912, 1064
Hpy99I CGWCG 3 cut(s) 559, 829, 919
HpyAV CCTTC 1 cut(s) 998
HpyCH4III ACNGT 3 cut(s) 227, 389, 657
HpyCH4IV ACGT 3 cut(s) 292, 890, 968
HpyCH4V TGCA 4 cut(s) 290, 839, 856, 1001
HpyF10VI GCNNNNNNNGC 6 cut(s) 57, 293, 575, 836, 853, 934
HpyF3I CTNAG 5 cut(s) 147, 635, 713, 738, 864
HpySE526I ACGT 3 cut(s) 292, 890, 968
Hsp92I GRCGYC 2 cut(s) 890, 1071
Hsp92II CATG 2 cut(s) 589, 937
HspAI GCGC 1 cut(s) 940
Kzo9I GATC 3 cut(s) 21, 413, 631
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 3 cut(s) 153, 161, 925
LpnPI CCDG 7 cut(s) 108, 307, 363, 744, 825, 956, 1062
Lsp1109I GCAGC 5 cut(s) 271, 274, 320, 581, 602
LweI GCATC 2 cut(s) 190, 839
MaeI CTAG 5 cut(s) 48, 72, 84, 783, 842
MaeII ACGT 3 cut(s) 292, 890, 968
MaeIII GTNAC 5 cut(s) 172, 237, 619, 641, 651
MalI GATC 3 cut(s) 23, 415, 633
MboI GATC 3 cut(s) 21, 413, 631
MboII GAAGA 8 cut(s) 31, 290, 380, 413, 439, 504, 525, 575
MflI RGATCY 1 cut(s) 21
MhlI GDGCHC 4 cut(s) 158, 375, 662, 782
MluCI AATT 1 cut(s) 343
MluI ACGCGT 1 cut(s) 116
MlyI GAGTC 5 cut(s) 131, 180, 245, 781, 797
MmeI TCCRAC 1 cut(s) 209
MseI TTAA 3 cut(s) 314, 612, 1031
MslI CAYNNNNRTG 1 cut(s) 486
MspA1I CMGCKG 1 cut(s) 151
MspI CCGG 3 cut(s) 95, 812, 943
MspR9I CCNGG 1 cut(s) 813
MvnI CGCG 3 cut(s) 118, 135, 940
MwoI GCNNNNNNNGC 6 cut(s) 57, 293, 575, 836, 853, 934
NciI CCSGG 1 cut(s) 813
NdeI CATATG 1 cut(s) 268
NdeII GATC 3 cut(s) 21, 413, 631
NlaIII CATG 2 cut(s) 589, 937
NlaIV GGNNCC 2 cut(s) 547, 927
NmuCI GTSAC 3 cut(s) 172, 237, 651
NspI RCATGY 1 cut(s) 937
PaeR7I CTCGAG 1 cut(s) 881
PciSI GCTCTTC 1 cut(s) 363
PcsI WCGNNNNNNNCGW 1 cut(s) 914
PfeI GAWTC 3 cut(s) 507, 721, 734
PkrI GCNGC 7 cut(s) 134, 286, 289, 310, 571, 592, 939
PleI GAGTC 5 cut(s) 131, 179, 244, 780, 796
PmaCI CACGTG 1 cut(s) 293
PmlI CACGTG 1 cut(s) 293
PpsI GAGTC 5 cut(s) 131, 179, 244, 780, 796
Ppu21I YACGTR 1 cut(s) 293
Psp124BI GAGCTC 2 cut(s) 158, 375
PspCI CACGTG 1 cut(s) 293
PspN4I GGNNCC 2 cut(s) 547, 927
PsuI RGATCY 1 cut(s) 21
RsaI GTAC 4 cut(s) 76, 129, 320, 971
RsaNI GTAC 4 cut(s) 75, 128, 319, 970
RseI CAYNNNNRTG 1 cut(s) 486
SacI GAGCTC 2 cut(s) 158, 375
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 3 cut(s) 314, 612, 1031
SatI GCNGC 7 cut(s) 133, 285, 288, 309, 570, 591, 938
Sau3AI GATC 3 cut(s) 21, 413, 631
ScaI AGTACT 2 cut(s) 76, 320
SchI GAGTC 5 cut(s) 131, 180, 245, 781, 797
ScrFI CCNGG 1 cut(s) 813
SduI GDGCHC 4 cut(s) 158, 375, 662, 782
SfaNI GCATC 2 cut(s) 190, 839
SfcI CTRYAG 2 cut(s) 163, 573
Sfr274I CTCGAG 1 cut(s) 881
SlaI CTCGAG 1 cut(s) 881
SmiMI CAYNNNNRTG 1 cut(s) 486
SmlI CTYRAG 1 cut(s) 881
SmoI CTYRAG 1 cut(s) 881
SpeI ACTAGT 2 cut(s) 71, 83
Sse9I AATT 1 cut(s) 343
SsiI CCGC 5 cut(s) 112, 133, 143, 151, 938
SspMI CTAG 5 cut(s) 48, 72, 84, 783, 842
SstI GAGCTC 2 cut(s) 158, 375
StyD4I CCNGG 1 cut(s) 811
StyI CCWWGG 2 cut(s) 102, 541
TaaI ACNGT 3 cut(s) 227, 389, 657
TaiI ACGT 3 cut(s) 295, 893, 971
TaqI TCGA 5 cut(s) 184, 505, 630, 719, 882
TasI AATT 1 cut(s) 343
TatI WGTACW 2 cut(s) 74, 318
TauI GCSGC 2 cut(s) 135, 940
TfiI GAWTC 3 cut(s) 507, 721, 734
Tru1I TTAA 3 cut(s) 314, 612, 1031
Tru9I TTAA 3 cut(s) 314, 612, 1031
TscAI CASTG 3 cut(s) 660, 807, 900
TseFI GTSAC 3 cut(s) 172, 237, 651
TseI GCWGC 5 cut(s) 284, 287, 308, 569, 590
Tsp45I GTSAC 3 cut(s) 172, 237, 651
TspDTI ATGAA 3 cut(s) 216, 291, 1046
TspRI CASTG 3 cut(s) 660, 807, 900
XceI RCATGY 1 cut(s) 937
XhoI CTCGAG 1 cut(s) 881
XmiI GTMKAC 1 cut(s) 900
XspI CTAG 5 cut(s) 48, 72, 84, 783, 842
ZraI GACGTC 1 cut(s) 891
ZrmI AGTACT 2 cut(s) 76, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.