Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002197

Physical Location & Seq

Genomic Coordinates Reverse (-)

29990336 .. 29993766

Gene Structure 3431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G79700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCAAAAGTCTCTGGGAGGAGCAAGAAAACAATCGTTGACGATGAAATCAGCGATAAAACAGCGTCTGCGTCTGAGTCTGCGTCCATTGCCTTAACATCCAAACGCAAACGTAAGTCGCCGCCTCGAAACGCTCCTCTTCAACGCAGCTCCCCTTACAGAGGCGTCACAAGGCATAGATGGACTGGGAGATACGAAGCGCATTTGTGGGATAAGAACAGCTGGAACGATACACAGACCAAGAAAGGACGTCAAGTTTATCTAGGGGCTTACGACGAAGAAGAAGCAGCAGCACGTGCCTACGACTTAGCAGCATTGAAGTACTGGGGACGAGACACACTCTTGAACTTCCCTTTGCCGAGTTATGACGAAGACGTCAAAGAAATGGAAGGCCAATCCAAGGAAGAGTATATTGGATCATTGAGAAGAAAAAGTAGTGGATTTTCTCGCGGTGTATCAAAATACAGAGGCGTTGCAAGGCATCACCATAATGGGAGATGGGAAGCTAGAATTGGAAGGGTGTTTGCCACGCAAGAAGAAGCAGCAATCGCCTACGACATCGCGGCAATAGAGTACCGTGGACTTAACGCCGTTACCAATTTCGACGTCAGCCGTTATCTAAACCCTAACGCCGCCGCGGATAAAGCCGATTCCGATTCTAAGCCCATTCGAAGCCCTAGTCGCGAGCCCGAATCGTCGGATGATAACAAATCTCCGAAATCAGAGGAAGTAATCGAACCATCTACATCGCCGGAAGTGATTCCAACTCGCCGGAGCTTCCCCGACGATATCCAGACGTATTTTGGGTGTCAAGATTCCGGCAAGTTAGCGACTGAGGAAGACGTAATATTCGATTGTTTCAATTCTTATATAAATCCTGGCTTCTATAACGAGTTTGATTATGGACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010033 GO:0010035 GO:0010187 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0040008 GO:0042221 GO:0042304 GO:0045723 GO:0045834 GO:0045923 GO:0046889 GO:0046890 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1900140 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

303

Amino Acids

34.24

Weight (kDa)

6.56

Isoelectric Point (pI)

60.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	77 - 128	2.4e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G79700 AT1G79700 AT1G79700 AT1G79700
fragaria_vesca	FvH4_4g08800 FvH4_6g28200 FvH4_6g28200 FvH4_6g28200
malus_domestica	MD09G1228500.v1.1 MD16G1258700.v1.1 MD17G1226700.v1.1
prunus_persica	Prupe.1G101600_v2.0.a1 Prupe.3G104100_v2.0.a1
pyrus_communis	pycom09g14740 pycom17g23010
rosa_chinensis	RchiOBHm_Chr2g0132251 RchiOBHm_Chr4g0405371
rosa_laevigata	RLG00000008847 RLG00000019240
rosa_multiflora	Rmu_sc0006313.1_g000002 Rmu_sc0011487.1_g000002
rosa_roxburghii	Rroxscaffold_2G00112250 Rroxscaffold_5G00349830
rosa_rugosa	Rorug02G0303000 Rorug02G0303000 Rorug04G0057800
rosa_samantha	Rh2AG356200 Rh2BG362600 Rh2CG339700 Rh2DG379500 Rh4AG131300 Rh4BG125900 Rh4CG138400 Rh4DG125400
rosa_wichuraiana	Rw2G028940 Rw4G010640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	374
AatII	GACGTC	3 cut(s)	253, 378, 609
AccII	CGCG	4 cut(s)	450, 563, 638, 684
AciI	CCGC	6 cut(s)	122, 450, 563, 633, 636, 638
AclWI	GGATC	1 cut(s)	424
AcvI	CACGTG	1 cut(s)	296
AcyI	GRCGYC	4 cut(s)	165, 250, 375, 606
AfaI	GTAC	2 cut(s)	323, 575
AfiI	CCNNNNNNNGG	2 cut(s)	161, 400
AgsI	TTSAA	4 cut(s)	143, 319, 346, 862
AjnI	CCWGG	1 cut(s)	877
AjuI	GAANNNNNNNTTGG	4 cut(s)	396, 428, 495, 527
AluBI	AGCT	4 cut(s)	150, 222, 506, 777
AluI	AGCT	4 cut(s)	150, 222, 506, 777
Alw26I	GTCTC	2 cut(s)	16, 327
AlwI	GGATC	1 cut(s)	424
AlwNI	CAGNNNCTG	1 cut(s)	68
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	5 cut(s)	147, 287, 290, 311, 542
ArsI	GACNNNNNNTTYG	4 cut(s)	664, 696, 833, 865
Asp700I	GAANNNNTTC	1 cut(s)	759
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	905
AsuHPI	GGTGA	1 cut(s)	476
AsuII	TTCGAA	1 cut(s)	670
AvaII	GGWCC	1 cut(s)	905
BanII	GRGCYC	1 cut(s)	690
BbrPI	CACGTG	1 cut(s)	296
BbsI	GAAGAC	2 cut(s)	378, 846
BbvI	GCAGC	5 cut(s)	159, 299, 302, 323, 554
BccI	CCATC	3 cut(s)	174, 492, 748
BceAI	ACGGC	2 cut(s)	575, 597
BciT130I	CCWGG	1 cut(s)	879
BcoDI	GTCTC	2 cut(s)	16, 327
BfaI	CTAG	3 cut(s)	263, 507, 678
BisI	GCNGC	9 cut(s)	122, 148, 288, 291, 312, 543, 564, 633, 636
BlsI	GCNGC	9 cut(s)	123, 149, 289, 292, 313, 544, 565, 634, 637
BmcAI	AGTACT	1 cut(s)	323
Bme1390I	CCNGG	1 cut(s)	879
Bme18I	GGWCC	1 cut(s)	905
BmgT120I	GGNCC	1 cut(s)	905
BmrFI	CCNGG	1 cut(s)	879
BmrI	ACTGGG	2 cut(s)	195, 334
BmsI	GCATC	1 cut(s)	490
BmuI	ACTGGG	2 cut(s)	195, 334
BpiI	GAAGAC	2 cut(s)	378, 846
BplI	GAGNNNNNCTC	2 cut(s)	324, 356
Bpu14I	TTCGAA	1 cut(s)	670
BsaAI	YACGTR	1 cut(s)	296
BsaHI	GRCGYC	4 cut(s)	165, 250, 375, 606
BsaJI	CCNNGG	3 cut(s)	399, 577, 636
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 400
Bse1I	ACTGG	2 cut(s)	190, 329
Bse3DI	GCAATG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	879
BseDI	CCNNGG	3 cut(s)	399, 577, 636
BseGI	GGATG	2 cut(s)	98, 706
BseLI	CCNNNNNNNGG	2 cut(s)	161, 400
BseMI	GCAATG	1 cut(s)	87
BseMII	CTCAG	2 cut(s)	66, 825
BseNI	ACTGG	2 cut(s)	190, 329
BseRI	GAGGAG	2 cut(s)	34, 126
BseXI	GCAGC	5 cut(s)	159, 299, 302, 323, 554
Bsh1236I	CGCG	4 cut(s)	450, 563, 638, 684
BshFI	GGCC	1 cut(s)	393
BsiSI	CCGG	3 cut(s)	752, 772, 819
BslFI	GGGAC	1 cut(s)	342
BslI	CCNNNNNNNGG	2 cut(s)	161, 400
BsmAI	GTCTC	2 cut(s)	16, 327
BsmFI	GGGAC	1 cut(s)	342
BsnI	GGCC	1 cut(s)	393
Bsp119I	TTCGAA	1 cut(s)	670
Bsp1286I	GDGCHC	1 cut(s)	690
Bsp143I	GATC	1 cut(s)	416
Bsp68I	TCGCGA	1 cut(s)	684
BspACI	CCGC	6 cut(s)	122, 450, 563, 633, 636, 638
BspANI	GGCC	1 cut(s)	393
BspCNI	CTCAG	2 cut(s)	67, 826
BspFNI	CGCG	4 cut(s)	450, 563, 638, 684
BspPI	GGATC	1 cut(s)	424
BspT104I	TTCGAA	1 cut(s)	670
BsrDI	GCAATG	1 cut(s)	87
BsrI	ACTGG	2 cut(s)	190, 329
BssECI	CCNNGG	3 cut(s)	399, 577, 636
BssMI	GATC	1 cut(s)	416
BssNI	GRCGYC	4 cut(s)	165, 250, 375, 606
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	1 cut(s)	879
Bst4CI	ACNGT	1 cut(s)	578
Bst6I	CTCTTC	2 cut(s)	144, 399
BstACI	GRCGYC	4 cut(s)	165, 250, 375, 606
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstBAI	YACGTR	1 cut(s)	296
BstBI	TTCGAA	1 cut(s)	670
BstC8I	GCNNGC	1 cut(s)	686
BstDEI	CTNAG	4 cut(s)	75, 307, 660, 834
BstDSI	CCRYGG	2 cut(s)	577, 636
BstENI	CCTNNNNNAGG	1 cut(s)	159
BstF5I	GGATG	2 cut(s)	98, 706
BstFNI	CGCG	4 cut(s)	450, 563, 638, 684
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	1 cut(s)	419
BstMAI	GTCTC	2 cut(s)	16, 327
BstMBI	GATC	1 cut(s)	416
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 296, 548, 644, 681
BstNI	CCWGG	1 cut(s)	879
BstSCI	CCNGG	1 cut(s)	877
BstUI	CGCG	4 cut(s)	450, 563, 638, 684
BstV1I	GCAGC	5 cut(s)	159, 299, 302, 323, 554
BstV2I	GAAGAC	2 cut(s)	378, 846
BsuRI	GGCC	1 cut(s)	393
BtgI	CCRYGG	2 cut(s)	577, 636
BtgZI	GCGATG	2 cut(s)	544, 732
BtsCI	GGATG	2 cut(s)	98, 706
BtuMI	TCGCGA	1 cut(s)	684
Cac8I	GCNNGC	1 cut(s)	686
CaiI	CAGNNNCTG	1 cut(s)	68
CfoI	GCGC	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	905
Cfr42I	CCGCGG	1 cut(s)	639
CseI	GACGC	4 cut(s)	54, 60, 72, 154
Csp6I	GTAC	2 cut(s)	322, 574
CviQI	GTAC	2 cut(s)	322, 574
DdeI	CTNAG	4 cut(s)	75, 307, 660, 834
DpnI	GATC	1 cut(s)	418
DpnII	GATC	1 cut(s)	416
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
Eam1104I	CTCTTC	2 cut(s)	144, 399
EarI	CTCTTC	2 cut(s)	144, 399
Eco130I	CCWWGG	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	690
Eco32I	GATATC	1 cut(s)	790
Eco47I	GGWCC	1 cut(s)	905
Eco72I	CACGTG	1 cut(s)	296
EcoNI	CCTNNNNNAGG	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	877
EcoRV	GATATC	1 cut(s)	790
EcoT14I	CCWWGG	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	690
ErhI	CCWWGG	1 cut(s)	399
FaiI	YATR	8 cut(s)	177, 366, 411, 489, 870, 872, 888, 903
FaqI	GGGAC	1 cut(s)	342
Fnu4HI	GCNGC	9 cut(s)	122, 148, 288, 291, 312, 543, 564, 633, 636
FokI	GGATG	2 cut(s)	85, 713
FriOI	GRGCYC	1 cut(s)	690
Fsp4HI	GCNGC	9 cut(s)	122, 148, 288, 291, 312, 543, 564, 633, 636
FspBI	CTAG	3 cut(s)	263, 507, 678
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	9 cut(s)	122, 148, 288, 291, 312, 543, 564, 633, 636
HaeIII	GGCC	1 cut(s)	393
HapII	CCGG	3 cut(s)	752, 772, 819
HgaI	GACGC	4 cut(s)	54, 60, 72, 154
HhaI	GCGC	1 cut(s)	202
Hin1I	GRCGYC	4 cut(s)	165, 250, 375, 606
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	6 cut(s)	77, 650, 656, 692, 760, 815
HpaII	CCGG	3 cut(s)	752, 772, 819
HphI	GGTGA	1 cut(s)	476
Hpy166II	GTNNAC	2 cut(s)	40, 581
Hpy188I	TCNGA	5 cut(s)	76, 655, 700, 717, 724
Hpy188III	TCNNGA	4 cut(s)	343, 683, 793, 812
Hpy8I	GTNNAC	2 cut(s)	40, 581
Hpy99I	CGWCG	4 cut(s)	278, 608, 700, 788
HpyAV	CCTTC	2 cut(s)	383, 510
HpyCH4III	ACNGT	1 cut(s)	578
HpyCH4IV	ACGT	7 cut(s)	112, 250, 295, 375, 606, 797, 843
HpyCH4V	TGCA	1 cut(s)	476
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 296, 548, 644, 681
HpyF3I	CTNAG	4 cut(s)	75, 307, 660, 834
HpySE526I	ACGT	7 cut(s)	112, 250, 295, 375, 606, 797, 843
Hsp92I	GRCGYC	4 cut(s)	165, 250, 375, 606
HspAI	GCGC	1 cut(s)	200
KspI	CCGCGG	1 cut(s)	639
Kzo9I	GATC	1 cut(s)	416
LmnI	GCTCC	4 cut(s)	21, 139, 155, 774
LpnPI	CCDG	9 cut(s)	171, 208, 310, 765, 785, 806, 832, 864, 891
Lsp1109I	GCAGC	5 cut(s)	159, 299, 302, 323, 554
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	3 cut(s)	263, 507, 678
MaeII	ACGT	7 cut(s)	112, 250, 295, 375, 606, 797, 843
MaeIII	GTNAC	2 cut(s)	166, 592
MalI	GATC	1 cut(s)	418
MboI	GATC	1 cut(s)	416
MboII	GAAGA	8 cut(s)	131, 290, 293, 383, 416, 438, 548, 851
MhlI	GDGCHC	1 cut(s)	690
MluCI	AATT	3 cut(s)	510, 598, 862
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	2 cut(s)	678, 788
MnlI	CCTC	7 cut(s)	12, 135, 147, 155, 461, 718, 829
MroXI	GAANNNNTTC	1 cut(s)	759
MseI	TTAA	3 cut(s)	95, 585, 910
MslI	CAYNNNNRTG	1 cut(s)	489
MspA1I	CMGCKG	2 cut(s)	222, 638
MspI	CCGG	3 cut(s)	752, 772, 819
MspR9I	CCNGG	1 cut(s)	879
MvaI	CCWGG	1 cut(s)	879
MvnI	CGCG	4 cut(s)	450, 563, 638, 684
MwoI	GCNNNNNNNGC	5 cut(s)	89, 296, 548, 644, 681
NdeII	GATC	1 cut(s)	416
NmeAIII	GCCGAG	1 cut(s)	384
NmuCI	GTSAC	1 cut(s)	166
NruI	TCGCGA	1 cut(s)	684
NspV	TTCGAA	1 cut(s)	670
PcsI	WCGNNNNNNNCGW	1 cut(s)	849
PdmI	GAANNNNTTC	1 cut(s)	759
PfeI	GAWTC	5 cut(s)	650, 656, 692, 760, 815
PkrI	GCNGC	9 cut(s)	123, 149, 289, 292, 313, 544, 565, 634, 637
PleI	GAGTC	1 cut(s)	85
PmaCI	CACGTG	1 cut(s)	296
PmlI	CACGTG	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	85
Ppu21I	YACGTR	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	877
PspCI	CACGTG	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	877
PspPI	GGNCC	1 cut(s)	905
PstNI	CAGNNNCTG	1 cut(s)	68
PvuII	CAGCTG	1 cut(s)	222
RruI	TCGCGA	1 cut(s)	684
RsaI	GTAC	2 cut(s)	323, 575
RsaNI	GTAC	2 cut(s)	322, 574
RseI	CAYNNNNRTG	1 cut(s)	489
SacII	CCGCGG	1 cut(s)	639
SaqAI	TTAA	3 cut(s)	95, 585, 910
SatI	GCNGC	9 cut(s)	122, 148, 288, 291, 312, 543, 564, 633, 636
Sau3AI	GATC	1 cut(s)	416
Sau96I	GGNCC	1 cut(s)	905
ScaI	AGTACT	1 cut(s)	323
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	879
SduI	GDGCHC	1 cut(s)	690
SfaNI	GCATC	1 cut(s)	490
Sfr303I	CCGCGG	1 cut(s)	639
SfuI	TTCGAA	1 cut(s)	670
SgrBI	CCGCGG	1 cut(s)	639
SinI	GGWCC	1 cut(s)	905
SmiMI	CAYNNNNRTG	1 cut(s)	489
Sse9I	AATT	3 cut(s)	510, 598, 862
SsiI	CCGC	6 cut(s)	122, 450, 563, 633, 636, 638
SspI	AATATT	1 cut(s)	849
SspMI	CTAG	3 cut(s)	263, 507, 678
StyD4I	CCNGG	1 cut(s)	877
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	1 cut(s)	578
TaiI	ACGT	7 cut(s)	115, 253, 298, 378, 609, 800, 846
TaqI	TCGA	5 cut(s)	127, 603, 670, 735, 852
TasI	AATT	3 cut(s)	510, 598, 862
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	4 cut(s)	124, 566, 635, 638
TfiI	GAWTC	5 cut(s)	650, 656, 692, 760, 815
Tru1I	TTAA	3 cut(s)	95, 585, 910
Tru9I	TTAA	3 cut(s)	95, 585, 910
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	5 cut(s)	147, 287, 290, 311, 542
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	1 cut(s)	60
VpaK11BI	GGWCC	1 cut(s)	905
XagI	CCTNNNNNAGG	1 cut(s)	159
XcmI	CCANNNNNNNNNTGG	1 cut(s)	800
XmnI	GAANNNNTTC	1 cut(s)	759
XspI	CTAG	3 cut(s)	263, 507, 678
ZraI	GACGTC	3 cut(s)	251, 376, 607
ZrmI	AGTACT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.