Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011487.1

Orthogroup ID

OG0002197

Physical Location & Seq

Genomic Coordinates Forward (+)

10603 .. 12994

Gene Structure 2392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011487.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

atggccaagttatcacatcagaaccagaaaaccaatgcaagtaataatgcaactactactgctgctgttaataatgcaaatgcagctaataaaactgtagtcacaaaggtgaaacgaaccaggagaagtgtgccgagggactccccacctcaacgcagctccatttatcgaggcgtcaccaggcatcgatggactggccgatatgaggctcatctgtgggacaagaattgctggaatgaatcacaaaacaagaaaggccgccaaggagcatatgatgatgaagaagctgcagcacatgcttatgacttagcagcgcttaagtactggggtcaagataccattcttaactttccgttagctacatatcacaaagaaatgaatgatatggaaggccaatcaagagaggaatatattggatccttgagaaggaagagcagtggtttttctcgtggagtttccaaatacagagctacccaagaagaggctgcaacagcttatgacatggcagctatagagtatcgtggtctcaatgcagttaccaactttgatctcagccgttacatcaaatggctaaaaccaaatggtcctaacaatgacattattgcccagacatctaaccctaacgttgaagctaaattggttggaaatgtaacccaaaaccctaatgatcaagaccaaactggactaggtttcttccacaacctcgcatacagtcctcctgaagaaatcacaatgaccaagttgcctcggccgaccactgctacttcagccctaggactcctgcttcagtcatcaaagttcaaggagatgatggagatgacaacggccaccgactcatccatgacatcgtcatccctgccggaactgcctcagtgcacttttcccgatgacatacagacttacttcgactgccaagattctacgagctatggagatggagacgatgctatgttcagtgagctcaactcatacatcccgtccatgtttcaatgcgatttcaccgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

335

Amino Acids

37.57

Weight (kDa)

6.11

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G79700 AT1G79700 AT1G79700 AT1G79700
fragaria_vesca	FvH4_4g08800 FvH4_6g28200 FvH4_6g28200 FvH4_6g28200
malus_domestica	MD09G1228500.v1.1 MD16G1258700.v1.1 MD17G1226700.v1.1
prunus_persica	Prupe.1G101600_v2.0.a1 Prupe.3G104100_v2.0.a1
pyrus_communis	pycom09g14740 pycom17g23010
rosa_chinensis	RchiOBHm_Chr2g0132251 RchiOBHm_Chr4g0405371
rosa_laevigata	RLG00000008847 RLG00000019240
rosa_multiflora	Rmu_sc0006313.1_g000002 Rmu_sc0011487.1_g000002
rosa_roxburghii	Rroxscaffold_2G00112250 Rroxscaffold_5G00349830
rosa_rugosa	Rorug02G0303000 Rorug02G0303000 Rorug04G0057800
rosa_samantha	Rh2AG356200 Rh2BG362600 Rh2CG339700 Rh2DG379500 Rh4AG131300 Rh4BG125900 Rh4CG138400 Rh4DG125400
rosa_wichuraiana	Rw2G028940 Rw4G010640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	259
AclI	AACGTT	1 cut(s)	624
AclWI	GGATC	2 cut(s)	411, 424
AcoI	YGGCCR	4 cut(s)	3, 196, 749, 825
AcuI	CTGAAG	3 cut(s)	741, 750, 770
AcyI	GRCGYC	1 cut(s)	174
AfaI	GTAC	1 cut(s)	323
AfeI	AGCGCT	1 cut(s)	315
AfiI	CCNNNNNNNGG	3 cut(s)	205, 426, 481
AflII	CTTAAG	1 cut(s)	317
AgsI	TTSAA	3 cut(s)	629, 802, 989
AjnI	CCWGG	2 cut(s)	119, 179
AleI	CACNNNNGTG	1 cut(s)	107
Alw21I	GWGCWC	2 cut(s)	878, 963
Alw26I	GTCTC	2 cut(s)	530, 933
Alw44I	GTGCAC	1 cut(s)	874
AlwI	GGATC	2 cut(s)	411, 424
Aor51HI	AGCGCT	1 cut(s)	315
AoxI	GGCC	6 cut(s)	3, 196, 256, 391, 749, 825
ApaLI	GTGCAC	1 cut(s)	874
ApeKI	GCWGC	8 cut(s)	62, 83, 156, 287, 290, 311, 485, 506
AspA2I	CCTAGG	1 cut(s)	772
AspLEI	GCGC	1 cut(s)	316
AspS9I	GGNCC	1 cut(s)	584
AsuHPI	GGTGA	3 cut(s)	121, 169, 991
AvaII	GGWCC	1 cut(s)	584
AvrII	CCTAGG	1 cut(s)	772
BaeGI	GKGCMC	1 cut(s)	878
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	416
BanII	GRGCYC	1 cut(s)	963
BauI	CACGAG	1 cut(s)	447
Bbv12I	GWGCWC	2 cut(s)	878, 963
BbvI	GCAGC	8 cut(s)	49, 95, 168, 274, 302, 323, 472, 518
BccI	CCATC	3 cut(s)	183, 805, 929
BceAI	ACGGC	2 cut(s)	540, 840
BciT130I	CCWGG	2 cut(s)	121, 181
BclI	TGATCA	1 cut(s)	667
BcoDI	GTCTC	2 cut(s)	530, 933
BfaI	CTAG	3 cut(s)	686, 773, 1006
BfmI	CTRYAG	3 cut(s)	96, 288, 510
BfoI	RGCGCY	1 cut(s)	317
BfrI	CTTAAG	1 cut(s)	317
BisI	GCNGC	9 cut(s)	63, 84, 157, 259, 288, 291, 312, 486, 507
BlnI	CCTAGG	1 cut(s)	772
BlsI	GCNGC	9 cut(s)	64, 85, 158, 260, 289, 292, 313, 487, 508
BmcAI	AGTACT	1 cut(s)	323
Bme1390I	CCNGG	2 cut(s)	121, 181
Bme18I	GGWCC	1 cut(s)	584
BmgT120I	GGNCC	1 cut(s)	584
BmiI	GGNNCC	1 cut(s)	418
BmrFI	CCNGG	2 cut(s)	121, 181
BmrI	ACTGGG	1 cut(s)	334
BmsI	GCATC	2 cut(s)	193, 934
BmuI	ACTGGG	1 cut(s)	334
BplI	GAGNNNNNCTC	2 cut(s)	950, 982
BpuEI	CTTGAG	1 cut(s)	442
Bsa29I	ATCGAT	1 cut(s)	187
BsaHI	GRCGYC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	530
BsaJI	CCNNGG	4 cut(s)	134, 262, 746, 772
Bsc4I	CCNNNNNNNGG	3 cut(s)	205, 426, 481
Bse1I	ACTGG	3 cut(s)	199, 329, 685
BseBI	CCWGG	2 cut(s)	121, 181
BseCI	ATCGAT	1 cut(s)	187
BseDI	CCNNGG	4 cut(s)	134, 262, 746, 772
BseGI	GGATG	3 cut(s)	836, 851, 972
BseLI	CCNNNNNNNGG	3 cut(s)	205, 426, 481
BseMII	CTCAG	2 cut(s)	565, 884
BseNI	ACTGG	3 cut(s)	199, 329, 685
BseSI	GKGCMC	1 cut(s)	878
BseX3I	CGGCCG	1 cut(s)	749
BseXI	GCAGC	8 cut(s)	49, 95, 168, 274, 302, 323, 472, 518
Bsh1285I	CGRYCG	1 cut(s)	752
BshFI	GGCC	6 cut(s)	5, 198, 258, 393, 751, 827
BshVI	ATCGAT	1 cut(s)	187
BsiEI	CGRYCG	1 cut(s)	752
BsiHKAI	GWGCWC	2 cut(s)	878, 963
BsiSI	CCGG	1 cut(s)	860
BslFI	GGGAC	2 cut(s)	152, 233
BslI	CCNNNNNNNGG	3 cut(s)	205, 426, 481
BsmAI	GTCTC	2 cut(s)	530, 933
BsmBI	CGTCTC	1 cut(s)	933
BsmFI	GGGAC	2 cut(s)	152, 233
BsnI	GGCC	6 cut(s)	5, 198, 258, 393, 751, 827
Bso31I	GGTCTC	1 cut(s)	530
Bsp1286I	GDGCHC	2 cut(s)	878, 963
Bsp143I	GATC	3 cut(s)	416, 547, 667
BspACI	CCGC	1 cut(s)	259
BspANI	GGCC	6 cut(s)	5, 198, 258, 393, 751, 827
BspCNI	CTCAG	2 cut(s)	564, 883
BspDI	ATCGAT	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	418
BspMAI	CTGCAG	1 cut(s)	292
BspPI	GGATC	2 cut(s)	411, 424
BspQI	GCTCTTC	1 cut(s)	425
BspTI	CTTAAG	1 cut(s)	317
BspTNI	GGTCTC	1 cut(s)	530
BsrI	ACTGG	3 cut(s)	199, 329, 685
BssECI	CCNNGG	4 cut(s)	134, 262, 746, 772
BssMI	GATC	3 cut(s)	416, 547, 667
BssNI	GRCGYC	1 cut(s)	174
BssSI	CACGAG	1 cut(s)	447
BssT1I	CCWWGG	2 cut(s)	262, 772
Bst2BI	CACGAG	1 cut(s)	447
Bst2UI	CCWGG	2 cut(s)	121, 181
Bst4CI	ACNGT	3 cut(s)	97, 713, 1003
Bst6I	CTCTTC	2 cut(s)	425, 474
BstACI	GRCGYC	1 cut(s)	174
BstAFI	CTTAAG	1 cut(s)	317
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstDEI	CTNAG	3 cut(s)	307, 551, 870
BstENI	CCTNNNNNAGG	1 cut(s)	424
BstF5I	GGATG	3 cut(s)	836, 851, 972
BstH2I	RGCGCY	1 cut(s)	317
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	3 cut(s)	419, 550, 670
BstMAI	GTCTC	2 cut(s)	530, 933
BstMBI	GATC	3 cut(s)	416, 547, 667
BstMCI	CGRYCG	1 cut(s)	752
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 296, 491, 767, 865
BstNI	CCWGG	2 cut(s)	121, 181
BstNSI	RCATGY	1 cut(s)	299
BstSCI	CCNGG	2 cut(s)	119, 179
BstSFI	CTRYAG	3 cut(s)	96, 288, 510
BstSLI	GKGCMC	1 cut(s)	878
BstV1I	GCAGC	8 cut(s)	49, 95, 168, 274, 302, 323, 472, 518
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
BstZI	CGGCCG	1 cut(s)	749
Bsu15I	ATCGAT	1 cut(s)	187
BsuRI	GGCC	6 cut(s)	5, 198, 258, 393, 751, 827
BsuTUI	ATCGAT	1 cut(s)	187
BtsCI	GGATG	3 cut(s)	836, 851, 972
BtsI	GCAGTG	2 cut(s)	442, 756
BtsIMutI	CAGTG	4 cut(s)	442, 756, 878, 961
CfoI	GCGC	1 cut(s)	316
Cfr13I	GGNCC	1 cut(s)	584
ClaI	ATCGAT	1 cut(s)	187
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	4 cut(s)	296, 502, 841, 982
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	3 cut(s)	307, 551, 870
DpnI	GATC	3 cut(s)	418, 549, 669
DpnII	GATC	3 cut(s)	416, 547, 667
EaeI	YGGCCR	4 cut(s)	3, 196, 749, 825
EagI	CGGCCG	1 cut(s)	749
Eam1104I	CTCTTC	2 cut(s)	425, 474
EarI	CTCTTC	2 cut(s)	425, 474
Ecl136II	GAGCTC	1 cut(s)	961
EclXI	CGGCCG	1 cut(s)	749
Eco130I	CCWWGG	2 cut(s)	262, 772
Eco24I	GRGCYC	1 cut(s)	963
Eco31I	GGTCTC	1 cut(s)	530
Eco47I	GGWCC	1 cut(s)	584
Eco47III	AGCGCT	1 cut(s)	315
Eco52I	CGGCCG	1 cut(s)	749
Eco53kI	GAGCTC	1 cut(s)	961
Eco57I	CTGAAG	3 cut(s)	741, 750, 770
EcoICRI	GAGCTC	1 cut(s)	961
EcoNI	CCTNNNNNAGG	1 cut(s)	424
EcoRII	CCWGG	2 cut(s)	119, 179
EcoT14I	CCWWGG	2 cut(s)	262, 772
EcoT38I	GRGCYC	1 cut(s)	963
ErhI	CCWWGG	2 cut(s)	262, 772
Esp3I	CGTCTC	1 cut(s)	933
FaeI	CATG	4 cut(s)	299, 505, 844, 985
FaqI	GGGAC	2 cut(s)	152, 233
FatI	CATG	4 cut(s)	295, 501, 840, 981
FauNDI	CATATG	1 cut(s)	271
FbaI	TGATCA	1 cut(s)	667
Fnu4HI	GCNGC	9 cut(s)	63, 84, 157, 259, 288, 291, 312, 486, 507
FokI	GGATG	3 cut(s)	823, 838, 959
FriOI	GRGCYC	1 cut(s)	963
Fsp4HI	GCNGC	9 cut(s)	63, 84, 157, 259, 288, 291, 312, 486, 507
FspBI	CTAG	3 cut(s)	686, 773, 1006
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	9 cut(s)	63, 84, 157, 259, 288, 291, 312, 486, 507
HaeII	RGCGCY	1 cut(s)	317
HaeIII	GGCC	6 cut(s)	5, 198, 258, 393, 751, 827
HapII	CCGG	1 cut(s)	860
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	1 cut(s)	316
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	4 cut(s)	299, 505, 844, 985
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HinfI	GANTC	5 cut(s)	140, 239, 777, 833, 917
HpaII	CCGG	1 cut(s)	860
HphI	GGTGA	3 cut(s)	121, 169, 991
Hpy166II	GTNNAC	1 cut(s)	876
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	5 cut(s)	332, 399, 671, 719, 884
Hpy8I	GTNNAC	1 cut(s)	876
HpyAV	CCTTC	2 cut(s)	383, 420
HpyCH4III	ACNGT	3 cut(s)	97, 713, 1003
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	8 cut(s)	38, 50, 77, 83, 290, 488, 533, 876
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 296, 491, 767, 865
HpyF3I	CTNAG	3 cut(s)	307, 551, 870
HpySE526I	ACGT	1 cut(s)	624
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	4 cut(s)	299, 505, 844, 985
HspAI	GCGC	1 cut(s)	314
Ksp22I	TGATCA	1 cut(s)	667
Kzo9I	GATC	3 cut(s)	416, 547, 667
LguI	GCTCTTC	1 cut(s)	425
LmnI	GCTCC	2 cut(s)	164, 266
Lsp1109I	GCAGC	8 cut(s)	49, 95, 168, 274, 302, 323, 472, 518
LweI	GCATC	2 cut(s)	193, 934
MaeI	CTAG	3 cut(s)	686, 773, 1006
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	5 cut(s)	100, 175, 535, 557, 649
MalI	GATC	3 cut(s)	418, 549, 669
MboI	GATC	3 cut(s)	416, 547, 667
MboII	GAAGA	5 cut(s)	293, 442, 491, 685, 734
MflI	RGATCY	1 cut(s)	416
MhlI	GDGCHC	2 cut(s)	878, 963
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	226, 635
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	134, 771, 827
MmeI	TCCRAC	1 cut(s)	622
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	69, 318, 345
MslI	CAYNNNNRTG	2 cut(s)	107, 300
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	317
MspI	CCGG	1 cut(s)	860
MspR9I	CCNGG	2 cut(s)	121, 181
MvaI	CCWGG	2 cut(s)	121, 181
MwoI	GCNNNNNNNGC	5 cut(s)	83, 296, 491, 767, 865
NdeI	CATATG	1 cut(s)	271
NdeII	GATC	3 cut(s)	416, 547, 667
NlaIII	CATG	4 cut(s)	299, 505, 844, 985
NlaIV	GGNNCC	1 cut(s)	418
NmeAIII	GCCGAG	2 cut(s)	159, 727
NmuCI	GTSAC	2 cut(s)	100, 175
NspI	RCATGY	1 cut(s)	299
OliI	CACNNNNGTG	1 cut(s)	107
PciSI	GCTCTTC	1 cut(s)	425
PfeI	GAWTC	2 cut(s)	239, 917
PflFI	GACNNNGTC	1 cut(s)	847
PkrI	GCNGC	9 cut(s)	64, 85, 158, 260, 289, 292, 313, 487, 508
PleI	GAGTC	3 cut(s)	134, 771, 827
PpsI	GAGTC	3 cut(s)	134, 771, 827
Psp124BI	GAGCTC	1 cut(s)	963
Psp1406I	AACGTT	1 cut(s)	624
Psp6I	CCWGG	2 cut(s)	119, 179
PspGI	CCWGG	2 cut(s)	119, 179
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	1 cut(s)	584
PstI	CTGCAG	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	416
PsyI	GACNNNGTC	1 cut(s)	847
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	2 cut(s)	107, 300
SacI	GAGCTC	1 cut(s)	963
SapI	GCTCTTC	1 cut(s)	425
SaqAI	TTAA	3 cut(s)	69, 318, 345
SatI	GCNGC	9 cut(s)	63, 84, 157, 259, 288, 291, 312, 486, 507
Sau3AI	GATC	3 cut(s)	416, 547, 667
Sau96I	GGNCC	1 cut(s)	584
ScaI	AGTACT	1 cut(s)	323
SchI	GAGTC	3 cut(s)	134, 771, 827
ScrFI	CCNGG	2 cut(s)	121, 181
SduI	GDGCHC	2 cut(s)	878, 963
SfaNI	GCATC	2 cut(s)	193, 934
SfcI	CTRYAG	3 cut(s)	96, 288, 510
SinI	GGWCC	1 cut(s)	584
SmiMI	CAYNNNNRTG	2 cut(s)	107, 300
SmlI	CTYRAG	2 cut(s)	317, 421
SmoI	CTYRAG	2 cut(s)	317, 421
Sse9I	AATT	2 cut(s)	226, 635
SsiI	CCGC	1 cut(s)	259
SspMI	CTAG	3 cut(s)	686, 773, 1006
SstI	GAGCTC	1 cut(s)	963
StyD4I	CCNGG	2 cut(s)	119, 179
StyI	CCWWGG	2 cut(s)	262, 772
TaaI	ACNGT	3 cut(s)	97, 713, 1003
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	3 cut(s)	169, 187, 906
TasI	AATT	2 cut(s)	226, 635
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	2 cut(s)	239, 917
Tru1I	TTAA	3 cut(s)	69, 318, 345
Tru9I	TTAA	3 cut(s)	69, 318, 345
TscAI	CASTG	4 cut(s)	442, 763, 878, 961
TseFI	GTSAC	2 cut(s)	100, 175
TseI	GCWGC	8 cut(s)	62, 83, 156, 287, 290, 311, 485, 506
Tsp45I	GTSAC	2 cut(s)	100, 175
TspDTI	ATGAA	3 cut(s)	252, 294, 392
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	4 cut(s)	442, 763, 878, 961
Tth111I	GACNNNGTC	1 cut(s)	847
Vha464I	CTTAAG	1 cut(s)	317
VneI	GTGCAC	1 cut(s)	874
VpaK11BI	GGWCC	1 cut(s)	584
XagI	CCTNNNNNAGG	1 cut(s)	424
XceI	RCATGY	1 cut(s)	299
XmaJI	CCTAGG	1 cut(s)	772
XspI	CTAG	3 cut(s)	686, 773, 1006
ZrmI	AGTACT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.