Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002197

Physical Location & Seq

Genomic Coordinates Forward (+)

8204233 .. 8207634

Gene Structure 3402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G104100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCGAAAACCTCACAGCAAAACCAAAAGAACACTGCAAGCTCTAACAACAGCAACACCAACAACACCAATAGTACTGCTACAACAAAAGTCAAGCGGACGCGTAAAAGCGTCCGCCGTGACTCTCCGCCTCAGCGGAGCTCCATTTACCGGGGAGTCACAAGGCACCGATGGACGGGCCGATATGAAGCTCATTTGTGGGATAAGAATTGCTGGAATGAGTCCCAAAACAAGAAAGGAAGACAAGTTTATCTAGGAGCATATGATGATGAAGAAGCTGCTGCACGTGCTTATGACTTGGCAGCATTAAAGTACTGGGGACAAGATACAATCCTCAATTTCCCATTGGGCACTTACCCAGAAGAGCTCAAGGAAATGGAGAGCCAGTCGAAAGAAGAATACATTGGATCATTGAGGAGGAAAAGTAGTGGATTTTCTCGTGGAGTTTCAAAATATAGAGGCGTAGCAAGACATCATCATAATGGAAGATGGGAGGCTCGAATTGGCAGGGTTTTCGGTAACAAATATCTCTACCTTGGAACATATGCTACTCAAGAAGAAGCAGCAACAGCATATGACATGGCAGCCATAGAGTACCGTGGACTTAATGCTGTTACAAACTTCGACCTTAGCCGTTACATCAAGTCACTATGCCCAAATAATCAAAATGTTCCTAACAACGCTCAACCAAACCCTAATGATGACCTCGTTCCAATGCAGAACCCTAATTCGAAATTAGGGTTAGGGTTCATTCCTAATTACCACTCGAGTTCTAGTAGCGCTAGCGAGTCAACGGTAGCTTTGTCACGGCCAGGAAATGGTGCCTCAGCGTCATCGGCATTAGGACTTCTTCTACAATCCCCTAAGTTCAAGGAAATGCTTGAGAGAACCTCAACGTCGTCGACAGACTGCTCGTCGACGCTTTCAGTCCCAGACATACCACGCCGGAGTTTTCCTGATGACATTCAAACTTATTTTGATTGCCAAGACTTGAATAGCTACGCCGAAGGAGATGACATCATTTTTGGTGACTTACACTCGTTTGCTTCACCTGTTTTTCATTGTGAACTTGATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010033 GO:0010035 GO:0010187 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0040008 GO:0042221 GO:0042304 GO:0045723 GO:0045834 GO:0045923 GO:0046889 GO:0046890 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1900140 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

360

Amino Acids

40.18

Weight (kDa)

8.64

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G79700 AT1G79700 AT1G79700 AT1G79700
fragaria_vesca	FvH4_4g08800 FvH4_6g28200 FvH4_6g28200 FvH4_6g28200
malus_domestica	MD09G1228500.v1.1 MD16G1258700.v1.1 MD17G1226700.v1.1
prunus_persica	Prupe.1G101600_v2.0.a1 Prupe.3G104100_v2.0.a1
pyrus_communis	pycom09g14740 pycom17g23010
rosa_chinensis	RchiOBHm_Chr2g0132251 RchiOBHm_Chr4g0405371
rosa_laevigata	RLG00000008847 RLG00000019240
rosa_multiflora	Rmu_sc0006313.1_g000002 Rmu_sc0011487.1_g000002
rosa_roxburghii	Rroxscaffold_2G00112250 Rroxscaffold_5G00349830
rosa_rugosa	Rorug02G0303000 Rorug02G0303000 Rorug04G0057800
rosa_samantha	Rh2AG356200 Rh2BG362600 Rh2CG339700 Rh2DG379500 Rh4AG131300 Rh4BG125900 Rh4CG138400 Rh4DG125400
rosa_wichuraiana	Rw2G028940 Rw4G010640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	165, 821
AccB7I	CCANNNNNTGG	1 cut(s)	818
AccI	GTMKAC	2 cut(s)	902, 917
AccII	CGCG	1 cut(s)	103
AciI	CCGC	4 cut(s)	97, 115, 128, 136
AclWI	GGATC	1 cut(s)	415
AcoI	YGGCCR	1 cut(s)	809
AcvI	CACGTG	1 cut(s)	287
AfaI	GTAC	3 cut(s)	76, 314, 596
AfeI	AGCGCT	1 cut(s)	781
AfiI	CCNNNNNNNGG	3 cut(s)	150, 175, 818
AflIII	ACRYGT	1 cut(s)	101
AgsI	TTSAA	4 cut(s)	450, 871, 968, 994
AhdI	GACNNNNNGTC	1 cut(s)	913
AjnI	CCWGG	1 cut(s)	811
AjuI	GAANNNNNNNTTGG	2 cut(s)	387, 419
AluBI	AGCT	7 cut(s)	42, 141, 191, 278, 367, 800, 999
AluI	AGCT	7 cut(s)	42, 141, 191, 278, 367, 800, 999
Alw21I	GWGCWC	2 cut(s)	143, 369
AlwI	GGATC	1 cut(s)	415
Ama87I	CYCGRG	1 cut(s)	766
Aor51HI	AGCGCT	1 cut(s)	781
AoxI	GGCC	2 cut(s)	178, 809
ApeKI	GCWGC	5 cut(s)	278, 281, 302, 563, 584
ArsI	GACNNNNNNTTYG	2 cut(s)	1007, 1039
AspLEI	GCGC	1 cut(s)	782
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	2 cut(s)	1040, 1041
AsuII	TTCGAA	1 cut(s)	731
AsuNHI	GCTAGC	1 cut(s)	782
AvaI	CYCGRG	1 cut(s)	766
BaeGI	GKGCMC	1 cut(s)	353
BanI	GGYRCC	2 cut(s)	165, 821
BanII	GRGCYC	2 cut(s)	143, 369
BauI	CACGAG	1 cut(s)	438
BbrPI	CACGTG	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	247
Bbv12I	GWGCWC	2 cut(s)	143, 369
BbvCI	CCTCAGC	2 cut(s)	132, 826
BbvI	GCAGC	5 cut(s)	265, 268, 314, 575, 596
BccI	CCATC	2 cut(s)	165, 483
BceAI	ACGGC	3 cut(s)	102, 618, 824
BcgI	CGANNNNNNTGC	2 cut(s)	496, 530
BciT130I	CCWGG	1 cut(s)	813
BcnI	CCSGG	1 cut(s)	152
BfaI	CTAG	3 cut(s)	254, 774, 783
BfoI	RGCGCY	1 cut(s)	783
BisI	GCNGC	5 cut(s)	279, 282, 303, 564, 585
BlsI	GCNGC	5 cut(s)	280, 283, 304, 565, 586
BmcAI	AGTACT	2 cut(s)	76, 314
Bme1390I	CCNGG	2 cut(s)	152, 813
BmeRI	GACNNNNNGTC	1 cut(s)	913
BmeT110I	CYCGRG	1 cut(s)	766
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	2 cut(s)	167, 823
BmrFI	CCNGG	2 cut(s)	152, 813
BmrI	ACTGGG	1 cut(s)	325
BmsI	GCATC	1 cut(s)	1063
BmtI	GCTAGC	1 cut(s)	786
BmuI	ACTGGG	1 cut(s)	325
BpiI	GAAGAC	1 cut(s)	247
BplI	GAGNNNNNCTC	2 cut(s)	875, 907
Bpu10I	CCTNAGC	3 cut(s)	132, 629, 826
Bpu14I	TTCGAA	1 cut(s)	731
BpuEI	CTTGAG	3 cut(s)	353, 537, 902
BpuMI	CCSGG	1 cut(s)	152
BsaAI	YACGTR	1 cut(s)	287
BsaJI	CCNNGG	3 cut(s)	151, 535, 598
BsaXI	ACNNNNNCTCC	4 cut(s)	371, 401, 409, 439
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 175, 818
Bse1I	ACTGG	2 cut(s)	320, 385
BseBI	CCWGG	1 cut(s)	813
BseDI	CCNNGG	3 cut(s)	151, 535, 598
BseLI	CCNNNNNNNGG	3 cut(s)	150, 175, 818
BseMII	CTCAG	2 cut(s)	146, 840
BseNI	ACTGG	2 cut(s)	320, 385
BseRI	GAGGAG	1 cut(s)	430
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	5 cut(s)	265, 268, 314, 575, 596
BsgI	GTGCAG	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	103
BshFI	GGCC	2 cut(s)	180, 811
BshNI	GGYRCC	2 cut(s)	165, 821
BsiHKAI	GWGCWC	2 cut(s)	143, 369
BsiHKCI	CYCGRG	1 cut(s)	766
BsiSI	CCGG	2 cut(s)	151, 946
BslFI	GGGAC	3 cut(s)	208, 333, 914
BslI	CCNNNNNNNGG	3 cut(s)	150, 175, 818
BsmFI	GGGAC	3 cut(s)	208, 333, 914
BsnI	GGCC	2 cut(s)	180, 811
BsoBI	CYCGRG	1 cut(s)	766
Bsp119I	TTCGAA	1 cut(s)	731
Bsp1286I	GDGCHC	3 cut(s)	143, 353, 369
Bsp143I	GATC	1 cut(s)	407
BspACI	CCGC	4 cut(s)	97, 115, 128, 136
BspANI	GGCC	2 cut(s)	180, 811
BspCNI	CTCAG	2 cut(s)	145, 839
BspFNI	CGCG	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	167, 823
BspOI	GCTAGC	1 cut(s)	786
BspPI	GGATC	1 cut(s)	415
BspQI	GCTCTTC	1 cut(s)	357
BspT104I	TTCGAA	1 cut(s)	731
BspT107I	GGYRCC	2 cut(s)	165, 821
BsrI	ACTGG	2 cut(s)	320, 385
BssECI	CCNNGG	3 cut(s)	151, 535, 598
BssMI	GATC	1 cut(s)	407
BssSI	CACGAG	1 cut(s)	438
BssT1I	CCWWGG	1 cut(s)	535
Bst2BI	CACGAG	1 cut(s)	438
Bst2UI	CCWGG	1 cut(s)	813
Bst4CI	ACNGT	2 cut(s)	599, 796
Bst6I	CTCTTC	1 cut(s)	357
BstBAI	YACGTR	1 cut(s)	287
BstBI	TTCGAA	1 cut(s)	731
BstC8I	GCNNGC	2 cut(s)	40, 784
BstDEI	CTNAG	4 cut(s)	132, 629, 826, 864
BstDSI	CCRYGG	1 cut(s)	598
BstFNI	CGCG	1 cut(s)	103
BstH2I	RGCGCY	1 cut(s)	783
BstHHI	GCGC	1 cut(s)	782
BstKTI	GATC	1 cut(s)	410
BstMBI	GATC	1 cut(s)	407
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 569, 836
BstNI	CCWGG	1 cut(s)	813
BstSCI	CCNGG	2 cut(s)	150, 811
BstSLI	GKGCMC	1 cut(s)	353
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	5 cut(s)	265, 268, 314, 575, 596
BstV2I	GAAGAC	1 cut(s)	247
BsuRI	GGCC	2 cut(s)	180, 811
BtgI	CCRYGG	1 cut(s)	598
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	2 cut(s)	40, 784
CfoI	GCGC	1 cut(s)	782
Cfr13I	GGNCC	1 cut(s)	178
CseI	GACGC	4 cut(s)	100, 109, 819, 928
Csp6I	GTAC	3 cut(s)	75, 313, 595
CviAII	CATG	1 cut(s)	580
CviQI	GTAC	3 cut(s)	75, 313, 595
DdeI	CTNAG	4 cut(s)	132, 629, 826, 864
DpnI	GATC	1 cut(s)	409
DpnII	GATC	1 cut(s)	407
DriI	GACNNNNNGTC	1 cut(s)	913
EaeI	YGGCCR	1 cut(s)	809
Eam1104I	CTCTTC	1 cut(s)	357
Eam1105I	GACNNNNNGTC	1 cut(s)	913
EarI	CTCTTC	1 cut(s)	357
EciI	GGCGGA	2 cut(s)	104, 117
Ecl136II	GAGCTC	2 cut(s)	141, 367
Eco130I	CCWWGG	1 cut(s)	535
Eco24I	GRGCYC	2 cut(s)	143, 369
Eco47III	AGCGCT	1 cut(s)	781
Eco53kI	GAGCTC	2 cut(s)	141, 367
Eco72I	CACGTG	1 cut(s)	287
Eco88I	CYCGRG	1 cut(s)	766
EcoICRI	GAGCTC	2 cut(s)	141, 367
EcoRII	CCWGG	1 cut(s)	811
EcoT14I	CCWWGG	1 cut(s)	535
EcoT38I	GRGCYC	2 cut(s)	143, 369
ErhI	CCWWGG	1 cut(s)	535
FaeI	CATG	1 cut(s)	583
FaqI	GGGAC	3 cut(s)	208, 333, 914
FatI	CATG	1 cut(s)	579
FauNDI	CATATG	3 cut(s)	262, 544, 574
FblI	GTMKAC	2 cut(s)	902, 917
Fnu4HI	GCNGC	5 cut(s)	279, 282, 303, 564, 585
FriOI	GRGCYC	2 cut(s)	143, 369
Fsp4HI	GCNGC	5 cut(s)	279, 282, 303, 564, 585
FspBI	CTAG	3 cut(s)	254, 774, 783
GlaI	GCGC	1 cut(s)	781
GluI	GCNGC	5 cut(s)	279, 282, 303, 564, 585
HaeII	RGCGCY	1 cut(s)	783
HaeIII	GGCC	2 cut(s)	180, 811
HapII	CCGG	2 cut(s)	151, 946
HgaI	GACGC	4 cut(s)	100, 109, 819, 928
HhaI	GCGC	1 cut(s)	782
Hin1II	CATG	1 cut(s)	583
Hin6I	GCGC	1 cut(s)	780
HinP1I	GCGC	1 cut(s)	780
HincII	GTYRAC	3 cut(s)	792, 903, 918
HindII	GTYRAC	3 cut(s)	792, 903, 918
HinfI	GANTC	4 cut(s)	122, 156, 221, 788
HpaII	CCGG	2 cut(s)	151, 946
HphI	GGTGA	2 cut(s)	1040, 1041
Hpy166II	GTNNAC	5 cut(s)	602, 792, 903, 918, 1067
Hpy188III	TCNNGA	2 cut(s)	554, 956
Hpy8I	GTNNAC	5 cut(s)	602, 792, 903, 918, 1067
Hpy99I	CGWCG	4 cut(s)	901, 904, 919, 922
HpyAV	CCTTC	1 cut(s)	1001
HpyCH4III	ACNGT	2 cut(s)	599, 796
HpyCH4IV	ACGT	2 cut(s)	286, 896
HpyCH4V	TGCA	3 cut(s)	38, 284, 718
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 569, 836
HpyF3I	CTNAG	4 cut(s)	132, 629, 826, 864
HpySE526I	ACGT	2 cut(s)	286, 896
Hsp92II	CATG	1 cut(s)	583
HspAI	GCGC	1 cut(s)	780
Kzo9I	GATC	1 cut(s)	407
LguI	GCTCTTC	1 cut(s)	357
LmnI	GCTCC	3 cut(s)	138, 146, 257
Lsp1109I	GCAGC	5 cut(s)	265, 268, 314, 575, 596
LweI	GCATC	1 cut(s)	1063
MaeI	CTAG	3 cut(s)	254, 774, 783
MaeII	ACGT	2 cut(s)	286, 896
MaeIII	GTNAC	8 cut(s)	119, 157, 518, 613, 635, 645, 804, 1028
MalI	GATC	1 cut(s)	409
MboI	GATC	1 cut(s)	407
MboII	GAAGA	7 cut(s)	252, 284, 374, 407, 498, 569, 842
MhlI	GDGCHC	3 cut(s)	143, 353, 369
MluCI	AATT	6 cut(s)	208, 337, 501, 727, 734, 757
MluI	ACGCGT	1 cut(s)	101
MlyI	GAGTC	4 cut(s)	116, 165, 230, 797
MseI	TTAA	2 cut(s)	308, 606
MslI	CAYNNNNRTG	1 cut(s)	480
MspA1I	CMGCKG	1 cut(s)	136
MspI	CCGG	2 cut(s)	151, 946
MspR9I	CCNGG	2 cut(s)	152, 813
MvaI	CCWGG	1 cut(s)	813
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	3 cut(s)	287, 569, 836
NciI	CCSGG	1 cut(s)	152
NdeI	CATATG	3 cut(s)	262, 544, 574
NdeII	GATC	1 cut(s)	407
NheI	GCTAGC	1 cut(s)	782
NlaIII	CATG	1 cut(s)	583
NlaIV	GGNNCC	2 cut(s)	167, 823
NmuCI	GTSAC	5 cut(s)	119, 157, 645, 804, 1028
NspV	TTCGAA	1 cut(s)	731
PaeR7I	CTCGAG	1 cut(s)	766
PciSI	GCTCTTC	1 cut(s)	357
PflMI	CCANNNNNTGG	1 cut(s)	818
PkrI	GCNGC	5 cut(s)	280, 283, 304, 565, 586
PleI	GAGTC	4 cut(s)	116, 164, 229, 796
PmaCI	CACGTG	1 cut(s)	287
PmlI	CACGTG	1 cut(s)	287
PpsI	GAGTC	4 cut(s)	116, 164, 229, 796
Ppu21I	YACGTR	1 cut(s)	287
Psp124BI	GAGCTC	2 cut(s)	143, 369
Psp6I	CCWGG	1 cut(s)	811
PspCI	CACGTG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	811
PspN4I	GGNNCC	2 cut(s)	167, 823
PspPI	GGNCC	1 cut(s)	178
PspXI	VCTCGAGB	1 cut(s)	766
PsrI	GAACNNNNNNTAC	2 cut(s)	532, 564
RsaI	GTAC	3 cut(s)	76, 314, 596
RsaNI	GTAC	3 cut(s)	75, 313, 595
RseI	CAYNNNNRTG	1 cut(s)	480
SacI	GAGCTC	2 cut(s)	143, 369
SalI	GTCGAC	2 cut(s)	901, 916
SapI	GCTCTTC	1 cut(s)	357
SaqAI	TTAA	2 cut(s)	308, 606
SatI	GCNGC	5 cut(s)	279, 282, 303, 564, 585
Sau3AI	GATC	1 cut(s)	407
Sau96I	GGNCC	1 cut(s)	178
ScaI	AGTACT	2 cut(s)	76, 314
SchI	GAGTC	4 cut(s)	116, 165, 230, 797
ScrFI	CCNGG	2 cut(s)	152, 813
SduI	GDGCHC	3 cut(s)	143, 353, 369
SfaNI	GCATC	1 cut(s)	1063
Sfr274I	CTCGAG	1 cut(s)	766
SfuI	TTCGAA	1 cut(s)	731
SgrDI	CGTCGACG	1 cut(s)	916
SlaI	CTCGAG	1 cut(s)	766
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	4 cut(s)	368, 552, 766, 881
SmoI	CTYRAG	4 cut(s)	368, 552, 766, 881
Sse9I	AATT	6 cut(s)	208, 337, 501, 727, 734, 757
SsiI	CCGC	4 cut(s)	97, 115, 128, 136
SspMI	CTAG	3 cut(s)	254, 774, 783
SstI	GAGCTC	2 cut(s)	143, 369
StyD4I	CCNGG	2 cut(s)	150, 811
StyI	CCWWGG	1 cut(s)	535
TaaI	ACNGT	2 cut(s)	599, 796
TaiI	ACGT	2 cut(s)	289, 899
TaqI	TCGA	7 cut(s)	389, 499, 624, 731, 767, 902, 917
TasI	AATT	6 cut(s)	208, 337, 501, 727, 734, 757
TatI	WGTACW	2 cut(s)	74, 312
Tru1I	TTAA	2 cut(s)	308, 606
Tru9I	TTAA	2 cut(s)	308, 606
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	5 cut(s)	119, 157, 645, 804, 1028
TseI	GCWGC	5 cut(s)	278, 281, 302, 563, 584
Tsp45I	GTSAC	5 cut(s)	119, 157, 645, 804, 1028
TspDTI	ATGAA	4 cut(s)	201, 285, 739, 1049
TspRI	CASTG	1 cut(s)	40
Van91I	CCANNNNNTGG	1 cut(s)	818
XhoI	CTCGAG	1 cut(s)	766
XmiI	GTMKAC	2 cut(s)	902, 917
XspI	CTAG	3 cut(s)	254, 774, 783
ZrmI	AGTACT	2 cut(s)	76, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.