FvH4_4g08800

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
9464519 .. 9467158
2640 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08800.t1

Sequence Viewer

Length: 1110 bp
ATGGCCAAGTTATCAAATCAGAACCAGAAAGCCAATGGAAATAATAATGCAACTACTACTGCTACTGCTGTGAATAATGCAAATGCAGTTAATAAAACTGCAGTCACGAAGGTGAAACGAACGAGGAGAAGTGTGCCGAGAGACTCCCCGCCTCAACGCAGCTCCATTTATCGAGGCGTCACAAGGCACCGATGGACTGGCCGTTATGAGGCTCATCTGTGGGACAAGAATTGCTGGAATGAATCACAAAACAAGAAAGGCCGTCAAGGAGCATATGATGATGAAGAAGCTGCAGCACATGCTTATGACTTGGCAGCGCTGAAGTACTGGGGTCAAGATACAATTCTCAACTTTCCGTTAGCGACATATCAAAAAGAAATGAATGATATGGAAGGCCAATCAAGAGAGGAATATATTGGATCCTTGAGAAGGAAGAGCAGTGGTTTTTCTCGTGGAGTTTCTAAATATAGAGGTGTTGCTAGACATCATCATAATGGAAGATGGGAAGCTCGAATTGGCCGGGTCTTTGGAAACAAGTATCTCTATCTCGGGACATATGCTACCCAAGAAGAGGCTGCTACAGCATATGACATGGCAGCTATAGAGTATCGTGGTCTCAATGCAGTAACCAACTTCGATCTCAGCCGTTACATTAAATGGCTAAAACCAAATGGTCCTAACAATGACATTATTGGCCAGGCAATAACTAACCCTACAACTGAAGCTAAATTGGTCGGAGATGTAACCCAAAACCCTAATGAGCTAGACCAAACTGGACTAGGTTTCTTCCACAACCTTGCATACAGTCCTCCCGAAGAAACCATGATGGCTCAGCTGCCTCGGCCGACCACTGCTACATCAGCCCTAGGGCTCCTACTTCAATCATCAAAGTTCAAGGAGATGATGGAGATGACCACGGCCACTGACAGTTCATCGATGATCATGACATCGTCGTCGACGCCGGAACTGCACCAATGCACGTTTCCCGACGACATACAAACTTACTTTGATTGCCAGGATTCTACTAGCTATGGAGATGGAGACGATGCTATGTTCAATGAGCTCAACTCATTCATCCCGTCCATGTTTCAATGCGATTTCACCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

370

Amino Acids

41.46

Weight (kDa)

6.72

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 57 - 111 3.3e-07 AP2 domain
AP2 PF00847 154 - 205 2.1e-11 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 952
AccB1I GGYRCC 1 cut(s) 186
AccI GTMKAC 1 cut(s) 956
AciI CCGC 1 cut(s) 149
AclWI GGATC 2 cut(s) 414, 427
AcoI YGGCCR 6 cut(s) 3, 199, 517, 694, 842, 918
AcuI CTGAAG 2 cut(s) 341, 741
AcyI GRCGYC 2 cut(s) 177, 959
AfaI GTAC 1 cut(s) 326
AfeI AGCGCT 1 cut(s) 318
AfiI CCNNNNNNNGG 3 cut(s) 208, 429, 571
AgsI TTSAA 4 cut(s) 881, 895, 1057, 1091
AjnI CCWGG 2 cut(s) 696, 1014
AjuI GAANNNNNNNTTGG 4 cut(s) 498, 530, 966, 998
AleI CACNNNNGTG 1 cut(s) 110
AluBI AGCT 9 cut(s) 162, 290, 509, 599, 725, 763, 835, 1029, 1063
AluI AGCT 9 cut(s) 162, 290, 509, 599, 725, 763, 835, 1029, 1063
Alw21I GWGCWC 1 cut(s) 1065
Alw26I GTCTC 3 cut(s) 135, 620, 1035
AlwI GGATC 2 cut(s) 414, 427
Ama87I CYCGRG 1 cut(s) 548
Aor51HI AGCGCT 1 cut(s) 318
AoxI GGCC 8 cut(s) 3, 199, 259, 394, 517, 694, 842, 918
ApeKI GCWGC 7 cut(s) 159, 290, 293, 314, 575, 596, 835
AspA2I CCTAGG 1 cut(s) 865
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 674
AsuC2I CCSGG 1 cut(s) 521
AsuHPI GGTGA 2 cut(s) 124, 1093
AvaI CYCGRG 1 cut(s) 548
AvaII GGWCC 1 cut(s) 674
AvrII CCTAGG 1 cut(s) 865
BalI TGGCCA 2 cut(s) 5, 696
BamHI GGATCC 1 cut(s) 419
BanI GGYRCC 1 cut(s) 186
BanII GRGCYC 2 cut(s) 873, 1065
BauI CACGAG 1 cut(s) 450
Bbv12I GWGCWC 1 cut(s) 1065
BbvI GCAGC 7 cut(s) 171, 277, 305, 326, 562, 608, 822
BccI CCATC 5 cut(s) 186, 495, 820, 898, 1031
BceAI ACGGC 4 cut(s) 186, 246, 630, 933
BciT130I CCWGG 2 cut(s) 698, 1016
BclI TGATCA 1 cut(s) 939
BcnI CCSGG 1 cut(s) 521
BcoDI GTCTC 3 cut(s) 135, 620, 1035
BfaI CTAG 6 cut(s) 480, 764, 779, 866, 1026, 1108
BfmI CTRYAG 4 cut(s) 99, 291, 579, 600
BfoI RGCGCY 1 cut(s) 320
BisI GCNGC 7 cut(s) 160, 291, 294, 315, 576, 597, 836
BlnI CCTAGG 1 cut(s) 865
BlpI GCTNAGC 1 cut(s) 831
BlsI GCNGC 7 cut(s) 161, 292, 295, 316, 577, 598, 837
BmcAI AGTACT 1 cut(s) 326
Bme1390I CCNGG 3 cut(s) 521, 698, 1016
Bme18I GGWCC 1 cut(s) 674
BmeT110I CYCGRG 1 cut(s) 548
BmgT120I GGNCC 1 cut(s) 674
BmiI GGNNCC 3 cut(s) 188, 421, 872
BmrFI CCNGG 3 cut(s) 521, 698, 1016
BmrI ACTGGG 1 cut(s) 337
BmsI GCATC 1 cut(s) 1036
BmuI ACTGGG 1 cut(s) 337
BplI GAGNNNNNCTC 2 cut(s) 1052, 1084
Bpu1102I GCTNAGC 1 cut(s) 831
BpuEI CTTGAG 1 cut(s) 445
BpuMI CCSGG 1 cut(s) 521
Bsa29I ATCGAT 1 cut(s) 935
BsaHI GRCGYC 2 cut(s) 177, 959
BsaI GGTCTC 1 cut(s) 620
BsaJI CCNNGG 3 cut(s) 839, 865, 915
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 429, 571
Bse1I ACTGG 3 cut(s) 202, 332, 778
BseBI CCWGG 2 cut(s) 698, 1016
BseCI ATCGAT 1 cut(s) 935
BseDI CCNNGG 3 cut(s) 839, 865, 915
BseGI GGATG 1 cut(s) 1074
BseLI CCNNNNNNNGG 3 cut(s) 208, 429, 571
BseMII CTCAG 2 cut(s) 655, 845
BseNI ACTGG 3 cut(s) 202, 332, 778
BseRI GAGGAG 1 cut(s) 139
BseX3I CGGCCG 1 cut(s) 842
BseXI GCAGC 7 cut(s) 171, 277, 305, 326, 562, 608, 822
BsgI GTGCAG 1 cut(s) 953
Bsh1285I CGRYCG 1 cut(s) 845
BshFI GGCC 8 cut(s) 5, 201, 261, 396, 519, 696, 844, 920
BshNI GGYRCC 1 cut(s) 186
BshVI ATCGAT 1 cut(s) 935
BsiEI CGRYCG 1 cut(s) 845
BsiHKAI GWGCWC 1 cut(s) 1065
BsiHKCI CYCGRG 1 cut(s) 548
BsiSI CCGG 2 cut(s) 520, 962
BslFI GGGAC 2 cut(s) 236, 565
BslI CCNNNNNNNGG 3 cut(s) 208, 429, 571
BsmAI GTCTC 3 cut(s) 135, 620, 1035
BsmBI CGTCTC 1 cut(s) 1035
BsmFI GGGAC 2 cut(s) 236, 565
BsnI GGCC 8 cut(s) 5, 201, 261, 396, 519, 696, 844, 920
Bso31I GGTCTC 1 cut(s) 620
BsoBI CYCGRG 1 cut(s) 548
Bsp1286I GDGCHC 2 cut(s) 873, 1065
Bsp143I GATC 3 cut(s) 419, 637, 939
Bsp1720I GCTNAGC 1 cut(s) 831
BspACI CCGC 1 cut(s) 149
BspANI GGCC 8 cut(s) 5, 201, 261, 396, 519, 696, 844, 920
BspCNI CTCAG 2 cut(s) 654, 844
BspDI ATCGAT 1 cut(s) 935
BspHI TCATGA 1 cut(s) 942
BspLI GGNNCC 3 cut(s) 188, 421, 872
BspMAI CTGCAG 2 cut(s) 103, 295
BspPI GGATC 2 cut(s) 414, 427
BspQI GCTCTTC 1 cut(s) 428
BspT107I GGYRCC 1 cut(s) 186
BspTNI GGTCTC 1 cut(s) 620
BsrI ACTGG 3 cut(s) 202, 332, 778
BssECI CCNNGG 3 cut(s) 839, 865, 915
BssMI GATC 3 cut(s) 419, 637, 939
BssNI GRCGYC 2 cut(s) 177, 959
BssSI CACGAG 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 865
Bst2BI CACGAG 1 cut(s) 450
Bst2UI CCWGG 2 cut(s) 698, 1016
Bst4CI ACNGT 3 cut(s) 806, 929, 1105
Bst6I CTCTTC 2 cut(s) 428, 564
BstACI GRCGYC 2 cut(s) 177, 959
BstAPI GCANNNNNTGC 1 cut(s) 299
BstDEI CTNAG 2 cut(s) 641, 831
BstDSI CCRYGG 1 cut(s) 915
BstENI CCTNNNNNAGG 1 cut(s) 427
BstF5I GGATG 1 cut(s) 1074
BstH2I RGCGCY 1 cut(s) 320
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 3 cut(s) 422, 640, 942
BstMAI GTCTC 3 cut(s) 135, 620, 1035
BstMBI GATC 3 cut(s) 419, 637, 939
BstMCI CGRYCG 1 cut(s) 845
BstMWI GCNNNNNNNGC 5 cut(s) 299, 581, 841, 860, 967
BstNI CCWGG 2 cut(s) 698, 1016
BstNSI RCATGY 1 cut(s) 302
BstSCI CCNGG 3 cut(s) 519, 696, 1014
BstSFI CTRYAG 4 cut(s) 99, 291, 579, 600
BstV1I GCAGC 7 cut(s) 171, 277, 305, 326, 562, 608, 822
BstX2I RGATCY 1 cut(s) 419
BstYI RGATCY 1 cut(s) 419
BstZI CGGCCG 1 cut(s) 842
Bsu15I ATCGAT 1 cut(s) 935
BsuRI GGCC 8 cut(s) 5, 201, 261, 396, 519, 696, 844, 920
BsuTUI ATCGAT 1 cut(s) 935
BtgI CCRYGG 1 cut(s) 915
BtsCI GGATG 1 cut(s) 1074
BtsI GCAGTG 2 cut(s) 445, 849
BtsIMutI CAGTG 3 cut(s) 445, 849, 921
CciI TCATGA 1 cut(s) 942
CfoI GCGC 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 674
ClaI ATCGAT 1 cut(s) 935
CseI GACGC 2 cut(s) 166, 967
Csp6I GTAC 1 cut(s) 325
CviAII CATG 5 cut(s) 299, 592, 823, 943, 1084
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 2 cut(s) 641, 831
DpnI GATC 3 cut(s) 421, 639, 941
DpnII GATC 3 cut(s) 419, 637, 939
DrdI GACNNNNNNGTC 1 cut(s) 952
DseDI GACNNNNNNGTC 1 cut(s) 952
EaeI YGGCCR 6 cut(s) 3, 199, 517, 694, 842, 918
EagI CGGCCG 1 cut(s) 842
Eam1104I CTCTTC 2 cut(s) 428, 564
EarI CTCTTC 2 cut(s) 428, 564
Ecl136II GAGCTC 1 cut(s) 1063
EclXI CGGCCG 1 cut(s) 842
Eco130I CCWWGG 1 cut(s) 865
Eco24I GRGCYC 2 cut(s) 873, 1065
Eco31I GGTCTC 1 cut(s) 620
Eco47I GGWCC 1 cut(s) 674
Eco47III AGCGCT 1 cut(s) 318
Eco52I CGGCCG 1 cut(s) 842
Eco53kI GAGCTC 1 cut(s) 1063
Eco57I CTGAAG 2 cut(s) 341, 741
Eco88I CYCGRG 1 cut(s) 548
EcoICRI GAGCTC 1 cut(s) 1063
EcoNI CCTNNNNNAGG 1 cut(s) 427
EcoRII CCWGG 2 cut(s) 696, 1014
EcoT14I CCWWGG 1 cut(s) 865
EcoT38I GRGCYC 2 cut(s) 873, 1065
ErhI CCWWGG 1 cut(s) 865
Esp3I CGTCTC 1 cut(s) 1035
FaeI CATG 5 cut(s) 302, 595, 826, 946, 1087
FaqI GGGAC 2 cut(s) 236, 565
FatI CATG 5 cut(s) 298, 591, 822, 942, 1083
FauI CCCGC 1 cut(s) 156
FauNDI CATATG 3 cut(s) 274, 556, 586
FbaI TGATCA 1 cut(s) 939
FblI GTMKAC 1 cut(s) 956
Fnu4HI GCNGC 7 cut(s) 160, 291, 294, 315, 576, 597, 836
FokI GGATG 1 cut(s) 1061
FriOI GRGCYC 2 cut(s) 873, 1065
Fsp4HI GCNGC 7 cut(s) 160, 291, 294, 315, 576, 597, 836
FspBI CTAG 6 cut(s) 480, 764, 779, 866, 1026, 1108
GlaI GCGC 1 cut(s) 318
GluI GCNGC 7 cut(s) 160, 291, 294, 315, 576, 597, 836
HaeII RGCGCY 1 cut(s) 320
HaeIII GGCC 8 cut(s) 5, 201, 261, 396, 519, 696, 844, 920
HapII CCGG 2 cut(s) 520, 962
HgaI GACGC 2 cut(s) 166, 967
HhaI GCGC 1 cut(s) 319
Hin1I GRCGYC 2 cut(s) 177, 959
Hin1II CATG 5 cut(s) 302, 595, 826, 946, 1087
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HincII GTYRAC 1 cut(s) 957
HindII GTYRAC 1 cut(s) 957
HinfI GANTC 3 cut(s) 143, 242, 1019
HpaII CCGG 2 cut(s) 520, 962
HphI GGTGA 2 cut(s) 124, 1093
Hpy166II GTNNAC 1 cut(s) 957
Hpy188I TCNGA 2 cut(s) 21, 737
Hpy188III TCNNGA 7 cut(s) 106, 335, 402, 550, 812, 943, 986
Hpy8I GTNNAC 1 cut(s) 957
Hpy99I CGWCG 4 cut(s) 955, 958, 961, 992
HpyAV CCTTC 3 cut(s) 103, 386, 423
HpyCH4III ACNGT 3 cut(s) 806, 929, 1105
HpyCH4IV ACGT 1 cut(s) 980
HpyCH4V TGCA 9 cut(s) 50, 80, 86, 101, 293, 623, 800, 970, 978
HpyF10VI GCNNNNNNNGC 5 cut(s) 299, 581, 841, 860, 967
HpyF3I CTNAG 2 cut(s) 641, 831
HpySE526I ACGT 1 cut(s) 980
Hsp92I GRCGYC 2 cut(s) 177, 959
Hsp92II CATG 5 cut(s) 302, 595, 826, 946, 1087
HspAI GCGC 1 cut(s) 317
Ksp22I TGATCA 1 cut(s) 939
Kzo9I GATC 3 cut(s) 419, 637, 939
LguI GCTCTTC 1 cut(s) 428
LmnI GCTCC 3 cut(s) 167, 269, 876
Lsp1109I GCAGC 7 cut(s) 171, 277, 305, 326, 562, 608, 822
LweI GCATC 1 cut(s) 1036
MaeI CTAG 6 cut(s) 480, 764, 779, 866, 1026, 1108
MaeII ACGT 1 cut(s) 980
MaeIII GTNAC 5 cut(s) 103, 178, 625, 647, 742
MalI GATC 3 cut(s) 421, 639, 941
MboI GATC 3 cut(s) 419, 637, 939
MboII GAAGA 6 cut(s) 296, 445, 510, 581, 778, 827
MflI RGATCY 1 cut(s) 419
MhlI GDGCHC 2 cut(s) 873, 1065
MlsI TGGCCA 2 cut(s) 5, 696
MluCI AATT 4 cut(s) 229, 342, 513, 728
MluNI TGGCCA 2 cut(s) 5, 696
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 715
MnlI CCTC 9 cut(s) 117, 162, 167, 202, 400, 464, 565, 819, 849
Mox20I TGGCCA 2 cut(s) 5, 696
MscI TGGCCA 2 cut(s) 5, 696
MseI TTAA 2 cut(s) 90, 654
MslI CAYNNNNRTG 3 cut(s) 110, 303, 492
Msp20I TGGCCA 2 cut(s) 5, 696
MspA1I CMGCKG 1 cut(s) 835
MspI CCGG 2 cut(s) 520, 962
MspR9I CCNGG 3 cut(s) 521, 698, 1016
MvaI CCWGG 2 cut(s) 698, 1016
MwoI GCNNNNNNNGC 5 cut(s) 299, 581, 841, 860, 967
NciI CCSGG 1 cut(s) 521
NdeI CATATG 3 cut(s) 274, 556, 586
NdeII GATC 3 cut(s) 419, 637, 939
NlaIII CATG 5 cut(s) 302, 595, 826, 946, 1087
NlaIV GGNNCC 3 cut(s) 188, 421, 872
NmeAIII GCCGAG 2 cut(s) 162, 820
NmuCI GTSAC 2 cut(s) 103, 178
NspI RCATGY 1 cut(s) 302
OliI CACNNNNGTG 1 cut(s) 110
PagI TCATGA 1 cut(s) 942
PciSI GCTCTTC 1 cut(s) 428
PfeI GAWTC 2 cut(s) 242, 1019
PflFI GACNNNGTC 1 cut(s) 949
PkrI GCNGC 7 cut(s) 161, 292, 295, 316, 577, 598, 837
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
Psp124BI GAGCTC 1 cut(s) 1065
Psp6I CCWGG 2 cut(s) 696, 1014
PspGI CCWGG 2 cut(s) 696, 1014
PspN4I GGNNCC 3 cut(s) 188, 421, 872
PspPI GGNCC 1 cut(s) 674
PstI CTGCAG 2 cut(s) 103, 295
PsuI RGATCY 1 cut(s) 419
PsyI GACNNNGTC 1 cut(s) 949
PvuII CAGCTG 1 cut(s) 835
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 3 cut(s) 110, 303, 492
SacI GAGCTC 1 cut(s) 1065
SalI GTCGAC 1 cut(s) 955
SapI GCTCTTC 1 cut(s) 428
SaqAI TTAA 2 cut(s) 90, 654
SatI GCNGC 7 cut(s) 160, 291, 294, 315, 576, 597, 836
Sau3AI GATC 3 cut(s) 419, 637, 939
Sau96I GGNCC 1 cut(s) 674
ScaI AGTACT 1 cut(s) 326
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 3 cut(s) 521, 698, 1016
SduI GDGCHC 2 cut(s) 873, 1065
SfaNI GCATC 1 cut(s) 1036
SfcI CTRYAG 4 cut(s) 99, 291, 579, 600
SgrDI CGTCGACG 1 cut(s) 955
SinI GGWCC 1 cut(s) 674
SmiMI CAYNNNNRTG 3 cut(s) 110, 303, 492
SmlI CTYRAG 1 cut(s) 424
SmoI CTYRAG 1 cut(s) 424
Sse9I AATT 4 cut(s) 229, 342, 513, 728
SsiI CCGC 1 cut(s) 149
SspMI CTAG 6 cut(s) 480, 764, 779, 866, 1026, 1108
SstI GAGCTC 1 cut(s) 1065
StyD4I CCNGG 3 cut(s) 519, 696, 1014
StyI CCWWGG 1 cut(s) 865
TaaI ACNGT 3 cut(s) 806, 929, 1105
TaiI ACGT 1 cut(s) 983
TaqI TCGA 5 cut(s) 172, 511, 636, 935, 956
TasI AATT 4 cut(s) 229, 342, 513, 728
TatI WGTACW 1 cut(s) 324
TfiI GAWTC 2 cut(s) 242, 1019
Tru1I TTAA 2 cut(s) 90, 654
Tru9I TTAA 2 cut(s) 90, 654
TscAI CASTG 3 cut(s) 445, 856, 928
TseFI GTSAC 2 cut(s) 103, 178
TseI GCWGC 7 cut(s) 159, 290, 293, 314, 575, 596, 835
Tsp45I GTSAC 2 cut(s) 103, 178
TspDTI ATGAA 5 cut(s) 255, 297, 395, 921, 1063
TspGWI ACGGA 1 cut(s) 345
TspRI CASTG 3 cut(s) 445, 856, 928
Tth111I GACNNNGTC 1 cut(s) 949
VpaK11BI GGWCC 1 cut(s) 674
XagI CCTNNNNNAGG 1 cut(s) 427
XceI RCATGY 1 cut(s) 302
XcmI CCANNNNNNNNNTGG 1 cut(s) 32
XmaJI CCTAGG 1 cut(s) 865
XmiI GTMKAC 1 cut(s) 956
XspI CTAG 6 cut(s) 480, 764, 779, 866, 1026, 1108
ZrmI AGTACT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.