Rh4DG125400

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
20348415 .. 20350840
2426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG125400.1

Sequence Viewer

Length: 1095 bp
ATGGCCAAGTTATCACCTCAGAACCAGAAAACCAATGCAAGTAATAATGCAACTACTACTGCTGCTGTTAATAATGCAAATGCAGCTAATAAAACTGTAGTCACAAAGGTGAAACGAACCAGGAGAAGTGTGCCGAGGGACTCCCCACCTCAACGCAGCTCCATTTATCGAGGCGTCACCAGGCATCGATGGACTGGCCGATATGAGGCTCATCTGTGGGACAAGAATTGCTGGAATGAATCACAAAACAAGAAAGGCCGCCAAGGAGCATATGATGATGAAGAAGCTGCAGCACATGCTTATGACTTAGCAGCGCTTAAGTACTGGGGTCAAGATACCATTCTTAACTTTCCGTTAGCTACATATCACAAAGAAATGAATGATATGGAAGGCCAATCAAGAGAGGAATATATTGGATCCTTGAGAAGGAAGAGCAGTGGTTTTTCTCGTGGAGTTTCCAAATACAGAGGTGTTGCTAGACATCATCACAATGGAAGATGGGAAGCTCGAATTGGCCGGGTCTTTGGAAACAAATATCTCTATCTAGGGACATATGCTACCCAAGAAGAGGCTGCAACAGCTTATGACATGGCAGCTATAGAGTATCGTGGTCTCAATGCAGTTACCAACTTTGATCTCAGCCGTTACATCAAATGGCTAAAACCAAATGGTCCTAACAATGACATTATTGCCCAGACAACTAACCCTAACGTTGAAGCTAAATTGGTTGGAAATGTAACCCAAAACCCTAATGATCAAGACCAAACTGGACTAGGTTTCTTCCACAACCTCGCATACAGTCCTCCTGAAGAAATCACAATGACCCAGTTGCCTCGGCCGACCACTGCTACTTCAGCCCTAGGACTCCTGCTTCAGTCATCAAAGTTCAAGGAGATGATGGAGATGACAACGGCCACCGACTCATCCATGACATCGTCATCCCTGCCGGAACTGCCTCAGTGCACTTTTCCCGATGACATACAGACTTACTTCGACTGCCAAGATTCTACGAGCTATGGAGATGGAGACGATGCTATGTTCAGTGAGCTCAACTCATACATCCCGTCCATGTTTCAATGCGATTTCACCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

364

Amino Acids

40.95

Weight (kDa)

7.09

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 56 - 110 3.2e-07 AP2 domain
AP2 PF00847 153 - 204 2.1e-11 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 259
AclI AACGTT 1 cut(s) 711
AclWI GGATC 2 cut(s) 411, 424
AcoI YGGCCR 5 cut(s) 3, 196, 514, 836, 912
AcuI CTGAAG 3 cut(s) 828, 837, 857
AcyI GRCGYC 1 cut(s) 174
AfaI GTAC 1 cut(s) 323
AfeI AGCGCT 1 cut(s) 315
AfiI CCNNNNNNNGG 3 cut(s) 205, 426, 568
AflII CTTAAG 1 cut(s) 317
AgsI TTSAA 3 cut(s) 716, 889, 1076
AjnI CCWGG 2 cut(s) 119, 179
AjuI GAANNNNNNNTTGG 2 cut(s) 495, 527
AleI CACNNNNGTG 1 cut(s) 107
Alw21I GWGCWC 2 cut(s) 965, 1050
Alw26I GTCTC 2 cut(s) 617, 1020
Alw44I GTGCAC 1 cut(s) 961
AlwI GGATC 2 cut(s) 411, 424
Aor51HI AGCGCT 1 cut(s) 315
AoxI GGCC 7 cut(s) 3, 196, 256, 391, 514, 836, 912
ApaLI GTGCAC 1 cut(s) 961
ApeKI GCWGC 8 cut(s) 62, 83, 156, 287, 290, 311, 572, 593
AspA2I CCTAGG 1 cut(s) 859
AspLEI GCGC 1 cut(s) 316
AspS9I GGNCC 1 cut(s) 671
AsuC2I CCSGG 1 cut(s) 518
AsuHPI GGTGA 4 cut(s) 6, 121, 169, 1078
AvaII GGWCC 1 cut(s) 671
AvrII CCTAGG 1 cut(s) 859
BaeGI GKGCMC 1 cut(s) 965
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 416
BanII GRGCYC 1 cut(s) 1050
BauI CACGAG 1 cut(s) 447
Bbv12I GWGCWC 2 cut(s) 965, 1050
BbvI GCAGC 8 cut(s) 49, 95, 168, 274, 302, 323, 559, 605
BccI CCATC 4 cut(s) 183, 492, 892, 1016
BceAI ACGGC 2 cut(s) 627, 927
BciT130I CCWGG 2 cut(s) 121, 181
BclI TGATCA 1 cut(s) 754
BcnI CCSGG 1 cut(s) 518
BcoDI GTCTC 2 cut(s) 617, 1020
BfaI CTAG 5 cut(s) 477, 545, 773, 860, 1093
BfmI CTRYAG 3 cut(s) 96, 288, 597
BfoI RGCGCY 1 cut(s) 317
BfrI CTTAAG 1 cut(s) 317
BisI GCNGC 9 cut(s) 63, 84, 157, 259, 288, 291, 312, 573, 594
BlnI CCTAGG 1 cut(s) 859
BlsI GCNGC 9 cut(s) 64, 85, 158, 260, 289, 292, 313, 574, 595
BmcAI AGTACT 1 cut(s) 323
Bme1390I CCNGG 3 cut(s) 121, 181, 518
Bme18I GGWCC 1 cut(s) 671
BmgT120I GGNCC 1 cut(s) 671
BmiI GGNNCC 1 cut(s) 418
BmrFI CCNGG 3 cut(s) 121, 181, 518
BmrI ACTGGG 2 cut(s) 334, 820
BmsI GCATC 2 cut(s) 193, 1021
BmuI ACTGGG 2 cut(s) 334, 820
BplI GAGNNNNNCTC 2 cut(s) 1037, 1069
BpuEI CTTGAG 1 cut(s) 442
BpuMI CCSGG 1 cut(s) 518
Bsa29I ATCGAT 1 cut(s) 187
BsaHI GRCGYC 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 617
BsaJI CCNNGG 4 cut(s) 134, 262, 833, 859
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 426, 568
Bse1I ACTGG 4 cut(s) 199, 329, 772, 826
BseBI CCWGG 2 cut(s) 121, 181
BseCI ATCGAT 1 cut(s) 187
BseDI CCNNGG 4 cut(s) 134, 262, 833, 859
BseGI GGATG 3 cut(s) 923, 938, 1059
BseLI CCNNNNNNNGG 3 cut(s) 205, 426, 568
BseMII CTCAG 3 cut(s) 32, 652, 971
BseNI ACTGG 4 cut(s) 199, 329, 772, 826
BseSI GKGCMC 1 cut(s) 965
BseX3I CGGCCG 1 cut(s) 836
BseXI GCAGC 8 cut(s) 49, 95, 168, 274, 302, 323, 559, 605
Bsh1285I CGRYCG 1 cut(s) 839
BshFI GGCC 7 cut(s) 5, 198, 258, 393, 516, 838, 914
BshVI ATCGAT 1 cut(s) 187
BsiEI CGRYCG 1 cut(s) 839
BsiHKAI GWGCWC 2 cut(s) 965, 1050
BsiSI CCGG 2 cut(s) 517, 947
BslFI GGGAC 3 cut(s) 152, 233, 562
BslI CCNNNNNNNGG 3 cut(s) 205, 426, 568
BsmAI GTCTC 2 cut(s) 617, 1020
BsmBI CGTCTC 1 cut(s) 1020
BsmFI GGGAC 3 cut(s) 152, 233, 562
BsnI GGCC 7 cut(s) 5, 198, 258, 393, 516, 838, 914
Bso31I GGTCTC 1 cut(s) 617
Bsp1286I GDGCHC 2 cut(s) 965, 1050
Bsp143I GATC 3 cut(s) 416, 634, 754
BspACI CCGC 1 cut(s) 259
BspANI GGCC 7 cut(s) 5, 198, 258, 393, 516, 838, 914
BspCNI CTCAG 3 cut(s) 31, 651, 970
BspDI ATCGAT 1 cut(s) 187
BspLI GGNNCC 1 cut(s) 418
BspMAI CTGCAG 1 cut(s) 292
BspPI GGATC 2 cut(s) 411, 424
BspQI GCTCTTC 1 cut(s) 425
BspTI CTTAAG 1 cut(s) 317
BspTNI GGTCTC 1 cut(s) 617
BsrI ACTGG 4 cut(s) 199, 329, 772, 826
BssECI CCNNGG 4 cut(s) 134, 262, 833, 859
BssMI GATC 3 cut(s) 416, 634, 754
BssNI GRCGYC 1 cut(s) 174
BssSI CACGAG 1 cut(s) 447
BssT1I CCWWGG 2 cut(s) 262, 859
Bst2BI CACGAG 1 cut(s) 447
Bst2UI CCWGG 2 cut(s) 121, 181
Bst4CI ACNGT 3 cut(s) 97, 800, 1090
Bst6I CTCTTC 2 cut(s) 425, 561
BstACI GRCGYC 1 cut(s) 174
BstAFI CTTAAG 1 cut(s) 317
BstAPI GCANNNNNTGC 1 cut(s) 296
BstDEI CTNAG 4 cut(s) 18, 307, 638, 957
BstENI CCTNNNNNAGG 1 cut(s) 424
BstF5I GGATG 3 cut(s) 923, 938, 1059
BstH2I RGCGCY 1 cut(s) 317
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 3 cut(s) 419, 637, 757
BstMAI GTCTC 2 cut(s) 617, 1020
BstMBI GATC 3 cut(s) 416, 634, 754
BstMCI CGRYCG 1 cut(s) 839
BstMWI GCNNNNNNNGC 5 cut(s) 83, 296, 578, 854, 952
BstNI CCWGG 2 cut(s) 121, 181
BstNSI RCATGY 1 cut(s) 299
BstSCI CCNGG 3 cut(s) 119, 179, 516
BstSFI CTRYAG 3 cut(s) 96, 288, 597
BstSLI GKGCMC 1 cut(s) 965
BstV1I GCAGC 8 cut(s) 49, 95, 168, 274, 302, 323, 559, 605
BstX2I RGATCY 1 cut(s) 416
BstYI RGATCY 1 cut(s) 416
BstZI CGGCCG 1 cut(s) 836
Bsu15I ATCGAT 1 cut(s) 187
BsuRI GGCC 7 cut(s) 5, 198, 258, 393, 516, 838, 914
BsuTUI ATCGAT 1 cut(s) 187
BtsCI GGATG 3 cut(s) 923, 938, 1059
BtsI GCAGTG 2 cut(s) 442, 843
BtsIMutI CAGTG 4 cut(s) 442, 843, 965, 1048
CfoI GCGC 1 cut(s) 316
Cfr13I GGNCC 1 cut(s) 671
ClaI ATCGAT 1 cut(s) 187
CseI GACGC 1 cut(s) 163
Csp6I GTAC 1 cut(s) 322
CviAII CATG 4 cut(s) 296, 589, 928, 1069
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 4 cut(s) 18, 307, 638, 957
DpnI GATC 3 cut(s) 418, 636, 756
DpnII GATC 3 cut(s) 416, 634, 754
EaeI YGGCCR 5 cut(s) 3, 196, 514, 836, 912
EagI CGGCCG 1 cut(s) 836
Eam1104I CTCTTC 2 cut(s) 425, 561
EarI CTCTTC 2 cut(s) 425, 561
Ecl136II GAGCTC 1 cut(s) 1048
EclXI CGGCCG 1 cut(s) 836
Eco130I CCWWGG 2 cut(s) 262, 859
Eco24I GRGCYC 1 cut(s) 1050
Eco31I GGTCTC 1 cut(s) 617
Eco47I GGWCC 1 cut(s) 671
Eco47III AGCGCT 1 cut(s) 315
Eco52I CGGCCG 1 cut(s) 836
Eco53kI GAGCTC 1 cut(s) 1048
Eco57I CTGAAG 3 cut(s) 828, 837, 857
EcoICRI GAGCTC 1 cut(s) 1048
EcoNI CCTNNNNNAGG 1 cut(s) 424
EcoRII CCWGG 2 cut(s) 119, 179
EcoT14I CCWWGG 2 cut(s) 262, 859
EcoT38I GRGCYC 1 cut(s) 1050
ErhI CCWWGG 2 cut(s) 262, 859
Esp3I CGTCTC 1 cut(s) 1020
FaeI CATG 4 cut(s) 299, 592, 931, 1072
FaqI GGGAC 3 cut(s) 152, 233, 562
FatI CATG 4 cut(s) 295, 588, 927, 1068
FauNDI CATATG 2 cut(s) 271, 553
FbaI TGATCA 1 cut(s) 754
Fnu4HI GCNGC 9 cut(s) 63, 84, 157, 259, 288, 291, 312, 573, 594
FokI GGATG 3 cut(s) 910, 925, 1046
FriOI GRGCYC 1 cut(s) 1050
Fsp4HI GCNGC 9 cut(s) 63, 84, 157, 259, 288, 291, 312, 573, 594
FspBI CTAG 5 cut(s) 477, 545, 773, 860, 1093
GlaI GCGC 1 cut(s) 315
GluI GCNGC 9 cut(s) 63, 84, 157, 259, 288, 291, 312, 573, 594
HaeII RGCGCY 1 cut(s) 317
HaeIII GGCC 7 cut(s) 5, 198, 258, 393, 516, 838, 914
HapII CCGG 2 cut(s) 517, 947
HgaI GACGC 1 cut(s) 163
HhaI GCGC 1 cut(s) 316
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 4 cut(s) 299, 592, 931, 1072
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HinfI GANTC 5 cut(s) 140, 239, 864, 920, 1004
HpaII CCGG 2 cut(s) 517, 947
HphI GGTGA 4 cut(s) 6, 121, 169, 1078
Hpy166II GTNNAC 1 cut(s) 963
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 5 cut(s) 332, 399, 758, 806, 971
Hpy8I GTNNAC 1 cut(s) 963
HpyAV CCTTC 2 cut(s) 383, 420
HpyCH4III ACNGT 3 cut(s) 97, 800, 1090
HpyCH4IV ACGT 1 cut(s) 711
HpyCH4V TGCA 8 cut(s) 38, 50, 77, 83, 290, 575, 620, 963
HpyF10VI GCNNNNNNNGC 5 cut(s) 83, 296, 578, 854, 952
HpyF3I CTNAG 4 cut(s) 18, 307, 638, 957
HpySE526I ACGT 1 cut(s) 711
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 4 cut(s) 299, 592, 931, 1072
HspAI GCGC 1 cut(s) 314
Ksp22I TGATCA 1 cut(s) 754
Kzo9I GATC 3 cut(s) 416, 634, 754
LguI GCTCTTC 1 cut(s) 425
LmnI GCTCC 2 cut(s) 164, 266
Lsp1109I GCAGC 8 cut(s) 49, 95, 168, 274, 302, 323, 559, 605
LweI GCATC 2 cut(s) 193, 1021
MaeI CTAG 5 cut(s) 477, 545, 773, 860, 1093
MaeII ACGT 1 cut(s) 711
MaeIII GTNAC 5 cut(s) 100, 175, 622, 644, 736
MalI GATC 3 cut(s) 418, 636, 756
MboI GATC 3 cut(s) 416, 634, 754
MboII GAAGA 6 cut(s) 293, 442, 507, 578, 772, 821
MflI RGATCY 1 cut(s) 416
MhlI GDGCHC 2 cut(s) 965, 1050
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 226, 510, 722
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 134, 858, 914
MmeI TCCRAC 1 cut(s) 709
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 69, 318, 345
MslI CAYNNNNRTG 3 cut(s) 107, 300, 489
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 317
MspI CCGG 2 cut(s) 517, 947
MspR9I CCNGG 3 cut(s) 121, 181, 518
MvaI CCWGG 2 cut(s) 121, 181
MwoI GCNNNNNNNGC 5 cut(s) 83, 296, 578, 854, 952
NciI CCSGG 1 cut(s) 518
NdeI CATATG 2 cut(s) 271, 553
NdeII GATC 3 cut(s) 416, 634, 754
NlaIII CATG 4 cut(s) 299, 592, 931, 1072
NlaIV GGNNCC 1 cut(s) 418
NmeAIII GCCGAG 2 cut(s) 159, 814
NmuCI GTSAC 2 cut(s) 100, 175
NspI RCATGY 1 cut(s) 299
OliI CACNNNNGTG 1 cut(s) 107
PciSI GCTCTTC 1 cut(s) 425
PfeI GAWTC 2 cut(s) 239, 1004
PflFI GACNNNGTC 1 cut(s) 934
PkrI GCNGC 9 cut(s) 64, 85, 158, 260, 289, 292, 313, 574, 595
PleI GAGTC 3 cut(s) 134, 858, 914
PpsI GAGTC 3 cut(s) 134, 858, 914
Psp124BI GAGCTC 1 cut(s) 1050
Psp1406I AACGTT 1 cut(s) 711
Psp6I CCWGG 2 cut(s) 119, 179
PspGI CCWGG 2 cut(s) 119, 179
PspN4I GGNNCC 1 cut(s) 418
PspPI GGNCC 1 cut(s) 671
PstI CTGCAG 1 cut(s) 292
PsuI RGATCY 1 cut(s) 416
PsyI GACNNNGTC 1 cut(s) 934
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 3 cut(s) 107, 300, 489
SacI GAGCTC 1 cut(s) 1050
SapI GCTCTTC 1 cut(s) 425
SaqAI TTAA 3 cut(s) 69, 318, 345
SatI GCNGC 9 cut(s) 63, 84, 157, 259, 288, 291, 312, 573, 594
Sau3AI GATC 3 cut(s) 416, 634, 754
Sau96I GGNCC 1 cut(s) 671
ScaI AGTACT 1 cut(s) 323
SchI GAGTC 3 cut(s) 134, 858, 914
ScrFI CCNGG 3 cut(s) 121, 181, 518
SduI GDGCHC 2 cut(s) 965, 1050
SfaNI GCATC 2 cut(s) 193, 1021
SfcI CTRYAG 3 cut(s) 96, 288, 597
SinI GGWCC 1 cut(s) 671
SmiMI CAYNNNNRTG 3 cut(s) 107, 300, 489
SmlI CTYRAG 2 cut(s) 317, 421
SmoI CTYRAG 2 cut(s) 317, 421
Sse9I AATT 3 cut(s) 226, 510, 722
SsiI CCGC 1 cut(s) 259
SspMI CTAG 5 cut(s) 477, 545, 773, 860, 1093
SstI GAGCTC 1 cut(s) 1050
StyD4I CCNGG 3 cut(s) 119, 179, 516
StyI CCWWGG 2 cut(s) 262, 859
TaaI ACNGT 3 cut(s) 97, 800, 1090
TaiI ACGT 1 cut(s) 714
TaqI TCGA 4 cut(s) 169, 187, 508, 993
TasI AATT 3 cut(s) 226, 510, 722
TatI WGTACW 1 cut(s) 321
TauI GCSGC 1 cut(s) 261
TfiI GAWTC 2 cut(s) 239, 1004
Tru1I TTAA 3 cut(s) 69, 318, 345
Tru9I TTAA 3 cut(s) 69, 318, 345
TscAI CASTG 4 cut(s) 442, 850, 965, 1048
TseFI GTSAC 2 cut(s) 100, 175
TseI GCWGC 8 cut(s) 62, 83, 156, 287, 290, 311, 572, 593
Tsp45I GTSAC 2 cut(s) 100, 175
TspDTI ATGAA 3 cut(s) 252, 294, 392
TspGWI ACGGA 1 cut(s) 342
TspRI CASTG 4 cut(s) 442, 850, 965, 1048
Tth111I GACNNNGTC 1 cut(s) 934
Vha464I CTTAAG 1 cut(s) 317
VneI GTGCAC 1 cut(s) 961
VpaK11BI GGWCC 1 cut(s) 671
XagI CCTNNNNNAGG 1 cut(s) 424
XceI RCATGY 1 cut(s) 299
XmaJI CCTAGG 1 cut(s) 859
XspI CTAG 5 cut(s) 477, 545, 773, 860, 1093
ZrmI AGTACT 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.