Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002197

Physical Location & Seq

Genomic Coordinates Reverse (-)

8096443 .. 8099112

Gene Structure 2670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G101600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCCAAGTTATCCAACCAGAAAACCACTGCAAAAAATAACATTATTTCTAACGCTAATGCAGCTAATAACACTACAGTCACAAAGGTGAAACGAACCAGGAGAAGTGTCCCAAGAGACTCCCCTCCTCAACGTAGCTCGATTTATCGAGGGGTCACCAGGCATCGGTGGACCGGCCGATATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCCCAGAACAAGAAGGGCCGCCAAGTTTACCTTGGAGCATATGATGATGAAGAAGCTGCAGCGCATGCTTATGACTTAGCAGCACTTAAATACTGGGGTCAAGATACCATTCTCAACTTTCCGTTATCGACATATCCGAAAGAATTGAAAGAAATGGAGGGCCAGTCAAGAGAGGAATACATTGGATCATTGAGACGGAAGAGCAGTGGTTTTTCTCGGGGAGTTTCTAAATATAGAGGTGTTGCTAGACATCATCACAATGGAAGATGGGAAGCTCGAATTGGACGAGTCTTCGGCAACAAGTATCTCTATCTTGGGACTTATGCTACCCAAGAAGAAGCCGCAACAGCGTATGACATGGCGGCCATAGAGTACCGTGGGCTCAATGCTGTCACAAACTTTGACCTCAGCCGTTACATCAAATGGCTAAAGCCTAATGGCCCTAACAACGACATTTCTGGTCAGACTAAACCTAATGTGGAGGCTATATTGCCCAATGTGACCCAAAACCCTAATGATCAAGAACGTGGACTTGGTTTCTTCAACAACCTTGCATACAGCCCTGGAGAAACCGTAGTGACCACTCAGCTGCCTAGACCAACAACTGCAACATCAGCTCTAGGGCTCCTGCTTCAGTCATCAAAGTTCAAGGAGATGATGGAAATGACGACGGCCACCGACTCCATATCATCGCAGCCGGAGCTGGACACGCCGCAGTGCACGTTTCCCGATGACATACAGACGTACTTCGACTGCCAAGAATCGAGTAGCTACGGTGAGGGAGATGATCTTATCTTCAGTGAGCTCAATTCATTCATGCCACCCATGTTTCAGTGCGACTTCACCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

357

Amino Acids

40.25

Weight (kDa)

8.19

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G79700 AT1G79700 AT1G79700 AT1G79700
fragaria_vesca	FvH4_4g08800 FvH4_6g28200 FvH4_6g28200 FvH4_6g28200
malus_domestica	MD09G1228500.v1.1 MD16G1258700.v1.1 MD17G1226700.v1.1
prunus_persica	Prupe.1G101600_v2.0.a1 Prupe.3G104100_v2.0.a1
pyrus_communis	pycom09g14740 pycom17g23010
rosa_chinensis	RchiOBHm_Chr2g0132251 RchiOBHm_Chr4g0405371
rosa_laevigata	RLG00000008847 RLG00000019240
rosa_multiflora	Rmu_sc0006313.1_g000002 Rmu_sc0011487.1_g000002
rosa_roxburghii	Rroxscaffold_2G00112250 Rroxscaffold_5G00349830
rosa_rugosa	Rorug02G0303000 Rorug02G0303000 Rorug04G0057800
rosa_samantha	Rh2AG356200 Rh2BG362600 Rh2CG339700 Rh2DG379500 Rh4AG131300 Rh4BG125900 Rh4CG138400 Rh4DG125400
rosa_wichuraiana	Rw2G028940 Rw4G010640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	238, 561, 581, 932, 1065
AclWI	GGATC	1 cut(s)	412
AcoI	YGGCCR	4 cut(s)	3, 175, 582, 891
AcuI	CTGAAG	2 cut(s)	836, 1000
AfaI	GTAC	2 cut(s)	593, 965
AfiI	CCNNNNNNNGG	2 cut(s)	165, 184
AgsI	TTSAA	3 cut(s)	367, 763, 868
AjnI	CCWGG	3 cut(s)	98, 158, 781
AjuI	GAANNNNNNNTTGG	4 cut(s)	483, 515, 735, 767
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	9 cut(s)	65, 138, 275, 494, 808, 836, 922, 990, 1024
AluI	AGCT	9 cut(s)	65, 138, 275, 494, 808, 836, 922, 990, 1024
Alw21I	GWGCWC	2 cut(s)	941, 1026
Alw26I	GTCTC	2 cut(s)	111, 406
Alw44I	GTGCAC	1 cut(s)	937
AlwI	GGATC	1 cut(s)	412
Ama87I	CYCGRG	1 cut(s)	435
AoxI	GGCC	7 cut(s)	3, 175, 235, 379, 582, 658, 891
ApaLI	GTGCAC	1 cut(s)	937
ApeKI	GCWGC	6 cut(s)	62, 275, 278, 299, 808, 913
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	4 cut(s)	171, 235, 379, 659
AsuHPI	GGTGA	4 cut(s)	100, 148, 1007, 1054
AvaI	CYCGRG	1 cut(s)	435
AvaII	GGWCC	1 cut(s)	171
BaeGI	GKGCMC	1 cut(s)	941
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	3 cut(s)	603, 846, 1026
BbsI	GAAGAC	1 cut(s)	502
Bbv12I	GWGCWC	2 cut(s)	941, 1026
BbvCI	CCTCAGC	1 cut(s)	626
BbvI	GCAGC	6 cut(s)	74, 262, 290, 311, 795, 925
BccI	CCATC	2 cut(s)	480, 871
BceAI	ACGGC	2 cut(s)	615, 906
BciT130I	CCWGG	3 cut(s)	100, 160, 783
BclI	TGATCA	1 cut(s)	736
BcoDI	GTCTC	2 cut(s)	111, 406
BfaI	CTAG	3 cut(s)	465, 813, 839
BfmI	CTRYAG	2 cut(s)	75, 276
Bme1390I	CCNGG	3 cut(s)	100, 160, 783
Bme18I	GGWCC	1 cut(s)	171
BmeT110I	CYCGRG	1 cut(s)	435
BmgT120I	GGNCC	4 cut(s)	171, 235, 379, 659
BmiI	GGNNCC	1 cut(s)	845
BmrFI	CCNGG	3 cut(s)	100, 160, 783
BmrI	ACTGGG	1 cut(s)	322
BmsI	GCATC	1 cut(s)	172
BmuI	ACTGGG	1 cut(s)	322
BpiI	GAAGAC	1 cut(s)	502
BpmI	CTGGAG	1 cut(s)	804
Bpu10I	CCTNAGC	1 cut(s)	626
BsaJI	CCNNGG	3 cut(s)	250, 595, 781
BsaXI	ACNNNNNCTCC	4 cut(s)	368, 398, 777, 807
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 184
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	2 cut(s)	317, 382
BseBI	CCWGG	3 cut(s)	100, 160, 783
BseDI	CCNNGG	3 cut(s)	250, 595, 781
BseLI	CCNNNNNNNGG	2 cut(s)	165, 184
BseMII	CTCAG	2 cut(s)	640, 818
BseNI	ACTGG	2 cut(s)	317, 382
BseRI	GAGGAG	1 cut(s)	117
BseSI	GKGCMC	1 cut(s)	941
BseX3I	CGGCCG	1 cut(s)	175
BseXI	GCAGC	6 cut(s)	74, 262, 290, 311, 795, 925
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	7 cut(s)	5, 177, 237, 381, 584, 660, 893
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	2 cut(s)	941, 1026
BsiHKCI	CYCGRG	1 cut(s)	435
BsiSI	CCGG	2 cut(s)	174, 917
BslFI	GGGAC	2 cut(s)	95, 550
BslI	CCNNNNNNNGG	2 cut(s)	165, 184
BsmAI	GTCTC	2 cut(s)	111, 406
BsmBI	CGTCTC	1 cut(s)	406
BsmFI	GGGAC	2 cut(s)	95, 550
BsnI	GGCC	7 cut(s)	5, 177, 237, 381, 584, 660, 893
BsoBI	CYCGRG	1 cut(s)	435
Bsp1286I	GDGCHC	4 cut(s)	603, 846, 941, 1026
Bsp143I	GATC	3 cut(s)	404, 736, 1006
BspACI	CCGC	5 cut(s)	238, 561, 581, 932, 1065
BspANI	GGCC	7 cut(s)	5, 177, 237, 381, 584, 660, 893
BspCNI	CTCAG	2 cut(s)	639, 817
BspLI	GGNNCC	1 cut(s)	845
BspMAI	CTGCAG	1 cut(s)	280
BspPI	GGATC	1 cut(s)	412
BspQI	GCTCTTC	1 cut(s)	413
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	317, 382
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	3 cut(s)	250, 595, 781
BssMI	GATC	3 cut(s)	404, 736, 1006
BssT1I	CCWWGG	1 cut(s)	250
Bst2UI	CCWGG	3 cut(s)	100, 160, 783
Bst4CI	ACNGT	4 cut(s)	79, 596, 793, 995
Bst6I	CTCTTC	1 cut(s)	413
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	4 cut(s)	295, 626, 804, 1068
BstDSI	CCRYGG	1 cut(s)	595
BstEII	GGTNACC	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	3 cut(s)	407, 739, 1009
BstMAI	GTCTC	2 cut(s)	111, 406
BstMBI	GATC	3 cut(s)	404, 736, 1006
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 284, 566, 833, 919, 928
BstNI	CCWGG	3 cut(s)	100, 160, 783
BstNSI	RCATGY	1 cut(s)	287
BstPI	GGTNACC	1 cut(s)	154
BstSCI	CCNGG	3 cut(s)	98, 158, 781
BstSFI	CTRYAG	2 cut(s)	75, 276
BstSLI	GKGCMC	1 cut(s)	941
BstV1I	GCAGC	6 cut(s)	74, 262, 290, 311, 795, 925
BstV2I	GAAGAC	1 cut(s)	502
BstZI	CGGCCG	1 cut(s)	175
BsuRI	GGCC	7 cut(s)	5, 177, 237, 381, 584, 660, 893
BtgI	CCRYGG	1 cut(s)	595
BtgZI	GCGATG	1 cut(s)	894
BtsI	GCAGTG	3 cut(s)	27, 430, 941
BtsIMutI	CAGTG	5 cut(s)	27, 430, 941, 1024, 1058
Cac8I	GCNNGC	1 cut(s)	285
CfoI	GCGC	1 cut(s)	283
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	4 cut(s)	171, 235, 379, 659
Csp6I	GTAC	2 cut(s)	592, 964
CviAII	CATG	4 cut(s)	284, 577, 1036, 1045
CviQI	GTAC	2 cut(s)	592, 964
DdeI	CTNAG	4 cut(s)	295, 626, 804, 1068
DpnI	GATC	3 cut(s)	406, 738, 1008
DpnII	GATC	3 cut(s)	404, 736, 1006
EaeI	YGGCCR	4 cut(s)	3, 175, 582, 891
EagI	CGGCCG	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
Ecl136II	GAGCTC	1 cut(s)	1024
EclXI	CGGCCG	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	250
Eco24I	GRGCYC	3 cut(s)	603, 846, 1026
Eco47I	GGWCC	1 cut(s)	171
Eco52I	CGGCCG	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	1024
Eco57I	CTGAAG	2 cut(s)	836, 1000
Eco88I	CYCGRG	1 cut(s)	435
Eco91I	GGTNACC	1 cut(s)	154
EcoICRI	GAGCTC	1 cut(s)	1024
EcoO65I	GGTNACC	1 cut(s)	154
EcoRII	CCWGG	3 cut(s)	98, 158, 781
EcoT14I	CCWWGG	1 cut(s)	250
EcoT38I	GRGCYC	3 cut(s)	603, 846, 1026
ErhI	CCWWGG	1 cut(s)	250
Esp3I	CGTCTC	1 cut(s)	406
FaeI	CATG	4 cut(s)	287, 580, 1039, 1048
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FaqI	GGGAC	2 cut(s)	95, 550
FatI	CATG	4 cut(s)	283, 576, 1035, 1044
FauNDI	CATATG	1 cut(s)	259
FbaI	TGATCA	1 cut(s)	736
FriOI	GRGCYC	3 cut(s)	603, 846, 1026
FspBI	CTAG	3 cut(s)	465, 813, 839
GlaI	GCGC	1 cut(s)	282
GsuI	CTGGAG	1 cut(s)	804
HaeIII	GGCC	7 cut(s)	5, 177, 237, 381, 584, 660, 893
HapII	CCGG	2 cut(s)	174, 917
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	4 cut(s)	287, 580, 1039, 1048
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HinfI	GANTC	5 cut(s)	119, 218, 507, 899, 980
HpaII	CCGG	2 cut(s)	174, 917
HphI	GGTGA	4 cut(s)	100, 148, 1007, 1054
Hpy166II	GTNNAC	4 cut(s)	171, 247, 749, 939
Hpy188I	TCNGA	2 cut(s)	357, 684
Hpy188III	TCNNGA	4 cut(s)	320, 387, 740, 947
Hpy8I	GTNNAC	4 cut(s)	171, 247, 749, 939
Hpy99I	CGWCG	1 cut(s)	892
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	4 cut(s)	79, 596, 793, 995
HpyCH4IV	ACGT	4 cut(s)	133, 745, 941, 962
HpyCH4V	TGCA	6 cut(s)	32, 62, 278, 773, 827, 939
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 284, 566, 833, 919, 928
HpyF3I	CTNAG	4 cut(s)	295, 626, 804, 1068
HpySE526I	ACGT	4 cut(s)	133, 745, 941, 962
Hsp92II	CATG	4 cut(s)	287, 580, 1039, 1048
HspAI	GCGC	1 cut(s)	281
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	3 cut(s)	404, 736, 1006
LguI	GCTCTTC	1 cut(s)	413
LmnI	GCTCC	3 cut(s)	254, 849, 919
Lsp1109I	GCAGC	6 cut(s)	74, 262, 290, 311, 795, 925
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	3 cut(s)	465, 813, 839
MaeII	ACGT	4 cut(s)	133, 745, 941, 962
MaeIII	GTNAC	6 cut(s)	79, 154, 610, 632, 718, 796
MalI	GATC	3 cut(s)	406, 738, 1008
MboI	GATC	3 cut(s)	404, 736, 1006
MboII	GAAGA	7 cut(s)	281, 430, 495, 502, 566, 751, 1006
MhlI	GDGCHC	4 cut(s)	603, 846, 941, 1026
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	205, 362, 498, 1027
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	113, 516, 893
MmeI	TCCRAC	1 cut(s)	39
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	3 cut(s)	86, 288, 477
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	808
MspI	CCGG	2 cut(s)	174, 917
MspR9I	CCNGG	3 cut(s)	100, 160, 783
MvaI	CCWGG	3 cut(s)	100, 160, 783
MwoI	GCNNNNNNNGC	6 cut(s)	62, 284, 566, 833, 919, 928
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	3 cut(s)	404, 736, 1006
NlaIII	CATG	4 cut(s)	287, 580, 1039, 1048
NlaIV	GGNNCC	1 cut(s)	845
NmuCI	GTSAC	5 cut(s)	79, 154, 610, 718, 796
NspI	RCATGY	1 cut(s)	287
OliI	CACNNNNGTG	1 cut(s)	86
PaeI	GCATGC	1 cut(s)	287
PciSI	GCTCTTC	1 cut(s)	413
PcsI	WCGNNNNNNNCGW	2 cut(s)	353, 502
PfeI	GAWTC	2 cut(s)	218, 980
PleI	GAGTC	3 cut(s)	113, 515, 893
PpsI	GAGTC	3 cut(s)	113, 515, 893
Psp124BI	GAGCTC	1 cut(s)	1026
Psp6I	CCWGG	3 cut(s)	98, 158, 781
PspEI	GGTNACC	1 cut(s)	154
PspGI	CCWGG	3 cut(s)	98, 158, 781
PspN4I	GGNNCC	1 cut(s)	845
PspPI	GGNCC	4 cut(s)	171, 235, 379, 659
PstI	CTGCAG	1 cut(s)	280
PvuII	CAGCTG	1 cut(s)	808
RsaI	GTAC	2 cut(s)	593, 965
RsaNI	GTAC	2 cut(s)	592, 964
RseI	CAYNNNNRTG	3 cut(s)	86, 288, 477
SacI	GAGCTC	1 cut(s)	1026
SapI	GCTCTTC	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	306
Sau3AI	GATC	3 cut(s)	404, 736, 1006
Sau96I	GGNCC	4 cut(s)	171, 235, 379, 659
SchI	GAGTC	3 cut(s)	113, 516, 893
ScrFI	CCNGG	3 cut(s)	100, 160, 783
SduI	GDGCHC	4 cut(s)	603, 846, 941, 1026
SfaNI	GCATC	1 cut(s)	172
SfcI	CTRYAG	2 cut(s)	75, 276
SinI	GGWCC	1 cut(s)	171
SmiMI	CAYNNNNRTG	3 cut(s)	86, 288, 477
SphI	GCATGC	1 cut(s)	287
Sse9I	AATT	4 cut(s)	205, 362, 498, 1027
SsiI	CCGC	5 cut(s)	238, 561, 581, 932, 1065
SspMI	CTAG	3 cut(s)	465, 813, 839
SstI	GAGCTC	1 cut(s)	1026
StyD4I	CCNGG	3 cut(s)	98, 158, 781
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	4 cut(s)	79, 596, 793, 995
TaiI	ACGT	4 cut(s)	136, 748, 944, 965
TaqI	TCGA	6 cut(s)	140, 148, 347, 496, 969, 983
TasI	AATT	4 cut(s)	205, 362, 498, 1027
TauI	GCSGC	4 cut(s)	240, 563, 584, 934
TfiI	GAWTC	2 cut(s)	218, 980
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	5 cut(s)	34, 430, 941, 1024, 1058
TseFI	GTSAC	5 cut(s)	79, 154, 610, 718, 796
TseI	GCWGC	6 cut(s)	62, 275, 278, 299, 808, 913
Tsp45I	GTSAC	5 cut(s)	79, 154, 610, 718, 796
TspDTI	ATGAA	4 cut(s)	231, 282, 1020, 1024
TspGWI	ACGGA	2 cut(s)	330, 430
TspRI	CASTG	5 cut(s)	34, 430, 941, 1024, 1058
VneI	GTGCAC	1 cut(s)	937
VpaK11BI	GGWCC	1 cut(s)	171
XceI	RCATGY	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	248
XspI	CTAG	3 cut(s)	465, 813, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.