Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002197

Physical Location & Seq

Genomic Coordinates Reverse (-)

50248015 .. 50251189

Gene Structure 3175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG362600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGCACAAGATGATTAAGTTGCCACAAAAGTTTGATGGATGTCACAATCTATGCATGTATATATGGTTGTGTCGTACCACTTGCATTTGTAGAGGTAAGTACATAATGGGGTCTTATAATTTCTGTGATTCGATTCAAACGTGCAGACACCACCATAATGGAAGATGGGAGGCTCGAATCGGAAGAGTATTTGGAAACAAATATCTCTACCTTGGAACCTATGCGACGCAAGAAGAAGCAGCTACAGCTTACGACATGGCAGCAATAGAGTATCGTGGACTTAATGCCGTAACGAACTTCGATCTTAGCCGTTACATCAAGTCACTGTGCCCCAATAATGAGAACATTCCCAACAACACGCAACCAAACCCTAATGCTGACCTCAGTTCGATTCAAAACCCTGATTCTAAGGTAGAGTTAGGGTTTATGCCCCACAACCCGAGTCCGAGCACTAGCGAGTCAATGGTAGCAGTGCCACGGCCGGGGAATGGTTCGTCGGCATCATCTGCACTAGGGCTTTTATTGCAGTCCCCTAAGTTCAAGGAAATGCTCGAGAGGACGTCAGTGGTAGACTGCTCGTCAACGACGACTTTGGAGCCAAACATGCCGCGCCGGAGTTTCCCCGATGACATTCAAACGTACTTTGATTGTCAAGATTTGAATAGCTATGCAGAAGGAGACGACATTATTTTCGGGGAGTTAAACTCATTTGCTTCACCTGTTTTTCATTGTGAACTTGACGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010033 GO:0010035 GO:0010187 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0040008 GO:0042221 GO:0042304 GO:0045723 GO:0045834 GO:0045923 GO:0046889 GO:0046890 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1900140 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

248

Amino Acids

27.84

Weight (kDa)

5.62

Isoelectric Point (pI)

56.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	49 - 93	2.1e-08	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G79700 AT1G79700 AT1G79700 AT1G79700
fragaria_vesca	FvH4_4g08800 FvH4_6g28200 FvH4_6g28200 FvH4_6g28200
malus_domestica	MD09G1228500.v1.1 MD16G1258700.v1.1 MD17G1226700.v1.1
prunus_persica	Prupe.1G101600_v2.0.a1 Prupe.3G104100_v2.0.a1
pyrus_communis	pycom09g14740 pycom17g23010
rosa_chinensis	RchiOBHm_Chr2g0132251 RchiOBHm_Chr4g0405371
rosa_laevigata	RLG00000008847 RLG00000019240
rosa_multiflora	Rmu_sc0006313.1_g000002 Rmu_sc0011487.1_g000002
rosa_roxburghii	Rroxscaffold_2G00112250 Rroxscaffold_5G00349830
rosa_rugosa	Rorug02G0303000 Rorug02G0303000 Rorug04G0057800
rosa_samantha	Rh2AG356200 Rh2BG362600 Rh2CG339700 Rh2DG379500 Rh4AG131300 Rh4BG125900 Rh4CG138400 Rh4DG125400
rosa_wichuraiana	Rw2G028940 Rw4G010640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	117
AatII	GACGTC	1 cut(s)	563
AccI	GTMKAC	1 cut(s)	570
AccII	CGCG	1 cut(s)	610
AciI	CCGC	1 cut(s)	608
AcoI	YGGCCR	1 cut(s)	479
AcyI	GRCGYC	2 cut(s)	560, 741
AfaI	GTAC	3 cut(s)	76, 101, 641
AfiI	CCNNNNNNNGG	2 cut(s)	482, 488
AgsI	TTSAA	5 cut(s)	137, 395, 541, 635, 661
AhdI	GACNNNNNGTC	1 cut(s)	577
AluBI	AGCT	3 cut(s)	242, 248, 666
AluI	AGCT	3 cut(s)	242, 248, 666
Alw21I	GWGCWC	1 cut(s)	452
Alw26I	GTCTC	1 cut(s)	672
Ama87I	CYCGRG	2 cut(s)	439, 551
AoxI	GGCC	1 cut(s)	479
ApeKI	GCWGC	2 cut(s)	239, 260
ArsI	GACNNNNNNTTYG	2 cut(s)	674, 706
AspLEI	GCGC	1 cut(s)	612
AsuC2I	CCSGG	1 cut(s)	483
AsuHPI	GGTGA	1 cut(s)	708
AvaI	CYCGRG	2 cut(s)	439, 551
BaeGI	GKGCMC	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	452
BbvI	GCAGC	2 cut(s)	251, 272
BccI	CCATC	2 cut(s)	29, 159
BceAI	ACGGC	3 cut(s)	272, 294, 494
BcnI	CCSGG	1 cut(s)	483
BcoDI	GTCTC	1 cut(s)	672
BfaI	CTAG	2 cut(s)	453, 512
BfmI	CTRYAG	1 cut(s)	243
BisI	GCNGC	3 cut(s)	240, 261, 608
BlsI	GCNGC	3 cut(s)	241, 262, 609
Bme1390I	CCNGG	1 cut(s)	483
BmeRI	GACNNNNNGTC	1 cut(s)	577
BmeT110I	CYCGRG	2 cut(s)	439, 551
BmiI	GGNNCC	2 cut(s)	217, 597
BmrFI	CCNGG	1 cut(s)	483
BmsI	GCATC	1 cut(s)	509
BplI	GAGNNNNNCTC	2 cut(s)	689, 721
BpuMI	CCSGG	1 cut(s)	483
BsaHI	GRCGYC	2 cut(s)	560, 741
BsaJI	CCNNGG	3 cut(s)	211, 476, 482
Bsc4I	CCNNNNNNNGG	2 cut(s)	482, 488
BseDI	CCNNGG	3 cut(s)	211, 476, 482
BseGI	GGATG	1 cut(s)	44
BseLI	CCNNNNNNNGG	2 cut(s)	482, 488
BseMII	CTCAG	1 cut(s)	397
BseSI	GKGCMC	1 cut(s)	332
BseX3I	CGGCCG	1 cut(s)	479
BseXI	GCAGC	2 cut(s)	251, 272
BsgI	GTGCAG	2 cut(s)	163, 492
Bsh1236I	CGCG	1 cut(s)	610
Bsh1285I	CGRYCG	1 cut(s)	482
BshFI	GGCC	1 cut(s)	481
BsiEI	CGRYCG	1 cut(s)	482
BsiHKAI	GWGCWC	1 cut(s)	452
BsiHKCI	CYCGRG	2 cut(s)	439, 551
BsiSI	CCGG	2 cut(s)	482, 613
BslFI	GGGAC	1 cut(s)	514
BslI	CCNNNNNNNGG	2 cut(s)	482, 488
BsmAI	GTCTC	1 cut(s)	672
BsmBI	CGTCTC	1 cut(s)	672
BsmFI	GGGAC	1 cut(s)	514
BsnI	GGCC	1 cut(s)	481
BsoBI	CYCGRG	2 cut(s)	439, 551
Bsp1286I	GDGCHC	2 cut(s)	332, 452
Bsp143I	GATC	1 cut(s)	301
BspACI	CCGC	1 cut(s)	608
BspANI	GGCC	1 cut(s)	481
BspCNI	CTCAG	1 cut(s)	396
BspFNI	CGCG	1 cut(s)	610
BspLI	GGNNCC	2 cut(s)	217, 597
BssECI	CCNNGG	3 cut(s)	211, 476, 482
BssMI	GATC	1 cut(s)	301
BssNI	GRCGYC	2 cut(s)	560, 741
BssT1I	CCWWGG	1 cut(s)	211
Bst4CI	ACNGT	1 cut(s)	327
Bst6I	CTCTTC	1 cut(s)	178
BstACI	GRCGYC	2 cut(s)	560, 741
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstDEI	CTNAG	4 cut(s)	305, 383, 408, 534
BstDSI	CCRYGG	1 cut(s)	476
BstF5I	GGATG	1 cut(s)	44
BstFNI	CGCG	1 cut(s)	610
BstHHI	GCGC	1 cut(s)	612
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	1 cut(s)	672
BstMBI	GATC	1 cut(s)	301
BstMCI	CGRYCG	1 cut(s)	482
BstMWI	GCNNNNNNNGC	4 cut(s)	245, 506, 523, 604
BstNSI	RCATGY	2 cut(s)	58, 607
BstSCI	CCNGG	1 cut(s)	481
BstSFI	CTRYAG	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	332
BstUI	CGCG	1 cut(s)	610
BstV1I	GCAGC	2 cut(s)	251, 272
BstXI	CCANNNNNNTGG	1 cut(s)	158
BstZI	CGGCCG	1 cut(s)	479
BsuRI	GGCC	1 cut(s)	481
BtgI	CCRYGG	1 cut(s)	476
BtsCI	GGATG	1 cut(s)	44
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	3 cut(s)	323, 477, 570
CfoI	GCGC	1 cut(s)	612
CseI	GACGC	1 cut(s)	235
Csp6I	GTAC	3 cut(s)	75, 100, 640
CviAII	CATG	3 cut(s)	55, 256, 604
CviJI	RGCY	8 cut(s)	173, 242, 248, 309, 481, 517, 598, 666
CviKI_1	RGCY	8 cut(s)	173, 242, 248, 309, 481, 517, 598, 666
CviQI	GTAC	3 cut(s)	75, 100, 640
DdeI	CTNAG	4 cut(s)	305, 383, 408, 534
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
DriI	GACNNNNNGTC	1 cut(s)	577
EaeI	YGGCCR	1 cut(s)	479
EagI	CGGCCG	1 cut(s)	479
Eam1104I	CTCTTC	1 cut(s)	178
Eam1105I	GACNNNNNGTC	1 cut(s)	577
EarI	CTCTTC	1 cut(s)	178
EclXI	CGGCCG	1 cut(s)	479
Eco130I	CCWWGG	1 cut(s)	211
Eco52I	CGGCCG	1 cut(s)	479
Eco88I	CYCGRG	2 cut(s)	439, 551
EcoT14I	CCWWGG	1 cut(s)	211
EcoT22I	ATGCAT	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	211
Esp3I	CGTCTC	1 cut(s)	672
FaeI	CATG	3 cut(s)	58, 259, 607
FaqI	GGGAC	1 cut(s)	514
FatI	CATG	3 cut(s)	54, 255, 603
FblI	GTMKAC	1 cut(s)	570
Fnu4HI	GCNGC	3 cut(s)	240, 261, 608
FokI	GGATG	1 cut(s)	51
Fsp4HI	GCNGC	3 cut(s)	240, 261, 608
FspBI	CTAG	2 cut(s)	453, 512
GlaI	GCGC	1 cut(s)	611
GluI	GCNGC	3 cut(s)	240, 261, 608
HaeIII	GGCC	1 cut(s)	481
HapII	CCGG	2 cut(s)	482, 613
HgaI	GACGC	1 cut(s)	235
HhaI	GCGC	1 cut(s)	612
Hin1I	GRCGYC	2 cut(s)	560, 741
Hin1II	CATG	3 cut(s)	58, 259, 607
Hin6I	GCGC	1 cut(s)	610
HinP1I	GCGC	1 cut(s)	610
HincII	GTYRAC	1 cut(s)	582
HindII	GTYRAC	1 cut(s)	582
HinfI	GANTC	7 cut(s)	128, 133, 177, 391, 404, 442, 458
HpaII	CCGG	2 cut(s)	482, 613
HphI	GGTGA	1 cut(s)	708
Hpy166II	GTNNAC	4 cut(s)	278, 571, 582, 734
Hpy188I	TCNGA	2 cut(s)	182, 447
Hpy188III	TCNNGA	2 cut(s)	553, 653
Hpy8I	GTNNAC	4 cut(s)	278, 571, 582, 734
Hpy99I	CGWCG	3 cut(s)	229, 499, 589
HpyAV	CCTTC	1 cut(s)	668
HpyCH4III	ACNGT	1 cut(s)	327
HpyCH4IV	ACGT	3 cut(s)	140, 560, 638
HpyCH4V	TGCA	7 cut(s)	4, 54, 84, 144, 509, 526, 671
HpyF10VI	GCNNNNNNNGC	4 cut(s)	245, 506, 523, 604
HpyF3I	CTNAG	4 cut(s)	305, 383, 408, 534
HpySE526I	ACGT	3 cut(s)	140, 560, 638
Hsp92I	GRCGYC	2 cut(s)	560, 741
Hsp92II	CATG	3 cut(s)	58, 259, 607
HspAI	GCGC	1 cut(s)	610
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	1 cut(s)	595
LpnPI	CCDG	4 cut(s)	414, 495, 626, 732
Lsp1109I	GCAGC	2 cut(s)	251, 272
LweI	GCATC	1 cut(s)	509
MaeI	CTAG	2 cut(s)	453, 512
MaeII	ACGT	3 cut(s)	140, 560, 638
MaeIII	GTNAC	4 cut(s)	41, 289, 311, 321
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	3 cut(s)	174, 195, 245
MhlI	GDGCHC	2 cut(s)	332, 452
MluCI	AATT	1 cut(s)	118
MlyI	GAGTC	2 cut(s)	451, 467
MnlI	CCTC	4 cut(s)	86, 163, 392, 549
Mph1103I	ATGCAT	1 cut(s)	56
MseI	TTAA	3 cut(s)	15, 282, 701
MslI	CAYNNNNRTG	1 cut(s)	156
MspI	CCGG	2 cut(s)	482, 613
MspR9I	CCNGG	1 cut(s)	483
MvnI	CGCG	1 cut(s)	610
MwoI	GCNNNNNNNGC	4 cut(s)	245, 506, 523, 604
NciI	CCSGG	1 cut(s)	483
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	3 cut(s)	58, 259, 607
NlaIV	GGNNCC	2 cut(s)	217, 597
NmuCI	GTSAC	2 cut(s)	41, 321
NsiI	ATGCAT	1 cut(s)	56
NspI	RCATGY	2 cut(s)	58, 607
PaeR7I	CTCGAG	1 cut(s)	551
PcsI	WCGNNNNNNNCGW	2 cut(s)	137, 584
PfeI	GAWTC	5 cut(s)	128, 133, 177, 391, 404
PkrI	GCNGC	3 cut(s)	241, 262, 609
PleI	GAGTC	2 cut(s)	450, 466
PpsI	GAGTC	2 cut(s)	450, 466
PsiI	TTATAA	1 cut(s)	117
PspN4I	GGNNCC	2 cut(s)	217, 597
RsaI	GTAC	3 cut(s)	76, 101, 641
RsaNI	GTAC	3 cut(s)	75, 100, 640
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	3 cut(s)	15, 282, 701
SatI	GCNGC	3 cut(s)	240, 261, 608
Sau3AI	GATC	1 cut(s)	301
SchI	GAGTC	2 cut(s)	451, 467
ScrFI	CCNGG	1 cut(s)	483
SduI	GDGCHC	2 cut(s)	332, 452
SfaNI	GCATC	1 cut(s)	509
SfcI	CTRYAG	1 cut(s)	243
Sfr274I	CTCGAG	1 cut(s)	551
SlaI	CTCGAG	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
Sse9I	AATT	1 cut(s)	118
SsiI	CCGC	1 cut(s)	608
SspMI	CTAG	2 cut(s)	453, 512
StyD4I	CCNGG	1 cut(s)	481
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	327
TaiI	ACGT	3 cut(s)	143, 563, 641
TaqI	TCGA	5 cut(s)	131, 175, 300, 389, 552
TasI	AATT	1 cut(s)	118
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	1 cut(s)	610
TfiI	GAWTC	5 cut(s)	128, 133, 177, 391, 404
Tru1I	TTAA	3 cut(s)	15, 282, 701
Tru9I	TTAA	3 cut(s)	15, 282, 701
TscAI	CASTG	3 cut(s)	330, 477, 570
TseFI	GTSAC	2 cut(s)	41, 321
TseI	GCWGC	2 cut(s)	239, 260
Tsp45I	GTSAC	2 cut(s)	41, 321
TspDTI	ATGAA	1 cut(s)	716
TspRI	CASTG	3 cut(s)	330, 477, 570
XceI	RCATGY	2 cut(s)	58, 607
XhoI	CTCGAG	1 cut(s)	551
XmiI	GTMKAC	1 cut(s)	570
XspI	CTAG	2 cut(s)	453, 512
ZraI	GACGTC	1 cut(s)	561
Zsp2I	ATGCAT	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.