Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002197

Physical Location & Seq

Genomic Coordinates Reverse (-)

46478279 .. 46480748

Gene Structure 2470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G028940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGCGAAAACCTCACAGAAGATCCAAAAGAATACAACTCCAAGCTCTAGCAATAATAGCAACACCACCACTAGTACTACTACTAGTAGTCCTCCGGCCACCAAGGTCAAGCGGACGCGTAAAAGTGTACGCCGCGACTCTCCGCCTCAGCGGAGCTCCATCTACAGAGGAGTCACAAGGCATCGATGGACGGGTCGGTATGAAGCTCATTTGTGGGATAAGAACTGTTGGAATGAGTCACAGAACAAGAAAGGCAGACAAGTCTATTTAGGGGCATATGATGATGAAGAAGCTGCTGCACGTGCCTATGACTTGGCAGCATTAAAGTACTGGGGACAAGATACAATCCTCAATTTGCCAGTTTCCACCTATGAGGAAGAGCTCAAAGAAATGGACGGTCAGTCTAAAGAAGAATACATTGGATCATTGAGGAGGAAGAGTAGTGGATTTTCTCGTGGTGTTTCAAAATATAGAGGTGTAGCAAGACACCACCATAATGGAAGATGGGAGGCTCGAATTGGAAGAGTATTTGGAAACAAATATCTCTACCTTGGAACCTATGCGACGCAAGAAGAAGCAGCTACAGCTTACGACATGGCAGCAATAGAGTATCGTGGACTTAATGCCGTAACGAACTTCGATCTTAGCCGTTACATCAAGTCACTGTGCCCCAATAATGAGAACGTTCCCAACAACACGCAACCAAACCCTAATGCTGACCTCAGTTCGATTCAAAACCCTGATTCTAAGGTAGGGTTAGGGTTTATGCCCCACAACCCGAGTCCGAGCACTAGCGAGTCAATGGTAGCAGTGCCACGGCAGGGGAATGGTTCGTCGGCGTCATCTGCACTAGGGCTTTTATTGCAGTCCCCTAAGTTCAAGGAAATGCTCGAGAGGACGTCAGTGGTAGACTGTTCGTCAACGACGACTTTGGAGCCAAACATGCCGCGCCGGAGTTTCCCCGATGACATTCAAACGTACTTTGATTGTCAAGATTTGAATAGCTATGCAGAAGGAGACGACATTATTTTCGGGGAGTTAAACTCATTTGCTTCACCTGTTTTTCATTGTGAACTTGATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010033 GO:0010035 GO:0010187 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0040008 GO:0042221 GO:0042304 GO:0045723 GO:0045834 GO:0045923 GO:0046889 GO:0046890 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1900140 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

361

Amino Acids

40.39

Weight (kDa)

8.44

Isoelectric Point (pI)

56.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	55 - 112	2.1e-11	AP2 domain
AP2	PF00847	155 - 206	2.1e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G79700 AT1G79700 AT1G79700 AT1G79700
fragaria_vesca	FvH4_4g08800 FvH4_6g28200 FvH4_6g28200 FvH4_6g28200
malus_domestica	MD09G1228500.v1.1 MD16G1258700.v1.1 MD17G1226700.v1.1
prunus_persica	Prupe.1G101600_v2.0.a1 Prupe.3G104100_v2.0.a1
pyrus_communis	pycom09g14740 pycom17g23010
rosa_chinensis	RchiOBHm_Chr2g0132251 RchiOBHm_Chr4g0405371
rosa_laevigata	RLG00000008847 RLG00000019240
rosa_multiflora	Rmu_sc0006313.1_g000002 Rmu_sc0011487.1_g000002
rosa_roxburghii	Rroxscaffold_2G00112250 Rroxscaffold_5G00349830
rosa_rugosa	Rorug02G0303000 Rorug02G0303000 Rorug04G0057800
rosa_samantha	Rh2AG356200 Rh2BG362600 Rh2CG339700 Rh2DG379500 Rh4AG131300 Rh4BG125900 Rh4CG138400 Rh4DG125400
rosa_wichuraiana	Rw2G028940 Rw4G010640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	902
AccI	GTMKAC	1 cut(s)	909
AccII	CGCG	3 cut(s)	118, 135, 949
AciI	CCGC	5 cut(s)	112, 133, 143, 151, 947
AclI	AACGTT	1 cut(s)	684
AclWI	GGATC	2 cut(s)	16, 430
AcoI	YGGCCR	1 cut(s)	96
AcvI	CACGTG	1 cut(s)	302
AcyI	GRCGYC	2 cut(s)	839, 899
AfaI	GTAC	4 cut(s)	76, 129, 329, 980
AfiI	CCNNNNNNNGG	1 cut(s)	821
AflIII	ACRYGT	1 cut(s)	116
AgsI	TTSAA	5 cut(s)	465, 734, 880, 974, 1000
AhdI	GACNNNNNGTC	2 cut(s)	400, 916
AhlI	ACTAGT	2 cut(s)	71, 83
AjuI	GAANNNNNNNTTGG	2 cut(s)	402, 434
AluBI	AGCT	8 cut(s)	45, 156, 206, 293, 382, 581, 587, 1005
AluI	AGCT	8 cut(s)	45, 156, 206, 293, 382, 581, 587, 1005
Alw21I	GWGCWC	3 cut(s)	158, 384, 791
Alw26I	GTCTC	1 cut(s)	1011
AlwI	GGATC	2 cut(s)	16, 430
Ama87I	CYCGRG	2 cut(s)	778, 890
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	5 cut(s)	293, 296, 317, 578, 599
ArsI	GACNNNNNNTTYG	2 cut(s)	1013, 1045
AspLEI	GCGC	1 cut(s)	951
AsuHPI	GGTGA	1 cut(s)	1047
AvaI	CYCGRG	2 cut(s)	778, 890
BaeGI	GKGCMC	1 cut(s)	671
BanII	GRGCYC	2 cut(s)	158, 384
BauI	CACGAG	1 cut(s)	453
BbrPI	CACGTG	1 cut(s)	302
Bbv12I	GWGCWC	3 cut(s)	158, 384, 791
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	5 cut(s)	280, 283, 329, 590, 611
BccI	CCATC	3 cut(s)	167, 180, 498
BceAI	ACGGC	3 cut(s)	611, 633, 833
BcoDI	GTCTC	1 cut(s)	1011
BcuI	ACTAGT	2 cut(s)	71, 83
BfaI	CTAG	5 cut(s)	48, 72, 84, 792, 851
BfmI	CTRYAG	2 cut(s)	163, 582
BisI	GCNGC	7 cut(s)	133, 294, 297, 318, 579, 600, 947
BlsI	GCNGC	7 cut(s)	134, 295, 298, 319, 580, 601, 948
BmcAI	AGTACT	2 cut(s)	76, 329
BmeRI	GACNNNNNGTC	2 cut(s)	400, 916
BmeT110I	CYCGRG	2 cut(s)	778, 890
BmiI	GGNNCC	2 cut(s)	556, 936
BmrI	ACTGGG	1 cut(s)	340
BmsI	GCATC	2 cut(s)	190, 1069
BmuI	ACTGGG	1 cut(s)	340
BplI	GAGNNNNNCTC	2 cut(s)	1028, 1060
Bpu10I	CCTNAGC	1 cut(s)	147
Bsa29I	ATCGAT	1 cut(s)	184
BsaAI	YACGTR	1 cut(s)	302
BsaHI	GRCGYC	2 cut(s)	839, 899
BsaJI	CCNNGG	3 cut(s)	102, 550, 815
BsaXI	ACNNNNNCTCC	2 cut(s)	424, 454
Bsc4I	CCNNNNNNNGG	1 cut(s)	821
Bse1I	ACTGG	2 cut(s)	335, 359
BseCI	ATCGAT	1 cut(s)	184
BseDI	CCNNGG	3 cut(s)	102, 550, 815
BseLI	CCNNNNNNNGG	1 cut(s)	821
BseMII	CTCAG	2 cut(s)	161, 736
BseNI	ACTGG	2 cut(s)	335, 359
BseRI	GAGGAG	2 cut(s)	183, 445
BseSI	GKGCMC	1 cut(s)	671
BseXI	GCAGC	5 cut(s)	280, 283, 329, 590, 611
BsgI	GTGCAG	2 cut(s)	282, 831
Bsh1236I	CGCG	3 cut(s)	118, 135, 949
BshFI	GGCC	1 cut(s)	98
BshVI	ATCGAT	1 cut(s)	184
BsiHKAI	GWGCWC	3 cut(s)	158, 384, 791
BsiHKCI	CYCGRG	2 cut(s)	778, 890
BsiSI	CCGG	2 cut(s)	95, 952
BslFI	GGGAC	2 cut(s)	348, 853
BslI	CCNNNNNNNGG	1 cut(s)	821
BsmAI	GTCTC	1 cut(s)	1011
BsmBI	CGTCTC	1 cut(s)	1011
BsmFI	GGGAC	2 cut(s)	348, 853
BsnI	GGCC	1 cut(s)	98
BsoBI	CYCGRG	2 cut(s)	778, 890
Bsp1286I	GDGCHC	4 cut(s)	158, 384, 671, 791
Bsp143I	GATC	3 cut(s)	21, 422, 640
BspACI	CCGC	5 cut(s)	112, 133, 143, 151, 947
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	2 cut(s)	160, 735
BspDI	ATCGAT	1 cut(s)	184
BspFNI	CGCG	3 cut(s)	118, 135, 949
BspLI	GGNNCC	2 cut(s)	556, 936
BspPI	GGATC	2 cut(s)	16, 430
BspQI	GCTCTTC	1 cut(s)	372
BsrI	ACTGG	2 cut(s)	335, 359
BssECI	CCNNGG	3 cut(s)	102, 550, 815
BssMI	GATC	3 cut(s)	21, 422, 640
BssNI	GRCGYC	2 cut(s)	839, 899
BssSI	CACGAG	1 cut(s)	453
BssT1I	CCWWGG	2 cut(s)	102, 550
Bst2BI	CACGAG	1 cut(s)	453
Bst4CI	ACNGT	4 cut(s)	227, 398, 666, 914
Bst6I	CTCTTC	3 cut(s)	372, 431, 517
BstACI	GRCGYC	2 cut(s)	839, 899
BstBAI	YACGTR	1 cut(s)	302
BstDEI	CTNAG	5 cut(s)	147, 644, 722, 747, 873
BstDSI	CCRYGG	1 cut(s)	815
BstFNI	CGCG	3 cut(s)	118, 135, 949
BstHHI	GCGC	1 cut(s)	951
BstKTI	GATC	3 cut(s)	24, 425, 643
BstMAI	GTCTC	1 cut(s)	1011
BstMBI	GATC	3 cut(s)	21, 422, 640
BstMWI	GCNNNNNNNGC	6 cut(s)	57, 302, 584, 845, 862, 943
BstNSI	RCATGY	1 cut(s)	946
BstSFI	CTRYAG	2 cut(s)	163, 582
BstSLI	GKGCMC	1 cut(s)	671
BstUI	CGCG	3 cut(s)	118, 135, 949
BstV1I	GCAGC	5 cut(s)	280, 283, 329, 590, 611
BstX2I	RGATCY	1 cut(s)	21
BstXI	CCANNNNNNTGG	1 cut(s)	497
BstYI	RGATCY	1 cut(s)	21
Bsu15I	ATCGAT	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	98
BsuTUI	ATCGAT	1 cut(s)	184
BtgI	CCRYGG	1 cut(s)	815
BtsI	GCAGTG	1 cut(s)	816
BtsIMutI	CAGTG	3 cut(s)	662, 816, 909
CfoI	GCGC	1 cut(s)	951
ClaI	ATCGAT	1 cut(s)	184
CseI	GACGC	3 cut(s)	124, 574, 828
Csp6I	GTAC	4 cut(s)	75, 128, 328, 979
CviAII	CATG	2 cut(s)	595, 943
CviQI	GTAC	4 cut(s)	75, 128, 328, 979
DdeI	CTNAG	5 cut(s)	147, 644, 722, 747, 873
DpnI	GATC	3 cut(s)	23, 424, 642
DpnII	GATC	3 cut(s)	21, 422, 640
DriI	GACNNNNNGTC	2 cut(s)	400, 916
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	3 cut(s)	372, 431, 517
Eam1105I	GACNNNNNGTC	2 cut(s)	400, 916
EarI	CTCTTC	3 cut(s)	372, 431, 517
EciI	GGCGGA	1 cut(s)	132
Ecl136II	GAGCTC	2 cut(s)	156, 382
Eco130I	CCWWGG	2 cut(s)	102, 550
Eco24I	GRGCYC	2 cut(s)	158, 384
Eco53kI	GAGCTC	2 cut(s)	156, 382
Eco72I	CACGTG	1 cut(s)	302
Eco88I	CYCGRG	2 cut(s)	778, 890
EcoICRI	GAGCTC	2 cut(s)	156, 382
EcoT14I	CCWWGG	2 cut(s)	102, 550
EcoT38I	GRGCYC	2 cut(s)	158, 384
ErhI	CCWWGG	2 cut(s)	102, 550
Esp3I	CGTCTC	1 cut(s)	1011
FaeI	CATG	2 cut(s)	598, 946
FaqI	GGGAC	2 cut(s)	348, 853
FatI	CATG	2 cut(s)	594, 942
FauNDI	CATATG	1 cut(s)	277
FblI	GTMKAC	1 cut(s)	909
Fnu4HI	GCNGC	7 cut(s)	133, 294, 297, 318, 579, 600, 947
FriOI	GRGCYC	2 cut(s)	158, 384
Fsp4HI	GCNGC	7 cut(s)	133, 294, 297, 318, 579, 600, 947
FspBI	CTAG	5 cut(s)	48, 72, 84, 792, 851
GlaI	GCGC	1 cut(s)	950
GluI	GCNGC	7 cut(s)	133, 294, 297, 318, 579, 600, 947
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	2 cut(s)	95, 952
HgaI	GACGC	3 cut(s)	124, 574, 828
HhaI	GCGC	1 cut(s)	951
Hin1I	GRCGYC	2 cut(s)	839, 899
Hin1II	CATG	2 cut(s)	598, 946
Hin6I	GCGC	1 cut(s)	949
HinP1I	GCGC	1 cut(s)	949
HincII	GTYRAC	1 cut(s)	921
HindII	GTYRAC	1 cut(s)	921
HinfI	GANTC	7 cut(s)	137, 171, 236, 730, 743, 781, 797
HpaII	CCGG	2 cut(s)	95, 952
HphI	GGTGA	1 cut(s)	1047
Hpy166II	GTNNAC	5 cut(s)	128, 617, 910, 921, 1073
Hpy188I	TCNGA	1 cut(s)	786
Hpy188III	TCNNGA	2 cut(s)	892, 992
Hpy8I	GTNNAC	5 cut(s)	128, 617, 910, 921, 1073
Hpy99I	CGWCG	3 cut(s)	568, 838, 928
HpyAV	CCTTC	1 cut(s)	1007
HpyCH4III	ACNGT	4 cut(s)	227, 398, 666, 914
HpyCH4IV	ACGT	4 cut(s)	301, 684, 899, 977
HpyCH4V	TGCA	4 cut(s)	299, 848, 865, 1010
HpyF10VI	GCNNNNNNNGC	6 cut(s)	57, 302, 584, 845, 862, 943
HpyF3I	CTNAG	5 cut(s)	147, 644, 722, 747, 873
HpySE526I	ACGT	4 cut(s)	301, 684, 899, 977
Hsp92I	GRCGYC	2 cut(s)	839, 899
Hsp92II	CATG	2 cut(s)	598, 946
HspAI	GCGC	1 cut(s)	949
Kzo9I	GATC	3 cut(s)	21, 422, 640
LguI	GCTCTTC	1 cut(s)	372
LmnI	GCTCC	3 cut(s)	153, 161, 934
LpnPI	CCDG	7 cut(s)	108, 316, 372, 753, 806, 965, 1071
Lsp1109I	GCAGC	5 cut(s)	280, 283, 329, 590, 611
LweI	GCATC	2 cut(s)	190, 1069
MaeI	CTAG	5 cut(s)	48, 72, 84, 792, 851
MaeII	ACGT	4 cut(s)	301, 684, 899, 977
MaeIII	GTNAC	5 cut(s)	172, 237, 628, 650, 660
MalI	GATC	3 cut(s)	23, 424, 642
MboI	GATC	3 cut(s)	21, 422, 640
MboII	GAAGA	8 cut(s)	31, 299, 389, 422, 448, 513, 534, 584
MflI	RGATCY	1 cut(s)	21
MhlI	GDGCHC	4 cut(s)	158, 384, 671, 791
MluCI	AATT	2 cut(s)	352, 516
MluI	ACGCGT	1 cut(s)	116
MlyI	GAGTC	5 cut(s)	131, 180, 245, 790, 806
MmeI	TCCRAC	1 cut(s)	209
MseI	TTAA	3 cut(s)	323, 621, 1040
MslI	CAYNNNNRTG	1 cut(s)	495
MspA1I	CMGCKG	1 cut(s)	151
MspI	CCGG	2 cut(s)	95, 952
MvnI	CGCG	3 cut(s)	118, 135, 949
MwoI	GCNNNNNNNGC	6 cut(s)	57, 302, 584, 845, 862, 943
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	3 cut(s)	21, 422, 640
NlaIII	CATG	2 cut(s)	598, 946
NlaIV	GGNNCC	2 cut(s)	556, 936
NmuCI	GTSAC	3 cut(s)	172, 237, 660
NspI	RCATGY	1 cut(s)	946
PaeR7I	CTCGAG	1 cut(s)	890
PciSI	GCTCTTC	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	1 cut(s)	923
PfeI	GAWTC	2 cut(s)	730, 743
PkrI	GCNGC	7 cut(s)	134, 295, 298, 319, 580, 601, 948
PleI	GAGTC	5 cut(s)	131, 179, 244, 789, 805
PmaCI	CACGTG	1 cut(s)	302
PmlI	CACGTG	1 cut(s)	302
PpsI	GAGTC	5 cut(s)	131, 179, 244, 789, 805
Ppu21I	YACGTR	1 cut(s)	302
Psp124BI	GAGCTC	2 cut(s)	158, 384
Psp1406I	AACGTT	1 cut(s)	684
PspCI	CACGTG	1 cut(s)	302
PspN4I	GGNNCC	2 cut(s)	556, 936
PsuI	RGATCY	1 cut(s)	21
RsaI	GTAC	4 cut(s)	76, 129, 329, 980
RsaNI	GTAC	4 cut(s)	75, 128, 328, 979
RseI	CAYNNNNRTG	1 cut(s)	495
SacI	GAGCTC	2 cut(s)	158, 384
SapI	GCTCTTC	1 cut(s)	372
SaqAI	TTAA	3 cut(s)	323, 621, 1040
SatI	GCNGC	7 cut(s)	133, 294, 297, 318, 579, 600, 947
Sau3AI	GATC	3 cut(s)	21, 422, 640
ScaI	AGTACT	2 cut(s)	76, 329
SchI	GAGTC	5 cut(s)	131, 180, 245, 790, 806
SduI	GDGCHC	4 cut(s)	158, 384, 671, 791
SfaNI	GCATC	2 cut(s)	190, 1069
SfcI	CTRYAG	2 cut(s)	163, 582
Sfr274I	CTCGAG	1 cut(s)	890
SlaI	CTCGAG	1 cut(s)	890
SmiMI	CAYNNNNRTG	1 cut(s)	495
SmlI	CTYRAG	1 cut(s)	890
SmoI	CTYRAG	1 cut(s)	890
SpeI	ACTAGT	2 cut(s)	71, 83
Sse9I	AATT	2 cut(s)	352, 516
SsiI	CCGC	5 cut(s)	112, 133, 143, 151, 947
SspMI	CTAG	5 cut(s)	48, 72, 84, 792, 851
SstI	GAGCTC	2 cut(s)	158, 384
StyI	CCWWGG	2 cut(s)	102, 550
TaaI	ACNGT	4 cut(s)	227, 398, 666, 914
TaiI	ACGT	4 cut(s)	304, 687, 902, 980
TaqI	TCGA	5 cut(s)	184, 514, 639, 728, 891
TasI	AATT	2 cut(s)	352, 516
TatI	WGTACW	2 cut(s)	74, 327
TauI	GCSGC	2 cut(s)	135, 949
TfiI	GAWTC	2 cut(s)	730, 743
Tru1I	TTAA	3 cut(s)	323, 621, 1040
Tru9I	TTAA	3 cut(s)	323, 621, 1040
TscAI	CASTG	3 cut(s)	669, 816, 909
TseFI	GTSAC	3 cut(s)	172, 237, 660
TseI	GCWGC	5 cut(s)	293, 296, 317, 578, 599
Tsp45I	GTSAC	3 cut(s)	172, 237, 660
TspDTI	ATGAA	3 cut(s)	216, 300, 1055
TspRI	CASTG	3 cut(s)	669, 816, 909
XceI	RCATGY	1 cut(s)	946
XhoI	CTCGAG	1 cut(s)	890
XmiI	GTMKAC	1 cut(s)	909
XspI	CTAG	5 cut(s)	48, 72, 84, 792, 851
ZraI	GACGTC	1 cut(s)	900
ZrmI	AGTACT	2 cut(s)	76, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.