Rw4G010640

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
24757527 .. 24759940
2414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G010640.1

Sequence Viewer

Length: 1104 bp
ATGGCCAAGTTATCACCTCAGAACCAGAAAACCAATGCAAGTAATAATGCAACTACTACTGCTGCTGTTAATAATGCAAATGCAGCTAATAAAACTGTAGTCACAAAGGTGAAACGAACCAGGAGAAGTGTGCCGAGGGACTCCCCACCTCAACGCAGCTCCATTTATCGAGGCGTCACCAGGCATCGATGGACTGGCCGATATGAGGCTCATCTGTGGGACAAGAATTGCTGGAATGAATCACAAAACAAGAAAGGCCGCCAAGTATACCTCGGAGCATATGATGATGAAGAAGCTGCAGCACATGCTTATGACTTAGCAGCGCTTAAGTACTGGGGTCAAGATACCATTCTTAACTTTCCGTTAGCTACATATCACAAAGAAATGAATGATATGGAAGGCCAATCAAGAGAGGAATATATTGGATCCTTGAGAAGGAAGAGCAGTGGTTTTTCTCGTGGAGTTTCCAAATACAGAGGTGTTGCTAGACATCATCACAATGGAAGATGGGAAGCTCGAATTGGCCGGGTCTTTGGAAACAAATATCTCTATCTAGGGACATATGCTACCCAAGAAGAGGCTGCAACAGCTTATGACATGGCAGCTATAGAGTATCGTGGTCTCAATGCAGTTACCAACTTTGATCTCAGCCGTTACATCAAATGGCTAAAACCAAATGGTCCTAACAATGACATTATTGCCCAGACAACTAACCCTAACGTTGAAGCTAAATTGGTTGGAAATGTAACCCAAAACCCTAATGATCAAGACCAAACTGGACTAGGTTCCTTCCACAACCTCGCATACAGTCCTCCTGAAGAAATCACAATGACCCAGTTGCCTCGGCCGACCACTGCTACTTCAGCCCTAGGACTCCTGCTTCAGTCATCAAAGTTCAAGGAGATGATGGAGATGACAACGGCCACCGACTCATCCATGACATCGTCATCCCTGCCGGAACTGCCTCAGTGCACTTTTCCCGATGACATACAGACTTACTTCGACTGCCAAGATTCTACGAGCTATGGAGAGGGAGACGATGCTATGTTCAGTGAGCTCAACTCATACATCCCGTCCATGTTTCAATGCGATTTCACCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

367

Amino Acids

41.28

Weight (kDa)

7.09

Isoelectric Point (pI)

47.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 56 - 113 2.6e-11 AP2 domain
AP2 PF00847 156 - 207 2.1e-11 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 267
AciI CCGC 1 cut(s) 259
AclI AACGTT 1 cut(s) 720
AclWI GGATC 2 cut(s) 420, 433
AcoI YGGCCR 5 cut(s) 3, 196, 523, 845, 921
AcuI CTGAAG 3 cut(s) 837, 846, 866
AcyI GRCGYC 1 cut(s) 174
AfaI GTAC 1 cut(s) 332
AfeI AGCGCT 1 cut(s) 324
AfiI CCNNNNNNNGG 3 cut(s) 205, 435, 577
AflII CTTAAG 1 cut(s) 326
AgsI TTSAA 3 cut(s) 725, 898, 1085
AjnI CCWGG 2 cut(s) 119, 179
AjuI GAANNNNNNNTTGG 2 cut(s) 504, 536
AleI CACNNNNGTG 1 cut(s) 107
Alw21I GWGCWC 2 cut(s) 974, 1059
Alw26I GTCTC 2 cut(s) 626, 1029
Alw44I GTGCAC 1 cut(s) 970
AlwI GGATC 2 cut(s) 420, 433
Aor51HI AGCGCT 1 cut(s) 324
AoxI GGCC 7 cut(s) 3, 196, 256, 400, 523, 845, 921
ApaLI GTGCAC 1 cut(s) 970
ApeKI GCWGC 8 cut(s) 62, 83, 156, 296, 299, 320, 581, 602
AspA2I CCTAGG 1 cut(s) 868
AspLEI GCGC 1 cut(s) 325
AspS9I GGNCC 1 cut(s) 680
AsuC2I CCSGG 1 cut(s) 527
AsuHPI GGTGA 4 cut(s) 6, 121, 169, 1087
AvaII GGWCC 1 cut(s) 680
AvrII CCTAGG 1 cut(s) 868
BaeGI GKGCMC 1 cut(s) 974
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 425
BanII GRGCYC 1 cut(s) 1059
BauI CACGAG 1 cut(s) 456
Bbv12I GWGCWC 2 cut(s) 974, 1059
BbvI GCAGC 8 cut(s) 49, 95, 168, 283, 311, 332, 568, 614
BccI CCATC 3 cut(s) 183, 501, 901
BceAI ACGGC 2 cut(s) 636, 936
BciT130I CCWGG 2 cut(s) 121, 181
BclI TGATCA 1 cut(s) 763
BcnI CCSGG 1 cut(s) 527
BcoDI GTCTC 2 cut(s) 626, 1029
BfaI CTAG 5 cut(s) 486, 554, 782, 869, 1102
BfmI CTRYAG 3 cut(s) 96, 297, 606
BfoI RGCGCY 1 cut(s) 326
BfrI CTTAAG 1 cut(s) 326
BisI GCNGC 9 cut(s) 63, 84, 157, 259, 297, 300, 321, 582, 603
BlnI CCTAGG 1 cut(s) 868
BlsI GCNGC 9 cut(s) 64, 85, 158, 260, 298, 301, 322, 583, 604
BmcAI AGTACT 1 cut(s) 332
Bme1390I CCNGG 3 cut(s) 121, 181, 527
Bme18I GGWCC 1 cut(s) 680
BmgT120I GGNCC 1 cut(s) 680
BmiI GGNNCC 2 cut(s) 427, 787
BmrFI CCNGG 3 cut(s) 121, 181, 527
BmrI ACTGGG 2 cut(s) 343, 829
BmsI GCATC 2 cut(s) 193, 1030
BmuI ACTGGG 2 cut(s) 343, 829
BplI GAGNNNNNCTC 2 cut(s) 1046, 1078
BpuEI CTTGAG 1 cut(s) 451
BpuMI CCSGG 1 cut(s) 527
Bsa29I ATCGAT 1 cut(s) 187
BsaHI GRCGYC 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 626
BsaJI CCNNGG 4 cut(s) 134, 271, 842, 868
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 435, 577
Bse1I ACTGG 4 cut(s) 199, 338, 781, 835
BseBI CCWGG 2 cut(s) 121, 181
BseCI ATCGAT 1 cut(s) 187
BseDI CCNNGG 4 cut(s) 134, 271, 842, 868
BseGI GGATG 3 cut(s) 932, 947, 1068
BseLI CCNNNNNNNGG 3 cut(s) 205, 435, 577
BseMII CTCAG 3 cut(s) 32, 661, 980
BseNI ACTGG 4 cut(s) 199, 338, 781, 835
BseSI GKGCMC 1 cut(s) 974
BseX3I CGGCCG 1 cut(s) 845
BseXI GCAGC 8 cut(s) 49, 95, 168, 283, 311, 332, 568, 614
Bsh1285I CGRYCG 1 cut(s) 848
BshFI GGCC 7 cut(s) 5, 198, 258, 402, 525, 847, 923
BshVI ATCGAT 1 cut(s) 187
BsiEI CGRYCG 1 cut(s) 848
BsiHKAI GWGCWC 2 cut(s) 974, 1059
BsiSI CCGG 2 cut(s) 526, 956
BslFI GGGAC 3 cut(s) 152, 233, 571
BslI CCNNNNNNNGG 3 cut(s) 205, 435, 577
BsmAI GTCTC 2 cut(s) 626, 1029
BsmBI CGTCTC 1 cut(s) 1029
BsmFI GGGAC 3 cut(s) 152, 233, 571
BsnI GGCC 7 cut(s) 5, 198, 258, 402, 525, 847, 923
Bso31I GGTCTC 1 cut(s) 626
Bsp1286I GDGCHC 2 cut(s) 974, 1059
Bsp143I GATC 3 cut(s) 425, 643, 763
BspACI CCGC 1 cut(s) 259
BspANI GGCC 7 cut(s) 5, 198, 258, 402, 525, 847, 923
BspCNI CTCAG 3 cut(s) 31, 660, 979
BspDI ATCGAT 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 427, 787
BspMAI CTGCAG 1 cut(s) 301
BspPI GGATC 2 cut(s) 420, 433
BspQI GCTCTTC 1 cut(s) 434
BspTI CTTAAG 1 cut(s) 326
BspTNI GGTCTC 1 cut(s) 626
BsrI ACTGG 4 cut(s) 199, 338, 781, 835
BssECI CCNNGG 4 cut(s) 134, 271, 842, 868
BssMI GATC 3 cut(s) 425, 643, 763
BssNAI GTATAC 1 cut(s) 268
BssNI GRCGYC 1 cut(s) 174
BssSI CACGAG 1 cut(s) 456
BssT1I CCWWGG 1 cut(s) 868
Bst1107I GTATAC 1 cut(s) 268
Bst2BI CACGAG 1 cut(s) 456
Bst2UI CCWGG 2 cut(s) 121, 181
Bst4CI ACNGT 3 cut(s) 97, 809, 1099
Bst6I CTCTTC 2 cut(s) 434, 570
BstACI GRCGYC 1 cut(s) 174
BstAFI CTTAAG 1 cut(s) 326
BstAPI GCANNNNNTGC 1 cut(s) 305
BstDEI CTNAG 4 cut(s) 18, 316, 647, 966
BstENI CCTNNNNNAGG 1 cut(s) 433
BstF5I GGATG 3 cut(s) 932, 947, 1068
BstH2I RGCGCY 1 cut(s) 326
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 3 cut(s) 428, 646, 766
BstMAI GTCTC 2 cut(s) 626, 1029
BstMBI GATC 3 cut(s) 425, 643, 763
BstMCI CGRYCG 1 cut(s) 848
BstMWI GCNNNNNNNGC 5 cut(s) 83, 305, 587, 863, 961
BstNI CCWGG 2 cut(s) 121, 181
BstNSI RCATGY 1 cut(s) 308
BstSCI CCNGG 3 cut(s) 119, 179, 525
BstSFI CTRYAG 3 cut(s) 96, 297, 606
BstSLI GKGCMC 1 cut(s) 974
BstV1I GCAGC 8 cut(s) 49, 95, 168, 283, 311, 332, 568, 614
BstX2I RGATCY 1 cut(s) 425
BstYI RGATCY 1 cut(s) 425
BstZ17I GTATAC 1 cut(s) 268
BstZI CGGCCG 1 cut(s) 845
Bsu15I ATCGAT 1 cut(s) 187
BsuRI GGCC 7 cut(s) 5, 198, 258, 402, 525, 847, 923
BsuTUI ATCGAT 1 cut(s) 187
BtsCI GGATG 3 cut(s) 932, 947, 1068
BtsI GCAGTG 2 cut(s) 451, 852
BtsIMutI CAGTG 4 cut(s) 451, 852, 974, 1057
CfoI GCGC 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 680
ClaI ATCGAT 1 cut(s) 187
CseI GACGC 1 cut(s) 163
Csp6I GTAC 1 cut(s) 331
CviAII CATG 4 cut(s) 305, 598, 937, 1078
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 4 cut(s) 18, 316, 647, 966
DpnI GATC 3 cut(s) 427, 645, 765
DpnII GATC 3 cut(s) 425, 643, 763
EaeI YGGCCR 5 cut(s) 3, 196, 523, 845, 921
EagI CGGCCG 1 cut(s) 845
Eam1104I CTCTTC 2 cut(s) 434, 570
EarI CTCTTC 2 cut(s) 434, 570
Ecl136II GAGCTC 1 cut(s) 1057
EclXI CGGCCG 1 cut(s) 845
Eco130I CCWWGG 1 cut(s) 868
Eco24I GRGCYC 1 cut(s) 1059
Eco31I GGTCTC 1 cut(s) 626
Eco47I GGWCC 1 cut(s) 680
Eco47III AGCGCT 1 cut(s) 324
Eco52I CGGCCG 1 cut(s) 845
Eco53kI GAGCTC 1 cut(s) 1057
Eco57I CTGAAG 3 cut(s) 837, 846, 866
EcoICRI GAGCTC 1 cut(s) 1057
EcoNI CCTNNNNNAGG 1 cut(s) 433
EcoRII CCWGG 2 cut(s) 119, 179
EcoT14I CCWWGG 1 cut(s) 868
EcoT38I GRGCYC 1 cut(s) 1059
ErhI CCWWGG 1 cut(s) 868
Esp3I CGTCTC 1 cut(s) 1029
FaeI CATG 4 cut(s) 308, 601, 940, 1081
FaqI GGGAC 3 cut(s) 152, 233, 571
FatI CATG 4 cut(s) 304, 597, 936, 1077
FauNDI CATATG 2 cut(s) 280, 562
FbaI TGATCA 1 cut(s) 763
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 9 cut(s) 63, 84, 157, 259, 297, 300, 321, 582, 603
FokI GGATG 3 cut(s) 919, 934, 1055
FriOI GRGCYC 1 cut(s) 1059
Fsp4HI GCNGC 9 cut(s) 63, 84, 157, 259, 297, 300, 321, 582, 603
FspBI CTAG 5 cut(s) 486, 554, 782, 869, 1102
GlaI GCGC 1 cut(s) 324
GluI GCNGC 9 cut(s) 63, 84, 157, 259, 297, 300, 321, 582, 603
HaeII RGCGCY 1 cut(s) 326
HaeIII GGCC 7 cut(s) 5, 198, 258, 402, 525, 847, 923
HapII CCGG 2 cut(s) 526, 956
HgaI GACGC 1 cut(s) 163
HhaI GCGC 1 cut(s) 325
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 4 cut(s) 308, 601, 940, 1081
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HinfI GANTC 5 cut(s) 140, 239, 873, 929, 1013
HpaII CCGG 2 cut(s) 526, 956
HphI GGTGA 4 cut(s) 6, 121, 169, 1087
Hpy166II GTNNAC 2 cut(s) 268, 972
Hpy188I TCNGA 2 cut(s) 21, 275
Hpy188III TCNNGA 5 cut(s) 341, 408, 767, 815, 980
Hpy8I GTNNAC 2 cut(s) 268, 972
HpyAV CCTTC 3 cut(s) 392, 429, 799
HpyCH4III ACNGT 3 cut(s) 97, 809, 1099
HpyCH4IV ACGT 1 cut(s) 720
HpyCH4V TGCA 8 cut(s) 38, 50, 77, 83, 299, 584, 629, 972
HpyF10VI GCNNNNNNNGC 5 cut(s) 83, 305, 587, 863, 961
HpyF3I CTNAG 4 cut(s) 18, 316, 647, 966
HpySE526I ACGT 1 cut(s) 720
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 4 cut(s) 308, 601, 940, 1081
HspAI GCGC 1 cut(s) 323
Ksp22I TGATCA 1 cut(s) 763
Kzo9I GATC 3 cut(s) 425, 643, 763
LguI GCTCTTC 1 cut(s) 434
LmnI GCTCC 2 cut(s) 164, 275
Lsp1109I GCAGC 8 cut(s) 49, 95, 168, 283, 311, 332, 568, 614
LweI GCATC 2 cut(s) 193, 1030
MaeI CTAG 5 cut(s) 486, 554, 782, 869, 1102
MaeII ACGT 1 cut(s) 720
MaeIII GTNAC 5 cut(s) 100, 175, 631, 653, 745
MalI GATC 3 cut(s) 427, 645, 765
MboI GATC 3 cut(s) 425, 643, 763
MboII GAAGA 5 cut(s) 302, 451, 516, 587, 830
MflI RGATCY 1 cut(s) 425
MhlI GDGCHC 2 cut(s) 974, 1059
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 226, 519, 731
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 134, 867, 923
MmeI TCCRAC 1 cut(s) 718
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 69, 327, 354
MslI CAYNNNNRTG 3 cut(s) 107, 309, 498
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 326
MspI CCGG 2 cut(s) 526, 956
MspR9I CCNGG 3 cut(s) 121, 181, 527
MvaI CCWGG 2 cut(s) 121, 181
MwoI GCNNNNNNNGC 5 cut(s) 83, 305, 587, 863, 961
NciI CCSGG 1 cut(s) 527
NdeI CATATG 2 cut(s) 280, 562
NdeII GATC 3 cut(s) 425, 643, 763
NlaIII CATG 4 cut(s) 308, 601, 940, 1081
NlaIV GGNNCC 2 cut(s) 427, 787
NmeAIII GCCGAG 2 cut(s) 159, 823
NmuCI GTSAC 2 cut(s) 100, 175
NspI RCATGY 1 cut(s) 308
OliI CACNNNNGTG 1 cut(s) 107
PciSI GCTCTTC 1 cut(s) 434
PfeI GAWTC 2 cut(s) 239, 1013
PflFI GACNNNGTC 1 cut(s) 943
PkrI GCNGC 9 cut(s) 64, 85, 158, 260, 298, 301, 322, 583, 604
PleI GAGTC 3 cut(s) 134, 867, 923
PpsI GAGTC 3 cut(s) 134, 867, 923
Psp124BI GAGCTC 1 cut(s) 1059
Psp1406I AACGTT 1 cut(s) 720
Psp6I CCWGG 2 cut(s) 119, 179
PspGI CCWGG 2 cut(s) 119, 179
PspN4I GGNNCC 2 cut(s) 427, 787
PspPI GGNCC 1 cut(s) 680
PstI CTGCAG 1 cut(s) 301
PsuI RGATCY 1 cut(s) 425
PsyI GACNNNGTC 1 cut(s) 943
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
RseI CAYNNNNRTG 3 cut(s) 107, 309, 498
SacI GAGCTC 1 cut(s) 1059
SapI GCTCTTC 1 cut(s) 434
SaqAI TTAA 3 cut(s) 69, 327, 354
SatI GCNGC 9 cut(s) 63, 84, 157, 259, 297, 300, 321, 582, 603
Sau3AI GATC 3 cut(s) 425, 643, 763
Sau96I GGNCC 1 cut(s) 680
ScaI AGTACT 1 cut(s) 332
SchI GAGTC 3 cut(s) 134, 867, 923
ScrFI CCNGG 3 cut(s) 121, 181, 527
SduI GDGCHC 2 cut(s) 974, 1059
SfaNI GCATC 2 cut(s) 193, 1030
SfcI CTRYAG 3 cut(s) 96, 297, 606
SinI GGWCC 1 cut(s) 680
SmiMI CAYNNNNRTG 3 cut(s) 107, 309, 498
SmlI CTYRAG 2 cut(s) 326, 430
SmoI CTYRAG 2 cut(s) 326, 430
Sse9I AATT 3 cut(s) 226, 519, 731
SsiI CCGC 1 cut(s) 259
SspMI CTAG 5 cut(s) 486, 554, 782, 869, 1102
SstI GAGCTC 1 cut(s) 1059
StyD4I CCNGG 3 cut(s) 119, 179, 525
StyI CCWWGG 1 cut(s) 868
TaaI ACNGT 3 cut(s) 97, 809, 1099
TaiI ACGT 1 cut(s) 723
TaqI TCGA 4 cut(s) 169, 187, 517, 1002
TasI AATT 3 cut(s) 226, 519, 731
TatI WGTACW 1 cut(s) 330
TauI GCSGC 1 cut(s) 261
TfiI GAWTC 2 cut(s) 239, 1013
Tru1I TTAA 3 cut(s) 69, 327, 354
Tru9I TTAA 3 cut(s) 69, 327, 354
TscAI CASTG 4 cut(s) 451, 859, 974, 1057
TseFI GTSAC 2 cut(s) 100, 175
TseI GCWGC 8 cut(s) 62, 83, 156, 296, 299, 320, 581, 602
Tsp45I GTSAC 2 cut(s) 100, 175
TspDTI ATGAA 3 cut(s) 252, 303, 401
TspGWI ACGGA 1 cut(s) 351
TspRI CASTG 4 cut(s) 451, 859, 974, 1057
Tth111I GACNNNGTC 1 cut(s) 943
Vha464I CTTAAG 1 cut(s) 326
VneI GTGCAC 1 cut(s) 970
VpaK11BI GGWCC 1 cut(s) 680
XagI CCTNNNNNAGG 1 cut(s) 433
XceI RCATGY 1 cut(s) 308
XmaJI CCTAGG 1 cut(s) 868
XmiI GTMKAC 1 cut(s) 267
XspI CTAG 5 cut(s) 486, 554, 782, 869, 1102
ZrmI AGTACT 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.