RLG00000008847

AP2-like ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002197
Physical Location & Seq
Forward (+)
40997380 .. 40999743
2364 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008847

Sequence Viewer

Length: 1134 bp
ATGGCCAAGTTATCACCTCAGAACCAGAAAACCAATGCAAGTAATAATGCAACTACTACTGCTGCTGTTAATAATGCAAATGCAGCTAATAAAACTGCAGTCACAAAGGTGAAACGAACCAGGAGAAGTGTGCCAAGGGACTCCCCACCTCAACGCAGTTCCATTTATCGAGGCGTCACCAGTTGCATCATTAATTCAATCGATCTGTGTCTAAATGATCTTTGTTTCCTTCTTGGCTTTGTGCTGCTGCTGTTTTATACTTGGATTGTTACACAAAATGCATTTTTTATATTAATTTTTTCAGGAGCATATGATGATGAAGAAGCTGCAGCACATGCTTATGACTTAGCAGCGCTTAAGTACTGGGGTCAAGATACCATTCTTAACTTTCCGTTAGCTACATATCACAAAGAAATGAATGATATGGAAGGCCAATCAAGAGAGGAATATATTGGATCCTTGAGAAGGAAGAGCAGTGGTTTTTCTCGTGGAGTTTCCAAATACAGAGGTGTTGCTAGACATCATCACAATGGAAGATGGGAAGCTCGAATTGGCCGGGTCTTCGGAAACAAATATCTCTATCTAGGGACATATGCTACCCAAGAAGAGGCTGCAACAGCTTATGACATGGCAGCTATAGAGTATCGTGGTCTCAATGCAGTTACCAACTTTGATCTCAGCCGTTACATCAAATGGCTAAAACCAAATGGTCCTAACAATGACATTGTTGCCCAGACAACTAACCCTAACGTTGAAGCTAAATTGGTTGGAGATATAACCCAAAACCCTAATGATCAAGACCAAACTGGACTAGGTTTCTTCCACAACCTCGCATACAGTCCTCCTGAAGAAATCACAATGACCCAATTGCCTCGGCCGACCACTGCTACTTCAGCCCTAGGACTCCTGCTTCAGTCATCAAAGTTCAAGGAGATGATGGAGATGACAACGGCCACCGACTCATCCATGACATCGTCATCCAAGCCGGAACTGCCTCAGTGCACTTTTCCCGATGACATACAGACTTACTTCGACTGCCAAGATTCTACGAGCTATGGAGATGGAGACGATGCTATGTTCAGTGAGCTCAACTCATACATCCCGTCCATGTTTCAATGCGATTTCACCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

378

Amino Acids

42.1

Weight (kDa)

5.59

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 166 - 217 2.2e-11 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 750
AclWI GGATC 2 cut(s) 450, 463
AcoI YGGCCR 4 cut(s) 3, 553, 875, 951
AcuI CTGAAG 3 cut(s) 867, 876, 896
AcyI GRCGYC 1 cut(s) 174
AfaI GTAC 1 cut(s) 362
AfeI AGCGCT 1 cut(s) 354
AfiI CCNNNNNNNGG 2 cut(s) 465, 607
AflII CTTAAG 1 cut(s) 356
AgsI TTSAA 4 cut(s) 198, 755, 928, 1115
AjnI CCWGG 1 cut(s) 119
AjuI GAANNNNNNNTTGG 2 cut(s) 534, 566
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 9 cut(s) 86, 326, 398, 545, 620, 635, 758, 1053, 1087
AluI AGCT 9 cut(s) 86, 326, 398, 545, 620, 635, 758, 1053, 1087
Alw21I GWGCWC 2 cut(s) 1004, 1089
Alw26I GTCTC 2 cut(s) 656, 1059
Alw44I GTGCAC 1 cut(s) 1000
AlwI GGATC 2 cut(s) 450, 463
Aor51HI AGCGCT 1 cut(s) 354
AoxI GGCC 5 cut(s) 3, 430, 553, 875, 951
ApaLI GTGCAC 1 cut(s) 1000
ApeKI GCWGC 9 cut(s) 62, 83, 244, 247, 326, 329, 350, 611, 632
AseI ATTAAT 2 cut(s) 192, 293
AspA2I CCTAGG 1 cut(s) 898
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 1 cut(s) 710
AsuC2I CCSGG 1 cut(s) 557
AsuHPI GGTGA 4 cut(s) 6, 121, 169, 1117
AvaII GGWCC 1 cut(s) 710
AvrII CCTAGG 1 cut(s) 898
BaeGI GKGCMC 1 cut(s) 1004
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 455
BanII GRGCYC 1 cut(s) 1089
BauI CACGAG 1 cut(s) 486
BbsI GAAGAC 1 cut(s) 553
Bbv12I GWGCWC 2 cut(s) 1004, 1089
BbvI GCAGC 9 cut(s) 49, 95, 231, 234, 313, 341, 362, 598, 644
BccI CCATC 3 cut(s) 531, 931, 1055
BceAI ACGGC 2 cut(s) 666, 966
BciT130I CCWGG 1 cut(s) 121
BclI TGATCA 1 cut(s) 793
BcnI CCSGG 1 cut(s) 557
BcoDI GTCTC 2 cut(s) 656, 1059
BfaI CTAG 5 cut(s) 516, 584, 812, 899, 1132
BfmI CTRYAG 3 cut(s) 96, 327, 636
BfoI RGCGCY 1 cut(s) 356
BfrI CTTAAG 1 cut(s) 356
BisI GCNGC 9 cut(s) 63, 84, 245, 248, 327, 330, 351, 612, 633
BlnI CCTAGG 1 cut(s) 898
BlsI GCNGC 9 cut(s) 64, 85, 246, 249, 328, 331, 352, 613, 634
BmcAI AGTACT 1 cut(s) 362
Bme1390I CCNGG 2 cut(s) 121, 557
Bme18I GGWCC 1 cut(s) 710
BmgT120I GGNCC 1 cut(s) 710
BmiI GGNNCC 1 cut(s) 457
BmrFI CCNGG 2 cut(s) 121, 557
BmrI ACTGGG 1 cut(s) 373
BmsI GCATC 2 cut(s) 195, 1060
BmuI ACTGGG 1 cut(s) 373
BpiI GAAGAC 1 cut(s) 553
BplI GAGNNNNNCTC 2 cut(s) 1076, 1108
BpuEI CTTGAG 1 cut(s) 481
BpuMI CCSGG 1 cut(s) 557
Bsa29I ATCGAT 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 656
BsaJI CCNNGG 3 cut(s) 134, 872, 898
Bsc4I CCNNNNNNNGG 2 cut(s) 465, 607
Bse1I ACTGG 3 cut(s) 180, 368, 811
BseBI CCWGG 1 cut(s) 121
BseCI ATCGAT 1 cut(s) 201
BseDI CCNNGG 3 cut(s) 134, 872, 898
BseGI GGATG 3 cut(s) 962, 977, 1098
BseLI CCNNNNNNNGG 2 cut(s) 465, 607
BseMII CTCAG 3 cut(s) 32, 691, 1010
BseNI ACTGG 3 cut(s) 180, 368, 811
BseSI GKGCMC 1 cut(s) 1004
BseX3I CGGCCG 1 cut(s) 875
BseXI GCAGC 9 cut(s) 49, 95, 231, 234, 313, 341, 362, 598, 644
Bsh1285I CGRYCG 1 cut(s) 878
BshFI GGCC 5 cut(s) 5, 432, 555, 877, 953
BshVI ATCGAT 1 cut(s) 201
BsiEI CGRYCG 1 cut(s) 878
BsiHKAI GWGCWC 2 cut(s) 1004, 1089
BsiSI CCGG 2 cut(s) 556, 986
BslFI GGGAC 2 cut(s) 152, 601
BslI CCNNNNNNNGG 2 cut(s) 465, 607
BsmAI GTCTC 2 cut(s) 656, 1059
BsmBI CGTCTC 1 cut(s) 1059
BsmFI GGGAC 2 cut(s) 152, 601
BsnI GGCC 5 cut(s) 5, 432, 555, 877, 953
Bso31I GGTCTC 1 cut(s) 656
Bsp1286I GDGCHC 2 cut(s) 1004, 1089
Bsp143I GATC 5 cut(s) 202, 217, 455, 673, 793
BspANI GGCC 5 cut(s) 5, 432, 555, 877, 953
BspCNI CTCAG 3 cut(s) 31, 690, 1009
BspDI ATCGAT 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 457
BspMAI CTGCAG 2 cut(s) 100, 331
BspPI GGATC 2 cut(s) 450, 463
BspQI GCTCTTC 1 cut(s) 464
BspTI CTTAAG 1 cut(s) 356
BspTNI GGTCTC 1 cut(s) 656
BsrI ACTGG 3 cut(s) 180, 368, 811
BssECI CCNNGG 3 cut(s) 134, 872, 898
BssMI GATC 5 cut(s) 202, 217, 455, 673, 793
BssNI GRCGYC 1 cut(s) 174
BssSI CACGAG 1 cut(s) 486
BssT1I CCWWGG 2 cut(s) 134, 898
Bst2BI CACGAG 1 cut(s) 486
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 2 cut(s) 839, 1129
Bst6I CTCTTC 2 cut(s) 464, 600
BstACI GRCGYC 1 cut(s) 174
BstAFI CTTAAG 1 cut(s) 356
BstAPI GCANNNNNTGC 1 cut(s) 335
BstDEI CTNAG 4 cut(s) 18, 346, 677, 996
BstENI CCTNNNNNAGG 1 cut(s) 463
BstF5I GGATG 3 cut(s) 962, 977, 1098
BstH2I RGCGCY 1 cut(s) 356
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 5 cut(s) 205, 220, 458, 676, 796
BstMAI GTCTC 2 cut(s) 656, 1059
BstMBI GATC 5 cut(s) 202, 217, 455, 673, 793
BstMCI CGRYCG 1 cut(s) 878
BstMWI GCNNNNNNNGC 5 cut(s) 83, 335, 617, 893, 991
BstNI CCWGG 1 cut(s) 121
BstNSI RCATGY 1 cut(s) 338
BstSCI CCNGG 2 cut(s) 119, 555
BstSFI CTRYAG 3 cut(s) 96, 327, 636
BstSLI GKGCMC 1 cut(s) 1004
BstV1I GCAGC 9 cut(s) 49, 95, 231, 234, 313, 341, 362, 598, 644
BstV2I GAAGAC 1 cut(s) 553
BstX2I RGATCY 1 cut(s) 455
BstYI RGATCY 1 cut(s) 455
BstZI CGGCCG 1 cut(s) 875
Bsu15I ATCGAT 1 cut(s) 201
BsuRI GGCC 5 cut(s) 5, 432, 555, 877, 953
BsuTUI ATCGAT 1 cut(s) 201
BtsCI GGATG 3 cut(s) 962, 977, 1098
BtsI GCAGTG 2 cut(s) 481, 882
BtsIMutI CAGTG 4 cut(s) 481, 882, 1004, 1087
CfoI GCGC 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 710
ClaI ATCGAT 1 cut(s) 201
CseI GACGC 1 cut(s) 163
Csp6I GTAC 1 cut(s) 361
CviAII CATG 4 cut(s) 335, 628, 967, 1108
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 4 cut(s) 18, 346, 677, 996
DpnI GATC 5 cut(s) 204, 219, 457, 675, 795
DpnII GATC 5 cut(s) 202, 217, 455, 673, 793
EaeI YGGCCR 4 cut(s) 3, 553, 875, 951
EagI CGGCCG 1 cut(s) 875
Eam1104I CTCTTC 2 cut(s) 464, 600
EarI CTCTTC 2 cut(s) 464, 600
Ecl136II GAGCTC 1 cut(s) 1087
EclXI CGGCCG 1 cut(s) 875
Eco130I CCWWGG 2 cut(s) 134, 898
Eco24I GRGCYC 1 cut(s) 1089
Eco31I GGTCTC 1 cut(s) 656
Eco47I GGWCC 1 cut(s) 710
Eco47III AGCGCT 1 cut(s) 354
Eco52I CGGCCG 1 cut(s) 875
Eco53kI GAGCTC 1 cut(s) 1087
Eco57I CTGAAG 3 cut(s) 867, 876, 896
EcoICRI GAGCTC 1 cut(s) 1087
EcoNI CCTNNNNNAGG 1 cut(s) 463
EcoRII CCWGG 1 cut(s) 119
EcoT14I CCWWGG 2 cut(s) 134, 898
EcoT22I ATGCAT 1 cut(s) 283
EcoT38I GRGCYC 1 cut(s) 1089
ErhI CCWWGG 2 cut(s) 134, 898
Esp3I CGTCTC 1 cut(s) 1059
FaeI CATG 4 cut(s) 338, 631, 970, 1111
FaqI GGGAC 2 cut(s) 152, 601
FatI CATG 4 cut(s) 334, 627, 966, 1107
FauNDI CATATG 2 cut(s) 310, 592
FbaI TGATCA 1 cut(s) 793
Fnu4HI GCNGC 9 cut(s) 63, 84, 245, 248, 327, 330, 351, 612, 633
FokI GGATG 3 cut(s) 949, 964, 1085
FriOI GRGCYC 1 cut(s) 1089
Fsp4HI GCNGC 9 cut(s) 63, 84, 245, 248, 327, 330, 351, 612, 633
FspBI CTAG 5 cut(s) 516, 584, 812, 899, 1132
GlaI GCGC 1 cut(s) 354
GluI GCNGC 9 cut(s) 63, 84, 245, 248, 327, 330, 351, 612, 633
HaeII RGCGCY 1 cut(s) 356
HaeIII GGCC 5 cut(s) 5, 432, 555, 877, 953
HapII CCGG 2 cut(s) 556, 986
HgaI GACGC 1 cut(s) 163
HhaI GCGC 1 cut(s) 355
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 4 cut(s) 338, 631, 970, 1111
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HinfI GANTC 4 cut(s) 140, 903, 959, 1043
HpaII CCGG 2 cut(s) 556, 986
HphI GGTGA 4 cut(s) 6, 121, 169, 1117
Hpy166II GTNNAC 1 cut(s) 1002
Hpy188I TCNGA 2 cut(s) 21, 566
Hpy188III TCNNGA 6 cut(s) 303, 371, 438, 797, 845, 1010
Hpy8I GTNNAC 1 cut(s) 1002
HpyAV CCTTC 3 cut(s) 239, 422, 459
HpyCH4III ACNGT 2 cut(s) 839, 1129
HpyCH4IV ACGT 1 cut(s) 750
HpyF10VI GCNNNNNNNGC 5 cut(s) 83, 335, 617, 893, 991
HpyF3I CTNAG 4 cut(s) 18, 346, 677, 996
HpySE526I ACGT 1 cut(s) 750
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 4 cut(s) 338, 631, 970, 1111
HspAI GCGC 1 cut(s) 353
Ksp22I TGATCA 1 cut(s) 793
Kzo9I GATC 5 cut(s) 202, 217, 455, 673, 793
LguI GCTCTTC 1 cut(s) 464
LmnI GCTCC 1 cut(s) 305
Lsp1109I GCAGC 9 cut(s) 49, 95, 231, 234, 313, 341, 362, 598, 644
LweI GCATC 2 cut(s) 195, 1060
MaeI CTAG 5 cut(s) 516, 584, 812, 899, 1132
MaeII ACGT 1 cut(s) 750
MaeIII GTNAC 5 cut(s) 100, 175, 268, 661, 683
MalI GATC 5 cut(s) 204, 219, 457, 675, 795
MboI GATC 5 cut(s) 202, 217, 455, 673, 793
MboII GAAGA 7 cut(s) 332, 481, 546, 553, 617, 811, 860
MfeI CAATTG 1 cut(s) 866
MflI RGATCY 1 cut(s) 455
MhlI GDGCHC 2 cut(s) 1004, 1089
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 193, 294, 549, 761, 866
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 134, 897, 953
MmeI TCCRAC 1 cut(s) 748
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 283
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 69, 192, 293, 357, 384
MslI CAYNNNNRTG 3 cut(s) 107, 339, 528
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 356
MspI CCGG 2 cut(s) 556, 986
MspR9I CCNGG 2 cut(s) 121, 557
MunI CAATTG 1 cut(s) 866
MvaI CCWGG 1 cut(s) 121
MwoI GCNNNNNNNGC 5 cut(s) 83, 335, 617, 893, 991
NciI CCSGG 1 cut(s) 557
NdeI CATATG 2 cut(s) 310, 592
NdeII GATC 5 cut(s) 202, 217, 455, 673, 793
NlaIII CATG 4 cut(s) 338, 631, 970, 1111
NlaIV GGNNCC 1 cut(s) 457
NmeAIII GCCGAG 1 cut(s) 853
NmuCI GTSAC 2 cut(s) 100, 175
NsiI ATGCAT 1 cut(s) 283
NspI RCATGY 1 cut(s) 338
OliI CACNNNNGTG 1 cut(s) 107
PciSI GCTCTTC 1 cut(s) 464
PfeI GAWTC 1 cut(s) 1043
PflFI GACNNNGTC 1 cut(s) 973
PkrI GCNGC 9 cut(s) 64, 85, 246, 249, 328, 331, 352, 613, 634
PleI GAGTC 3 cut(s) 134, 897, 953
PpsI GAGTC 3 cut(s) 134, 897, 953
PshBI ATTAAT 2 cut(s) 192, 293
Psp124BI GAGCTC 1 cut(s) 1089
Psp1406I AACGTT 1 cut(s) 750
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 457
PspPI GGNCC 1 cut(s) 710
PstI CTGCAG 2 cut(s) 100, 331
PsuI RGATCY 1 cut(s) 455
PsyI GACNNNGTC 1 cut(s) 973
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
RseI CAYNNNNRTG 3 cut(s) 107, 339, 528
SacI GAGCTC 1 cut(s) 1089
SapI GCTCTTC 1 cut(s) 464
SaqAI TTAA 5 cut(s) 69, 192, 293, 357, 384
SatI GCNGC 9 cut(s) 63, 84, 245, 248, 327, 330, 351, 612, 633
Sau3AI GATC 5 cut(s) 202, 217, 455, 673, 793
Sau96I GGNCC 1 cut(s) 710
ScaI AGTACT 1 cut(s) 362
SchI GAGTC 3 cut(s) 134, 897, 953
ScrFI CCNGG 2 cut(s) 121, 557
SduI GDGCHC 2 cut(s) 1004, 1089
SfaNI GCATC 2 cut(s) 195, 1060
SfcI CTRYAG 3 cut(s) 96, 327, 636
SinI GGWCC 1 cut(s) 710
SmiMI CAYNNNNRTG 3 cut(s) 107, 339, 528
SmlI CTYRAG 2 cut(s) 356, 460
SmoI CTYRAG 2 cut(s) 356, 460
Sse9I AATT 5 cut(s) 193, 294, 549, 761, 866
SspMI CTAG 5 cut(s) 516, 584, 812, 899, 1132
SstI GAGCTC 1 cut(s) 1089
StyD4I CCNGG 2 cut(s) 119, 555
StyI CCWWGG 2 cut(s) 134, 898
TaaI ACNGT 2 cut(s) 839, 1129
TaiI ACGT 1 cut(s) 753
TaqI TCGA 4 cut(s) 169, 201, 547, 1032
TasI AATT 5 cut(s) 193, 294, 549, 761, 866
TatI WGTACW 1 cut(s) 360
TfiI GAWTC 1 cut(s) 1043
Tru1I TTAA 5 cut(s) 69, 192, 293, 357, 384
Tru9I TTAA 5 cut(s) 69, 192, 293, 357, 384
TscAI CASTG 4 cut(s) 481, 889, 1004, 1087
TseFI GTSAC 2 cut(s) 100, 175
TseI GCWGC 9 cut(s) 62, 83, 244, 247, 326, 329, 350, 611, 632
Tsp45I GTSAC 2 cut(s) 100, 175
TspDTI ATGAA 2 cut(s) 333, 431
TspGWI ACGGA 1 cut(s) 381
TspRI CASTG 4 cut(s) 481, 889, 1004, 1087
Tth111I GACNNNGTC 1 cut(s) 973
Vha464I CTTAAG 1 cut(s) 356
VneI GTGCAC 1 cut(s) 1000
VpaK11BI GGWCC 1 cut(s) 710
VspI ATTAAT 2 cut(s) 192, 293
XagI CCTNNNNNAGG 1 cut(s) 463
XceI RCATGY 1 cut(s) 338
XmaJI CCTAGG 1 cut(s) 898
XspI CTAG 5 cut(s) 516, 584, 812, 899, 1132
ZrmI AGTACT 1 cut(s) 362
Zsp2I ATGCAT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.