Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002197

Physical Location & Seq

Genomic Coordinates Forward (+)

27479377 .. 27482380

Gene Structure 3004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1226700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCGAAAACCTCACAGCAAAACCAGAAGAATACTGCTGGAAGCACTAACAGGAGCAGCAGCACCACTAGCACTGTTACAACAACAAAAGTCAAGCGGACGCGGAAAAGCGTCCGCCGTGACTCTCCGCCCCAGCGGAGCTCCATATATCGTGGCGTCACGAGGCATCGATGGACGGGTCGATACGAAGCTCATCTGTGGGATAAGAATTGCTGGAATGAGTCGCAGAACAAGAAAGGAAGACAAGGGGCATATGATGATGAAGAAGCTGCTGCACGTGCTTATGACTTGGCAGCATTAAAGTACTGGGGACGAGATACAATTCTCAATTTCCCAGTATCCACATATGAAGAAGAGCTCAAAGAAATGGAGAGCCAGTCGAAAGAAGAATACATTGGATCATTGAGAAGGAAAAGTAGTGGATTTTCTCGCGGTGTTTCGAAGTATAGAGGCGTAGCAAGACACCATCATAATGGAAGATGGGAAGCTCGAATAGGCAGAGTATTTGGAAACAAATACCTTTACCTTGGAACCTTCGCTACACAAGAAGAAGCAGCCACAGCATATGACATGGCAGCAATAGAGTACCGTGGACTTAATGCCGTTACAAACTTTGATCTTAGCCGCTACATCAAGTCTCTGTGCCCAAATAATACAAACGGGCCTAACGGCGATCAACAAAACCCTGACGGTGACCTCCATGTAATGCAAAACCCTGATGGCGTCCTCAACCAAATGCACAACCCTAATTGTAAACCAGAACTGGAGATCATGCCTGACCACACTAGTTCGAGTAGCGTTAGCGATTCTTCGGTTGTTTTGCCGCGGATGGGAAATGGTTCTTCAGCGTCATCTGCACTAGGACTCTTGCTACAATCTCCCAAGTTTAAAGAAATGCTTGAGAGATCCTCTGTTAAGGAATGCTCACCGACACTTTCGGAGCCAGAGATACGTCGACGCATTTTTCCTGATGACATTCAAACGTATTTTGATTGCCAAGACTTGAACAGCATTGCGGAAGGAGATGACATTATTTTTGGTGAGTTACAGCCGTTTGCTTCGCCTGTTTTTCACTGTGAACTTGATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010033 GO:0010035 GO:0010187 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0040008 GO:0042221 GO:0042304 GO:0045723 GO:0045834 GO:0045923 GO:0046889 GO:0046890 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1900140 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

364

Amino Acids

40.89

Weight (kDa)

7.64

Isoelectric Point (pI)

58.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	50 - 104	4.2e-07	AP2 domain
AP2	PF00847	147 - 198	2.6e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G79700 AT1G79700 AT1G79700 AT1G79700
fragaria_vesca	FvH4_4g08800 FvH4_6g28200 FvH4_6g28200 FvH4_6g28200
malus_domestica	MD09G1228500.v1.1 MD16G1258700.v1.1 MD17G1226700.v1.1
prunus_persica	Prupe.1G101600_v2.0.a1 Prupe.3G104100_v2.0.a1
pyrus_communis	pycom09g14740 pycom17g23010
rosa_chinensis	RchiOBHm_Chr2g0132251 RchiOBHm_Chr4g0405371
rosa_laevigata	RLG00000008847 RLG00000019240
rosa_multiflora	Rmu_sc0006313.1_g000002 Rmu_sc0011487.1_g000002
rosa_roxburghii	Rroxscaffold_2G00112250 Rroxscaffold_5G00349830
rosa_rugosa	Rorug02G0303000 Rorug02G0303000 Rorug04G0057800
rosa_samantha	Rh2AG356200 Rh2BG362600 Rh2CG339700 Rh2DG379500 Rh4AG131300 Rh4BG125900 Rh4CG138400 Rh4DG125400
rosa_wichuraiana	Rw2G028940 Rw4G010640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	955
AccII	CGCG	3 cut(s)	103, 432, 826
AclWI	GGATC	2 cut(s)	406, 900
AcuI	CTGAAG	1 cut(s)	828
AcvI	CACGTG	1 cut(s)	278
AcyI	GRCGYC	2 cut(s)	156, 723
AfaI	GTAC	2 cut(s)	305, 587
AfiI	CCNNNNNNNGG	1 cut(s)	830
AgsI	TTSAA	2 cut(s)	980, 1006
AhlI	ACTAGT	1 cut(s)	785
AjuI	GAANNNNNNNTTGG	2 cut(s)	378, 410
AluBI	AGCT	5 cut(s)	141, 191, 269, 358, 488
AluI	AGCT	5 cut(s)	141, 191, 269, 358, 488
Alw21I	GWGCWC	2 cut(s)	143, 360
Alw26I	GTCTC	1 cut(s)	642
AlwI	GGATC	2 cut(s)	406, 900
AoxI	GGCC	1 cut(s)	662
ApeKI	GCWGC	7 cut(s)	57, 60, 269, 272, 293, 554, 575
ArsI	GACNNNNNNTTYG	2 cut(s)	1019, 1051
Asp700I	GAANNNNTTC	1 cut(s)	838
AspS9I	GGNCC	1 cut(s)	662
AsuHPI	GGTGA	3 cut(s)	704, 918, 1052
AsuII	TTCGAA	1 cut(s)	440
BaeGI	GKGCMC	1 cut(s)	647
BanII	GRGCYC	2 cut(s)	143, 360
BauI	CACGAG	1 cut(s)	160
BbrPI	CACGTG	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	247
Bbv12I	GWGCWC	2 cut(s)	143, 360
BbvI	GCAGC	7 cut(s)	69, 72, 256, 259, 305, 566, 587
BccI	CCATC	5 cut(s)	165, 474, 474, 713, 823
BceAI	ACGGC	4 cut(s)	102, 587, 685, 1036
BciVI	GTATCC	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	642
BcuI	ACTAGT	1 cut(s)	785
BfaI	CTAG	3 cut(s)	69, 786, 860
BfuI	GTATCC	1 cut(s)	349
BisI	GCNGC	9 cut(s)	58, 61, 270, 273, 294, 555, 576, 625, 824
BlsI	GCNGC	9 cut(s)	59, 62, 271, 274, 295, 556, 577, 626, 825
BmcAI	AGTACT	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	662
BmiI	GGNNCC	2 cut(s)	532, 942
BmrI	ACTGGG	2 cut(s)	316, 329
BmsI	GCATC	2 cut(s)	175, 1075
BmuI	ACTGGG	2 cut(s)	316, 329
BpiI	GAAGAC	1 cut(s)	247
BplI	GAGNNNNNCTC	2 cut(s)	893, 925
BpmI	CTGGAG	1 cut(s)	785
Bpu14I	TTCGAA	1 cut(s)	440
BpuEI	CTTGAG	1 cut(s)	920
Bsa29I	ATCGAT	1 cut(s)	169
BsaAI	YACGTR	1 cut(s)	278
BsaHI	GRCGYC	2 cut(s)	156, 723
BsaJI	CCNNGG	3 cut(s)	526, 589, 824
BsaXI	ACNNNNNCTCC	2 cut(s)	362, 392
Bsc4I	CCNNNNNNNGG	1 cut(s)	830
Bse1I	ACTGG	4 cut(s)	311, 335, 376, 768
Bse3DI	GCAATG	1 cut(s)	1011
BseCI	ATCGAT	1 cut(s)	169
BseDI	CCNNGG	3 cut(s)	526, 589, 824
BseGI	GGATG	1 cut(s)	834
BseLI	CCNNNNNNNGG	1 cut(s)	830
BseMI	GCAATG	1 cut(s)	1011
BseNI	ACTGG	4 cut(s)	311, 335, 376, 768
BseSI	GKGCMC	1 cut(s)	647
BseXI	GCAGC	7 cut(s)	69, 72, 256, 259, 305, 566, 587
BseYI	CCCAGC	1 cut(s)	132
BsgI	GTGCAG	2 cut(s)	258, 840
Bsh1236I	CGCG	3 cut(s)	103, 432, 826
BshFI	GGCC	1 cut(s)	664
BshVI	ATCGAT	1 cut(s)	169
BsiHKAI	GWGCWC	2 cut(s)	143, 360
BslFI	GGGAC	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	830
BsmAI	GTCTC	1 cut(s)	642
BsmFI	GGGAC	1 cut(s)	324
BsmI	GAATGC	1 cut(s)	926
BsnI	GGCC	1 cut(s)	664
Bsp119I	TTCGAA	1 cut(s)	440
Bsp1286I	GDGCHC	3 cut(s)	143, 360, 647
Bsp143I	GATC	5 cut(s)	398, 616, 673, 768, 905
BspANI	GGCC	1 cut(s)	664
BspDI	ATCGAT	1 cut(s)	169
BspFNI	CGCG	3 cut(s)	103, 432, 826
BspLI	GGNNCC	2 cut(s)	532, 942
BspPI	GGATC	2 cut(s)	406, 900
BspQI	GCTCTTC	1 cut(s)	348
BspT104I	TTCGAA	1 cut(s)	440
BsrDI	GCAATG	1 cut(s)	1011
BsrI	ACTGG	4 cut(s)	311, 335, 376, 768
BssECI	CCNNGG	3 cut(s)	526, 589, 824
BssMI	GATC	5 cut(s)	398, 616, 673, 768, 905
BssNI	GRCGYC	2 cut(s)	156, 723
BssSI	CACGAG	1 cut(s)	160
BssT1I	CCWWGG	1 cut(s)	526
Bst2BI	CACGAG	1 cut(s)	160
Bst4CI	ACNGT	4 cut(s)	76, 590, 692, 1076
Bst6I	CTCTTC	1 cut(s)	348
BstACI	GRCGYC	2 cut(s)	156, 723
BstBAI	YACGTR	1 cut(s)	278
BstBI	TTCGAA	1 cut(s)	440
BstDEI	CTNAG	1 cut(s)	620
BstDSI	CCRYGG	2 cut(s)	589, 824
BstEII	GGTNACC	1 cut(s)	692
BstF5I	GGATG	1 cut(s)	834
BstFNI	CGCG	3 cut(s)	103, 432, 826
BstKTI	GATC	5 cut(s)	401, 619, 676, 771, 908
BstMAI	GTCTC	1 cut(s)	642
BstMBI	GATC	5 cut(s)	398, 616, 673, 768, 905
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 278, 560, 854
BstPI	GGTNACC	1 cut(s)	692
BstSLI	GKGCMC	1 cut(s)	647
BstUI	CGCG	3 cut(s)	103, 432, 826
BstV1I	GCAGC	7 cut(s)	69, 72, 256, 259, 305, 566, 587
BstV2I	GAAGAC	1 cut(s)	247
BstX2I	RGATCY	1 cut(s)	905
BstXI	CCANNNNNNTGG	1 cut(s)	473
BstYI	RGATCY	1 cut(s)	905
Bsu15I	ATCGAT	1 cut(s)	169
BsuI	GTATCC	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	664
BsuTUI	ATCGAT	1 cut(s)	169
BtgI	CCRYGG	2 cut(s)	589, 824
BtsCI	GGATG	1 cut(s)	834
BtsIMutI	CAGTG	2 cut(s)	72, 1072
Cfr13I	GGNCC	1 cut(s)	662
Cfr42I	CCGCGG	1 cut(s)	827
ClaI	ATCGAT	1 cut(s)	169
CseI	GACGC	6 cut(s)	100, 109, 145, 712, 837, 966
Csp6I	GTAC	2 cut(s)	304, 586
CviAII	CATG	3 cut(s)	571, 701, 772
CviQI	GTAC	2 cut(s)	304, 586
DdeI	CTNAG	1 cut(s)	620
DpnI	GATC	5 cut(s)	400, 618, 675, 770, 907
DpnII	GATC	5 cut(s)	398, 616, 673, 768, 905
DraI	TTTAAA	1 cut(s)	889
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
EciI	GGCGGA	2 cut(s)	104, 117
Ecl136II	GAGCTC	2 cut(s)	141, 358
Eco130I	CCWWGG	1 cut(s)	526
Eco24I	GRGCYC	2 cut(s)	143, 360
Eco53kI	GAGCTC	2 cut(s)	141, 358
Eco57I	CTGAAG	1 cut(s)	828
Eco72I	CACGTG	1 cut(s)	278
Eco91I	GGTNACC	1 cut(s)	692
EcoICRI	GAGCTC	2 cut(s)	141, 358
EcoO65I	GGTNACC	1 cut(s)	692
EcoT14I	CCWWGG	1 cut(s)	526
EcoT22I	ATGCAT	1 cut(s)	1090
EcoT38I	GRGCYC	2 cut(s)	143, 360
ErhI	CCWWGG	1 cut(s)	526
FaeI	CATG	3 cut(s)	574, 704, 775
FalI	AAGNNNNNCTT	2 cut(s)	882, 914
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	3 cut(s)	570, 700, 771
FauNDI	CATATG	3 cut(s)	253, 346, 565
FblI	GTMKAC	1 cut(s)	955
Fnu4HI	GCNGC	9 cut(s)	58, 61, 270, 273, 294, 555, 576, 625, 824
FokI	GGATG	1 cut(s)	841
FriOI	GRGCYC	2 cut(s)	143, 360
Fsp4HI	GCNGC	9 cut(s)	58, 61, 270, 273, 294, 555, 576, 625, 824
FspBI	CTAG	3 cut(s)	69, 786, 860
GluI	GCNGC	9 cut(s)	58, 61, 270, 273, 294, 555, 576, 625, 824
GsaI	CCCAGC	1 cut(s)	136
GsuI	CTGGAG	1 cut(s)	785
HaeIII	GGCC	1 cut(s)	664
HgaI	GACGC	6 cut(s)	100, 109, 145, 712, 837, 966
Hin1I	GRCGYC	2 cut(s)	156, 723
Hin1II	CATG	3 cut(s)	574, 704, 775
HincII	GTYRAC	1 cut(s)	956
HindII	GTYRAC	1 cut(s)	956
HinfI	GANTC	4 cut(s)	122, 221, 806, 864
HphI	GGTGA	3 cut(s)	704, 918, 1052
Hpy166II	GTNNAC	4 cut(s)	593, 755, 956, 1079
Hpy188I	TCNGA	1 cut(s)	940
Hpy188III	TCNNGA	2 cut(s)	160, 968
Hpy8I	GTNNAC	4 cut(s)	593, 755, 956, 1079
Hpy99I	CGWCG	2 cut(s)	957, 960
HpyAV	CCTTC	3 cut(s)	402, 544, 1013
HpyCH4III	ACNGT	4 cut(s)	76, 590, 692, 1076
HpyCH4IV	ACGT	3 cut(s)	277, 952, 983
HpyCH4V	TGCA	5 cut(s)	275, 709, 739, 857, 1088
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 278, 560, 854
HpyF3I	CTNAG	1 cut(s)	620
HpySE526I	ACGT	3 cut(s)	277, 952, 983
Hsp92I	GRCGYC	2 cut(s)	156, 723
Hsp92II	CATG	3 cut(s)	574, 704, 775
KspI	CCGCGG	1 cut(s)	827
Kzo9I	GATC	5 cut(s)	398, 616, 673, 768, 905
LguI	GCTCTTC	1 cut(s)	348
LmnI	GCTCC	4 cut(s)	54, 138, 146, 940
Lsp1109I	GCAGC	7 cut(s)	69, 72, 256, 259, 305, 566, 587
LweI	GCATC	2 cut(s)	175, 1075
MaeI	CTAG	3 cut(s)	69, 786, 860
MaeII	ACGT	3 cut(s)	277, 952, 983
MaeIII	GTNAC	6 cut(s)	76, 119, 157, 604, 692, 1044
MalI	GATC	5 cut(s)	400, 618, 675, 770, 907
MboI	GATC	5 cut(s)	398, 616, 673, 768, 905
MflI	RGATCY	1 cut(s)	905
MhlI	GDGCHC	3 cut(s)	143, 360, 647
MluCI	AATT	4 cut(s)	208, 321, 328, 748
MlyI	GAGTC	3 cut(s)	116, 230, 858
MnlI	CCTC	6 cut(s)	22, 156, 443, 707, 737, 919
Mph1103I	ATGCAT	1 cut(s)	1090
MroXI	GAANNNNTTC	1 cut(s)	838
MseI	TTAA	4 cut(s)	299, 597, 888, 915
MslI	CAYNNNNRTG	1 cut(s)	471
MspA1I	CMGCKG	2 cut(s)	136, 826
Mva1269I	GAATGC	1 cut(s)	926
MvnI	CGCG	3 cut(s)	103, 432, 826
MwoI	GCNNNNNNNGC	4 cut(s)	69, 278, 560, 854
NdeI	CATATG	3 cut(s)	253, 346, 565
NdeII	GATC	5 cut(s)	398, 616, 673, 768, 905
NlaIII	CATG	3 cut(s)	574, 704, 775
NlaIV	GGNNCC	2 cut(s)	532, 942
NmuCI	GTSAC	3 cut(s)	119, 157, 692
NsiI	ATGCAT	1 cut(s)	1090
NspV	TTCGAA	1 cut(s)	440
PciSI	GCTCTTC	1 cut(s)	348
PctI	GAATGC	1 cut(s)	926
PdmI	GAANNNNTTC	1 cut(s)	838
PfeI	GAWTC	1 cut(s)	806
PkrI	GCNGC	9 cut(s)	59, 62, 271, 274, 295, 556, 577, 626, 825
PleI	GAGTC	3 cut(s)	116, 229, 858
PmaCI	CACGTG	1 cut(s)	278
PmlI	CACGTG	1 cut(s)	278
PpsI	GAGTC	3 cut(s)	116, 229, 858
Ppu21I	YACGTR	1 cut(s)	278
Psp124BI	GAGCTC	2 cut(s)	143, 360
PspCI	CACGTG	1 cut(s)	278
PspEI	GGTNACC	1 cut(s)	692
PspFI	CCCAGC	1 cut(s)	132
PspN4I	GGNNCC	2 cut(s)	532, 942
PspPI	GGNCC	1 cut(s)	662
PsrI	GAACNNNNNNTAC	2 cut(s)	523, 555
PsuI	RGATCY	1 cut(s)	905
RsaI	GTAC	2 cut(s)	305, 587
RsaNI	GTAC	2 cut(s)	304, 586
RseI	CAYNNNNRTG	1 cut(s)	471
SacI	GAGCTC	2 cut(s)	143, 360
SacII	CCGCGG	1 cut(s)	827
SalI	GTCGAC	1 cut(s)	954
SapI	GCTCTTC	1 cut(s)	348
SaqAI	TTAA	4 cut(s)	299, 597, 888, 915
SatI	GCNGC	9 cut(s)	58, 61, 270, 273, 294, 555, 576, 625, 824
Sau3AI	GATC	5 cut(s)	398, 616, 673, 768, 905
Sau96I	GGNCC	1 cut(s)	662
ScaI	AGTACT	1 cut(s)	305
SchI	GAGTC	3 cut(s)	116, 230, 858
SduI	GDGCHC	3 cut(s)	143, 360, 647
SfaNI	GCATC	2 cut(s)	175, 1075
Sfr303I	CCGCGG	1 cut(s)	827
SfuI	TTCGAA	1 cut(s)	440
SgrBI	CCGCGG	1 cut(s)	827
SgrDI	CGTCGACG	1 cut(s)	954
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	1 cut(s)	899
SmoI	CTYRAG	1 cut(s)	899
SpeI	ACTAGT	1 cut(s)	785
Sse9I	AATT	4 cut(s)	208, 321, 328, 748
SspMI	CTAG	3 cut(s)	69, 786, 860
SstI	GAGCTC	2 cut(s)	143, 360
StyI	CCWWGG	1 cut(s)	526
TaaI	ACNGT	4 cut(s)	76, 590, 692, 1076
TaiI	ACGT	3 cut(s)	280, 955, 986
TaqI	TCGA	7 cut(s)	169, 181, 380, 440, 490, 791, 955
TasI	AATT	4 cut(s)	208, 321, 328, 748
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	2 cut(s)	627, 826
TfiI	GAWTC	1 cut(s)	806
Tru1I	TTAA	4 cut(s)	299, 597, 888, 915
Tru9I	TTAA	4 cut(s)	299, 597, 888, 915
TscAI	CASTG	2 cut(s)	79, 1079
TseFI	GTSAC	3 cut(s)	119, 157, 692
TseI	GCWGC	7 cut(s)	57, 60, 269, 272, 293, 554, 575
Tsp45I	GTSAC	3 cut(s)	119, 157, 692
TspDTI	ATGAA	2 cut(s)	276, 363
TspRI	CASTG	2 cut(s)	79, 1079
XmiI	GTMKAC	1 cut(s)	955
XmnI	GAANNNNTTC	1 cut(s)	838
XspI	CTAG	3 cut(s)	69, 786, 860
ZrmI	AGTACT	1 cut(s)	305
Zsp2I	ATGCAT	1 cut(s)	1090

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.