RLG00000019240

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
48851987 .. 48854410
2424 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019240

Sequence Viewer

Length: 1077 bp
ATGGCGAAAACCTCACAGAAGATCCAAAAGAATACAACTCCAAGCTCTAGCAATAATAGCAACACCACCACTAGTACCACTACTAGTAGTCCTCCGGCCACCAAGGTCAAGCGGACGCGTAAAAGTGTACGCCGCGACTCTCCGCCTCAGCGGAGCTCCATCTACAGAGGAGTCACAAGGCATCGATGGACGGGTCGGTATGAAGCTCATTTGTGGGATAAGAACTGTTGGAATGAGTCACAGAACAAGAAAGGAAGACAAGGGGCATATGATGATGAAGAAGCTGCAGCACGTGCCTATGACTTGGCAGCATTAAAGTACTGGGGACAAGATACAATCCTCAATTTGCCAGTTTCCACCTATGAGGAAGAGCTCAAAGAAATGGACGGTCAGTCTAAAGAAGAATACATTGGATCATTGAGGAGAAAGAGTAGTGGATTTTCTCGTGGCATTTCAAAATATAGAGGCGTAGCGAGACACCACCATAATGGAAGATGGGAGGCTCGAATTGGAAGAGTATTTGGAAACAAATATCTCTACCTTGGAACCTATGCGACGCAAGAAGAAGCAGCTACAGCTTACGACATGGCAGCAATAGAGTATCGTGGACTTAATGCCGTAACGAACTTCGATCTTAGCCGTTACATCAAGTCACTGTGCCCCAATAATGAGAACGTTCCCAACAACACGCAATCAAACCCTAATGCTGACCTCAGTTCGATTCAAAACCCTGATCCTAAGGTAGGATTAGGGTTTATGCCCCACAACCCGAGTCCGAGCACTAGCGAGTCAATGGTAGCAGTGCCACGGCCGGAAAATGGTTCCTCGGCGTCATCTGCACTAGGGCTTTTATTGCAGTCCCCTAAGTTCAAGGAAATGCTCGAGAGGACGTCAGTGGCAGACTGCTCGTCGACGACGACTTCAGAGCCAAACATGCCTCGCCGGAGTTTCCCCGATGACATTCAAACGTACTTTGATTGCCAAGATTTGAATAGCTATGCAGAAGGAGACGACATTATTTTCGGGGAGTTAAACTCATTTGCTTCACCTGTTTTTCATTGTGAACTTGATGCCTGA

Protein Analysis

359

Amino Acids

40.02

Weight (kDa)

8.15

Isoelectric Point (pI)

58.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 55 - 109 2.7e-07 AP2 domain
AP2 PF00847 152 - 203 2e-11 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 893
AccI GTMKAC 1 cut(s) 911
AccII CGCG 2 cut(s) 118, 135
AciI CCGC 4 cut(s) 112, 133, 143, 151
AclI AACGTT 1 cut(s) 675
AclWI GGATC 3 cut(s) 16, 421, 728
AcoI YGGCCR 2 cut(s) 96, 809
AcuI CTGAAG 1 cut(s) 906
AcvI CACGTG 1 cut(s) 293
AcyI GRCGYC 2 cut(s) 830, 890
AfaI GTAC 4 cut(s) 76, 129, 320, 971
AfiI CCNNNNNNNGG 2 cut(s) 743, 818
AflIII ACRYGT 1 cut(s) 116
AgsI TTSAA 5 cut(s) 456, 725, 871, 965, 991
AhdI GACNNNNNGTC 2 cut(s) 391, 907
AhlI ACTAGT 2 cut(s) 71, 83
AjuI GAANNNNNNNTTGG 2 cut(s) 393, 425
AluBI AGCT 8 cut(s) 45, 156, 206, 284, 373, 572, 578, 996
AluI AGCT 8 cut(s) 45, 156, 206, 284, 373, 572, 578, 996
Alw21I GWGCWC 3 cut(s) 158, 375, 782
Alw26I GTCTC 2 cut(s) 469, 1002
AlwI GGATC 3 cut(s) 16, 421, 728
Ama87I CYCGRG 2 cut(s) 769, 881
AoxI GGCC 2 cut(s) 96, 809
ApeKI GCWGC 5 cut(s) 284, 287, 308, 569, 590
ArsI GACNNNNNNTTYG 2 cut(s) 1004, 1036
AsuHPI GGTGA 1 cut(s) 1038
AvaI CYCGRG 2 cut(s) 769, 881
AxyI CCTNAGG 1 cut(s) 738
BaeGI GKGCMC 1 cut(s) 662
BanII GRGCYC 2 cut(s) 158, 375
BauI CACGAG 1 cut(s) 444
BbrPI CACGTG 1 cut(s) 293
BbsI GAAGAC 1 cut(s) 262
Bbv12I GWGCWC 3 cut(s) 158, 375, 782
BbvCI CCTCAGC 1 cut(s) 147
BbvI GCAGC 5 cut(s) 271, 299, 320, 581, 602
BccI CCATC 3 cut(s) 167, 180, 489
BceAI ACGGC 3 cut(s) 602, 624, 824
BcgI CGANNNNNNTGC 2 cut(s) 888, 922
BcoDI GTCTC 2 cut(s) 469, 1002
BcuI ACTAGT 2 cut(s) 71, 83
BfaI CTAG 5 cut(s) 48, 72, 84, 783, 842
BfmI CTRYAG 3 cut(s) 163, 285, 573
BisI GCNGC 6 cut(s) 133, 285, 288, 309, 570, 591
BlsI GCNGC 6 cut(s) 134, 286, 289, 310, 571, 592
BmcAI AGTACT 1 cut(s) 320
BmeRI GACNNNNNGTC 2 cut(s) 391, 907
BmeT110I CYCGRG 2 cut(s) 769, 881
BmiI GGNNCC 2 cut(s) 547, 823
BmrI ACTGGG 1 cut(s) 331
BmsI GCATC 2 cut(s) 190, 1060
BmuI ACTGGG 1 cut(s) 331
BpiI GAAGAC 1 cut(s) 262
BplI GAGNNNNNCTC 2 cut(s) 1019, 1051
Bpu10I CCTNAGC 1 cut(s) 147
Bsa29I ATCGAT 1 cut(s) 184
BsaAI YACGTR 1 cut(s) 293
BsaHI GRCGYC 2 cut(s) 830, 890
BsaJI CCNNGG 4 cut(s) 102, 541, 806, 825
BsaXI ACNNNNNCTCC 2 cut(s) 415, 445
Bsc4I CCNNNNNNNGG 2 cut(s) 743, 818
Bse1I ACTGG 2 cut(s) 326, 350
Bse21I CCTNAGG 1 cut(s) 738
BseCI ATCGAT 1 cut(s) 184
BseDI CCNNGG 4 cut(s) 102, 541, 806, 825
BseLI CCNNNNNNNGG 2 cut(s) 743, 818
BseMII CTCAG 2 cut(s) 161, 727
BseNI ACTGG 2 cut(s) 326, 350
BseRI GAGGAG 2 cut(s) 183, 436
BseSI GKGCMC 1 cut(s) 662
BseX3I CGGCCG 1 cut(s) 809
BseXI GCAGC 5 cut(s) 271, 299, 320, 581, 602
BsgI GTGCAG 1 cut(s) 822
Bsh1236I CGCG 2 cut(s) 118, 135
Bsh1285I CGRYCG 1 cut(s) 812
BshFI GGCC 2 cut(s) 98, 811
BshVI ATCGAT 1 cut(s) 184
BsiEI CGRYCG 1 cut(s) 812
BsiHKAI GWGCWC 3 cut(s) 158, 375, 782
BsiHKCI CYCGRG 2 cut(s) 769, 881
BsiSI CCGG 3 cut(s) 95, 812, 943
BslFI GGGAC 2 cut(s) 339, 844
BslI CCNNNNNNNGG 2 cut(s) 743, 818
BsmAI GTCTC 2 cut(s) 469, 1002
BsmBI CGTCTC 1 cut(s) 1002
BsmFI GGGAC 2 cut(s) 339, 844
BsnI GGCC 2 cut(s) 98, 811
BsoBI CYCGRG 2 cut(s) 769, 881
Bsp1286I GDGCHC 4 cut(s) 158, 375, 662, 782
Bsp143I GATC 4 cut(s) 21, 413, 631, 733
BspACI CCGC 4 cut(s) 112, 133, 143, 151
BspANI GGCC 2 cut(s) 98, 811
BspCNI CTCAG 2 cut(s) 160, 726
BspDI ATCGAT 1 cut(s) 184
BspFNI CGCG 2 cut(s) 118, 135
BspLI GGNNCC 2 cut(s) 547, 823
BspMAI CTGCAG 1 cut(s) 289
BspPI GGATC 3 cut(s) 16, 421, 728
BspQI GCTCTTC 1 cut(s) 363
BsrI ACTGG 2 cut(s) 326, 350
BssECI CCNNGG 4 cut(s) 102, 541, 806, 825
BssMI GATC 4 cut(s) 21, 413, 631, 733
BssNI GRCGYC 2 cut(s) 830, 890
BssSI CACGAG 1 cut(s) 444
BssT1I CCWWGG 2 cut(s) 102, 541
Bst2BI CACGAG 1 cut(s) 444
Bst4CI ACNGT 3 cut(s) 227, 389, 657
Bst6I CTCTTC 2 cut(s) 363, 508
BstACI GRCGYC 2 cut(s) 830, 890
BstAPI GCANNNNNTGC 1 cut(s) 293
BstBAI YACGTR 1 cut(s) 293
BstDEI CTNAG 5 cut(s) 147, 635, 713, 738, 864
BstDSI CCRYGG 1 cut(s) 806
BstENI CCTNNNNNAGG 1 cut(s) 741
BstFNI CGCG 2 cut(s) 118, 135
BstKTI GATC 4 cut(s) 24, 416, 634, 736
BstMAI GTCTC 2 cut(s) 469, 1002
BstMBI GATC 4 cut(s) 21, 413, 631, 733
BstMCI CGRYCG 1 cut(s) 812
BstMWI GCNNNNNNNGC 6 cut(s) 57, 293, 575, 836, 853, 934
BstNSI RCATGY 1 cut(s) 937
BstSFI CTRYAG 3 cut(s) 163, 285, 573
BstSLI GKGCMC 1 cut(s) 662
BstUI CGCG 2 cut(s) 118, 135
BstV1I GCAGC 5 cut(s) 271, 299, 320, 581, 602
BstV2I GAAGAC 1 cut(s) 262
BstX2I RGATCY 1 cut(s) 21
BstXI CCANNNNNNTGG 1 cut(s) 488
BstYI RGATCY 1 cut(s) 21
BstZI CGGCCG 1 cut(s) 809
Bsu15I ATCGAT 1 cut(s) 184
Bsu36I CCTNAGG 1 cut(s) 738
BsuRI GGCC 2 cut(s) 98, 811
BsuTUI ATCGAT 1 cut(s) 184
BtgI CCRYGG 1 cut(s) 806
BtsI GCAGTG 1 cut(s) 807
BtsIMutI CAGTG 3 cut(s) 653, 807, 900
ClaI ATCGAT 1 cut(s) 184
CseI GACGC 3 cut(s) 124, 565, 819
Csp6I GTAC 4 cut(s) 75, 128, 319, 970
CviAII CATG 2 cut(s) 586, 934
CviQI GTAC 4 cut(s) 75, 128, 319, 970
DdeI CTNAG 5 cut(s) 147, 635, 713, 738, 864
DpnI GATC 4 cut(s) 23, 415, 633, 735
DpnII GATC 4 cut(s) 21, 413, 631, 733
DriI GACNNNNNGTC 2 cut(s) 391, 907
EaeI YGGCCR 2 cut(s) 96, 809
EagI CGGCCG 1 cut(s) 809
Eam1104I CTCTTC 2 cut(s) 363, 508
Eam1105I GACNNNNNGTC 2 cut(s) 391, 907
EarI CTCTTC 2 cut(s) 363, 508
EciI GGCGGA 1 cut(s) 132
Ecl136II GAGCTC 2 cut(s) 156, 373
EclXI CGGCCG 1 cut(s) 809
Eco130I CCWWGG 2 cut(s) 102, 541
Eco24I GRGCYC 2 cut(s) 158, 375
Eco52I CGGCCG 1 cut(s) 809
Eco53kI GAGCTC 2 cut(s) 156, 373
Eco57I CTGAAG 1 cut(s) 906
Eco72I CACGTG 1 cut(s) 293
Eco81I CCTNAGG 1 cut(s) 738
Eco88I CYCGRG 2 cut(s) 769, 881
EcoICRI GAGCTC 2 cut(s) 156, 373
EcoNI CCTNNNNNAGG 1 cut(s) 741
EcoT14I CCWWGG 2 cut(s) 102, 541
EcoT38I GRGCYC 2 cut(s) 158, 375
ErhI CCWWGG 2 cut(s) 102, 541
Esp3I CGTCTC 1 cut(s) 1002
FaeI CATG 2 cut(s) 589, 937
FaqI GGGAC 2 cut(s) 339, 844
FatI CATG 2 cut(s) 585, 933
FauNDI CATATG 1 cut(s) 268
FblI GTMKAC 1 cut(s) 911
Fnu4HI GCNGC 6 cut(s) 133, 285, 288, 309, 570, 591
FriOI GRGCYC 2 cut(s) 158, 375
Fsp4HI GCNGC 6 cut(s) 133, 285, 288, 309, 570, 591
FspBI CTAG 5 cut(s) 48, 72, 84, 783, 842
GluI GCNGC 6 cut(s) 133, 285, 288, 309, 570, 591
HaeIII GGCC 2 cut(s) 98, 811
HapII CCGG 3 cut(s) 95, 812, 943
HgaI GACGC 3 cut(s) 124, 565, 819
Hin1I GRCGYC 2 cut(s) 830, 890
Hin1II CATG 2 cut(s) 589, 937
HincII GTYRAC 1 cut(s) 912
HindII GTYRAC 1 cut(s) 912
HinfI GANTC 6 cut(s) 137, 171, 236, 721, 772, 788
HpaII CCGG 3 cut(s) 95, 812, 943
HphI GGTGA 1 cut(s) 1038
Hpy166II GTNNAC 4 cut(s) 128, 608, 912, 1064
Hpy188I TCNGA 2 cut(s) 777, 925
Hpy188III TCNNGA 1 cut(s) 883
Hpy8I GTNNAC 4 cut(s) 128, 608, 912, 1064
Hpy99I CGWCG 4 cut(s) 559, 913, 916, 919
HpyAV CCTTC 1 cut(s) 998
HpyCH4III ACNGT 3 cut(s) 227, 389, 657
HpyCH4IV ACGT 4 cut(s) 292, 675, 890, 968
HpyCH4V TGCA 4 cut(s) 287, 839, 856, 1001
HpyF10VI GCNNNNNNNGC 6 cut(s) 57, 293, 575, 836, 853, 934
HpyF3I CTNAG 5 cut(s) 147, 635, 713, 738, 864
HpySE526I ACGT 4 cut(s) 292, 675, 890, 968
Hsp92I GRCGYC 2 cut(s) 830, 890
Hsp92II CATG 2 cut(s) 589, 937
Kzo9I GATC 4 cut(s) 21, 413, 631, 733
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 2 cut(s) 153, 161
LpnPI CCDG 7 cut(s) 108, 307, 363, 744, 825, 956, 1062
Lsp1109I GCAGC 5 cut(s) 271, 299, 320, 581, 602
LweI GCATC 2 cut(s) 190, 1060
MaeI CTAG 5 cut(s) 48, 72, 84, 783, 842
MaeII ACGT 4 cut(s) 292, 675, 890, 968
MaeIII GTNAC 5 cut(s) 172, 237, 619, 641, 651
MalI GATC 4 cut(s) 23, 415, 633, 735
MboI GATC 4 cut(s) 21, 413, 631, 733
MboII GAAGA 8 cut(s) 31, 267, 290, 380, 413, 504, 525, 575
MflI RGATCY 1 cut(s) 21
MhlI GDGCHC 4 cut(s) 158, 375, 662, 782
MluCI AATT 2 cut(s) 343, 507
MluI ACGCGT 1 cut(s) 116
MlyI GAGTC 5 cut(s) 131, 180, 245, 781, 797
MmeI TCCRAC 1 cut(s) 209
MseI TTAA 3 cut(s) 314, 612, 1031
MslI CAYNNNNRTG 1 cut(s) 486
MspA1I CMGCKG 1 cut(s) 151
MspI CCGG 3 cut(s) 95, 812, 943
MvnI CGCG 2 cut(s) 118, 135
MwoI GCNNNNNNNGC 6 cut(s) 57, 293, 575, 836, 853, 934
NdeI CATATG 1 cut(s) 268
NdeII GATC 4 cut(s) 21, 413, 631, 733
NlaIII CATG 2 cut(s) 589, 937
NlaIV GGNNCC 2 cut(s) 547, 823
NmeAIII GCCGAG 1 cut(s) 806
NmuCI GTSAC 3 cut(s) 172, 237, 651
NspI RCATGY 1 cut(s) 937
PaeR7I CTCGAG 1 cut(s) 881
PciSI GCTCTTC 1 cut(s) 363
PcsI WCGNNNNNNNCGW 1 cut(s) 914
PfeI GAWTC 1 cut(s) 721
PkrI GCNGC 6 cut(s) 134, 286, 289, 310, 571, 592
PleI GAGTC 5 cut(s) 131, 179, 244, 780, 796
PmaCI CACGTG 1 cut(s) 293
PmlI CACGTG 1 cut(s) 293
PpsI GAGTC 5 cut(s) 131, 179, 244, 780, 796
Ppu21I YACGTR 1 cut(s) 293
Psp124BI GAGCTC 2 cut(s) 158, 375
Psp1406I AACGTT 1 cut(s) 675
PspCI CACGTG 1 cut(s) 293
PspN4I GGNNCC 2 cut(s) 547, 823
PstI CTGCAG 1 cut(s) 289
PsuI RGATCY 1 cut(s) 21
RsaI GTAC 4 cut(s) 76, 129, 320, 971
RsaNI GTAC 4 cut(s) 75, 128, 319, 970
RseI CAYNNNNRTG 1 cut(s) 486
SacI GAGCTC 2 cut(s) 158, 375
SalI GTCGAC 1 cut(s) 910
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 3 cut(s) 314, 612, 1031
SatI GCNGC 6 cut(s) 133, 285, 288, 309, 570, 591
Sau3AI GATC 4 cut(s) 21, 413, 631, 733
ScaI AGTACT 1 cut(s) 320
SchI GAGTC 5 cut(s) 131, 180, 245, 781, 797
SduI GDGCHC 4 cut(s) 158, 375, 662, 782
SfaNI GCATC 2 cut(s) 190, 1060
SfcI CTRYAG 3 cut(s) 163, 285, 573
Sfr274I CTCGAG 1 cut(s) 881
SgrDI CGTCGACG 1 cut(s) 910
SlaI CTCGAG 1 cut(s) 881
SmiMI CAYNNNNRTG 1 cut(s) 486
SmlI CTYRAG 1 cut(s) 881
SmoI CTYRAG 1 cut(s) 881
SpeI ACTAGT 2 cut(s) 71, 83
Sse9I AATT 2 cut(s) 343, 507
SsiI CCGC 4 cut(s) 112, 133, 143, 151
SspMI CTAG 5 cut(s) 48, 72, 84, 783, 842
SstI GAGCTC 2 cut(s) 158, 375
StyI CCWWGG 2 cut(s) 102, 541
TaaI ACNGT 3 cut(s) 227, 389, 657
TaiI ACGT 4 cut(s) 295, 678, 893, 971
TaqI TCGA 6 cut(s) 184, 505, 630, 719, 882, 911
TasI AATT 2 cut(s) 343, 507
TatI WGTACW 1 cut(s) 318
TauI GCSGC 1 cut(s) 135
TfiI GAWTC 1 cut(s) 721
Tru1I TTAA 3 cut(s) 314, 612, 1031
Tru9I TTAA 3 cut(s) 314, 612, 1031
TscAI CASTG 3 cut(s) 660, 807, 900
TseFI GTSAC 3 cut(s) 172, 237, 651
TseI GCWGC 5 cut(s) 284, 287, 308, 569, 590
Tsp45I GTSAC 3 cut(s) 172, 237, 651
TspDTI ATGAA 3 cut(s) 216, 291, 1046
TspRI CASTG 3 cut(s) 660, 807, 900
XagI CCTNNNNNAGG 1 cut(s) 741
XceI RCATGY 1 cut(s) 937
XhoI CTCGAG 1 cut(s) 881
XmiI GTMKAC 1 cut(s) 911
XspI CTAG 5 cut(s) 48, 72, 84, 783, 842
ZraI GACGTC 1 cut(s) 891
ZrmI AGTACT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.