FvH4_6g28200

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
21716829 .. 21719970
3142 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28200.t2

Sequence Viewer

Length: 1095 bp
ATGGCGAAAACCTCACAGAAGATCCAAAAGAATACGACTCCAAGCTCTAGCAATAACAGCAACACCACCACCAGTACTACTACTACTACTAGTCCTCCGGCCACCAAGGTCAAGCGGACGCGTAAAAGCGTACGCCGCGACTCTCCGCCTCAGCGGAGCTCCATCTACAGAGGAGTCACAAGGCATCGATGGACGGGTCGGTATGAAGCTCATTTGTGGGATAAGAACTGCTGGAACGAGTCACAGAACAAGAAAGGAAGACAAGTCTATTTAGGGGCATATGATGATGAAGAAGCTGCTGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGACAAGATACAATCCTCAATTTGCCAGTTTCCACCTATGAGGAAGAGCTCAAAGAAATGGAGGGTCAATCTAAAGAAGAATACATTGGATCATTGAGGAGGAAGAGTAGTGGATTTTCTCGTGGCGTTTCGAAATATAGAGGCGTAGCAAGACACCACCATAATGGAAGATGGGAGGCTCGAATTGGAAGAGTATTTGGTAACAAATATCTCTACCTTGGAACCTTTGCGACGCAGGAAGAAGCAGCTACAGCTTACGACATGGCAGCAATTGAGTATCGTGGACTCAATGCCGTAACGAACTTCGATCTTAGTCGTTACATCAAGTCACTCTGCCCCAATAATGAAGAAATCGTTCCCAACAACACTCAACAAAACCCTAATGCTGACCTGAGTTCGATCGAAAACCCTGATTCTAAAGTAGGGTTAGGGTTGATGCCCAACAACCCGAGTCCGAGCACTAGCGAGTCAATGGTAGCGCTTCCACGGCCGGGGAGTGGTTCGTCGGCATCATCTGCACTAGGGCTTCTATTGCAATCCCCTAAGTTCAAGGAAATGCTCGAGAGGACGTCAGTGGCAGCTGACTGCAGCTCGTCTACTACTTCGGAGCCAAACATGCCGCGCCGGAGTTTCCCCGATGACATTCAAACGTACTTTGATTGCCAAGATTTGAATAGCTATGCAGAAGGGGACGACGTTATTTTCGGGGAGCTAAACTCATTTGCTTCATCTGTGTTTCATTGTGAACTCGATGCTTAG

Protein Analysis

365

Amino Acids

40.54

Weight (kDa)

7.62

Isoelectric Point (pI)

57.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 81 - 132 1.8e-11 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 908
AccI GTMKAC 1 cut(s) 932
AccII CGCG 3 cut(s) 121, 138, 958
AciI CCGC 5 cut(s) 115, 136, 146, 154, 956
AclWI GGATC 2 cut(s) 16, 433
AcoI YGGCCR 2 cut(s) 99, 824
AcvI CACGTG 1 cut(s) 305
AcyI GRCGYC 1 cut(s) 905
AfaI GTAC 4 cut(s) 76, 132, 332, 989
AfeI AGCGCT 1 cut(s) 816
AfiI CCNNNNNNNGG 2 cut(s) 827, 833
AflIII ACRYGT 1 cut(s) 119
AgsI TTSAA 4 cut(s) 328, 886, 983, 1009
AhlI ACTAGT 1 cut(s) 89
AjuI GAANNNNNNNTTGG 2 cut(s) 405, 437
Alw21I GWGCWC 3 cut(s) 161, 387, 797
AlwI GGATC 2 cut(s) 16, 433
Ama87I CYCGRG 2 cut(s) 784, 896
Aor51HI AGCGCT 1 cut(s) 816
AoxI GGCC 2 cut(s) 99, 824
ApeKI GCWGC 7 cut(s) 296, 299, 320, 581, 602, 914, 924
ArsI GACNNNNNNTTYG 2 cut(s) 1022, 1054
Asp700I GAANNNNTTC 1 cut(s) 690
AspLEI GCGC 2 cut(s) 817, 960
AsuC2I CCSGG 1 cut(s) 828
AsuII TTCGAA 1 cut(s) 467
AvaI CYCGRG 2 cut(s) 784, 896
BanII GRGCYC 2 cut(s) 161, 387
BauI CACGAG 1 cut(s) 456
BbrPI CACGTG 1 cut(s) 305
BbsI GAAGAC 1 cut(s) 265
Bbv12I GWGCWC 3 cut(s) 161, 387, 797
BbvCI CCTCAGC 1 cut(s) 150
BbvI GCAGC 7 cut(s) 283, 286, 332, 593, 614, 926, 936
BccI CCATC 3 cut(s) 170, 183, 501
BceAI ACGGC 2 cut(s) 614, 839
BcnI CCSGG 1 cut(s) 828
BcuI ACTAGT 1 cut(s) 89
BfaI CTAG 4 cut(s) 48, 90, 798, 857
BfmI CTRYAG 3 cut(s) 166, 585, 922
BfoI RGCGCY 1 cut(s) 818
BisI GCNGC 9 cut(s) 136, 297, 300, 321, 582, 603, 915, 925, 956
BlsI GCNGC 9 cut(s) 137, 298, 301, 322, 583, 604, 916, 926, 957
BmcAI AGTACT 2 cut(s) 76, 332
Bme1390I CCNGG 1 cut(s) 828
BmeT110I CYCGRG 2 cut(s) 784, 896
BmiI GGNNCC 2 cut(s) 559, 945
BmrFI CCNGG 1 cut(s) 828
BmrI ACTGGG 1 cut(s) 343
BmsI GCATC 4 cut(s) 193, 762, 854, 1078
BmuI ACTGGG 1 cut(s) 343
BpiI GAAGAC 1 cut(s) 265
BplI GAGNNNNNCTC 2 cut(s) 1037, 1069
Bpu10I CCTNAGC 1 cut(s) 150
Bpu14I TTCGAA 1 cut(s) 467
BpuMI CCSGG 1 cut(s) 828
Bsa29I ATCGAT 1 cut(s) 187
BsaAI YACGTR 1 cut(s) 305
BsaHI GRCGYC 1 cut(s) 905
BsaJI CCNNGG 4 cut(s) 105, 553, 821, 827
BsaXI ACNNNNNCTCC 4 cut(s) 79, 109, 427, 457
Bsc4I CCNNNNNNNGG 2 cut(s) 827, 833
Bse1I ACTGG 3 cut(s) 72, 338, 362
BseCI ATCGAT 1 cut(s) 187
BseDI CCNNGG 4 cut(s) 105, 553, 821, 827
BseLI CCNNNNNNNGG 2 cut(s) 827, 833
BseMII CTCAG 2 cut(s) 164, 719
BseNI ACTGG 3 cut(s) 72, 338, 362
BseRI GAGGAG 2 cut(s) 186, 448
BseX3I CGGCCG 1 cut(s) 824
BseXI GCAGC 7 cut(s) 283, 286, 332, 593, 614, 926, 936
BsgI GTGCAG 2 cut(s) 285, 837
Bsh1236I CGCG 3 cut(s) 121, 138, 958
Bsh1285I CGRYCG 2 cut(s) 738, 827
BshFI GGCC 2 cut(s) 101, 826
BshVI ATCGAT 1 cut(s) 187
BsiEI CGRYCG 2 cut(s) 738, 827
BsiHKAI GWGCWC 3 cut(s) 161, 387, 797
BsiHKCI CYCGRG 2 cut(s) 784, 896
BsiSI CCGG 3 cut(s) 98, 827, 961
BsiWI CGTACG 1 cut(s) 130
BslFI GGGAC 2 cut(s) 351, 1040
BslI CCNNNNNNNGG 2 cut(s) 827, 833
BsmFI GGGAC 2 cut(s) 351, 1040
BsnI GGCC 2 cut(s) 101, 826
BsoBI CYCGRG 2 cut(s) 784, 896
Bsp119I TTCGAA 1 cut(s) 467
Bsp1286I GDGCHC 3 cut(s) 161, 387, 797
Bsp143I GATC 4 cut(s) 21, 425, 643, 735
BspACI CCGC 5 cut(s) 115, 136, 146, 154, 956
BspANI GGCC 2 cut(s) 101, 826
BspCNI CTCAG 2 cut(s) 163, 720
BspDI ATCGAT 1 cut(s) 187
BspFNI CGCG 3 cut(s) 121, 138, 958
BspLI GGNNCC 2 cut(s) 559, 945
BspMAI CTGCAG 1 cut(s) 926
BspPI GGATC 2 cut(s) 16, 433
BspQI GCTCTTC 1 cut(s) 375
BspT104I TTCGAA 1 cut(s) 467
BsrI ACTGG 3 cut(s) 72, 338, 362
BssECI CCNNGG 4 cut(s) 105, 553, 821, 827
BssMI GATC 4 cut(s) 21, 425, 643, 735
BssNI GRCGYC 1 cut(s) 905
BssSI CACGAG 1 cut(s) 456
BssT1I CCWWGG 2 cut(s) 105, 553
Bst2BI CACGAG 1 cut(s) 456
Bst6I CTCTTC 3 cut(s) 375, 434, 520
BstACI GRCGYC 1 cut(s) 905
BstAPI GCANNNNNTGC 1 cut(s) 851
BstBAI YACGTR 1 cut(s) 305
BstBI TTCGAA 1 cut(s) 467
BstDEI CTNAG 5 cut(s) 150, 647, 728, 879, 1092
BstDSI CCRYGG 1 cut(s) 821
BstFNI CGCG 3 cut(s) 121, 138, 958
BstH2I RGCGCY 1 cut(s) 818
BstHHI GCGC 2 cut(s) 817, 960
BstKTI GATC 4 cut(s) 24, 428, 646, 738
BstMBI GATC 4 cut(s) 21, 425, 643, 735
BstMCI CGRYCG 2 cut(s) 738, 827
BstMWI GCNNNNNNNGC 8 cut(s) 57, 135, 305, 587, 823, 851, 868, 952
BstNSI RCATGY 1 cut(s) 955
BstSCI CCNGG 1 cut(s) 826
BstSFI CTRYAG 3 cut(s) 166, 585, 922
BstUI CGCG 3 cut(s) 121, 138, 958
BstV1I GCAGC 7 cut(s) 283, 286, 332, 593, 614, 926, 936
BstV2I GAAGAC 1 cut(s) 265
BstX2I RGATCY 1 cut(s) 21
BstXI CCANNNNNNTGG 1 cut(s) 500
BstYI RGATCY 1 cut(s) 21
BstZI CGGCCG 1 cut(s) 824
Bsu15I ATCGAT 1 cut(s) 187
BsuRI GGCC 2 cut(s) 101, 826
BsuTUI ATCGAT 1 cut(s) 187
BtgI CCRYGG 1 cut(s) 821
BtsIMutI CAGTG 1 cut(s) 915
CfoI GCGC 2 cut(s) 817, 960
ClaI ATCGAT 1 cut(s) 187
CseI GACGC 2 cut(s) 127, 577
Csp6I GTAC 4 cut(s) 75, 131, 331, 988
CviAII CATG 2 cut(s) 598, 952
CviQI GTAC 4 cut(s) 75, 131, 331, 988
DdeI CTNAG 5 cut(s) 150, 647, 728, 879, 1092
DpnI GATC 4 cut(s) 23, 427, 645, 737
DpnII GATC 4 cut(s) 21, 425, 643, 735
EaeI YGGCCR 2 cut(s) 99, 824
EagI CGGCCG 1 cut(s) 824
Eam1104I CTCTTC 3 cut(s) 375, 434, 520
EarI CTCTTC 3 cut(s) 375, 434, 520
EciI GGCGGA 1 cut(s) 135
Ecl136II GAGCTC 2 cut(s) 159, 385
EclXI CGGCCG 1 cut(s) 824
Eco130I CCWWGG 2 cut(s) 105, 553
Eco24I GRGCYC 2 cut(s) 161, 387
Eco47III AGCGCT 1 cut(s) 816
Eco52I CGGCCG 1 cut(s) 824
Eco53kI GAGCTC 2 cut(s) 159, 385
Eco72I CACGTG 1 cut(s) 305
Eco88I CYCGRG 2 cut(s) 784, 896
EcoICRI GAGCTC 2 cut(s) 159, 385
EcoT14I CCWWGG 2 cut(s) 105, 553
EcoT38I GRGCYC 2 cut(s) 161, 387
ErhI CCWWGG 2 cut(s) 105, 553
FaeI CATG 2 cut(s) 601, 955
FaqI GGGAC 2 cut(s) 351, 1040
FatI CATG 2 cut(s) 597, 951
FauNDI CATATG 1 cut(s) 280
FblI GTMKAC 1 cut(s) 932
Fnu4HI GCNGC 9 cut(s) 136, 297, 300, 321, 582, 603, 915, 925, 956
FriOI GRGCYC 2 cut(s) 161, 387
Fsp4HI GCNGC 9 cut(s) 136, 297, 300, 321, 582, 603, 915, 925, 956
FspBI CTAG 4 cut(s) 48, 90, 798, 857
GlaI GCGC 2 cut(s) 816, 959
GluI GCNGC 9 cut(s) 136, 297, 300, 321, 582, 603, 915, 925, 956
HaeII RGCGCY 1 cut(s) 818
HaeIII GGCC 2 cut(s) 101, 826
HapII CCGG 3 cut(s) 98, 827, 961
HgaI GACGC 2 cut(s) 127, 577
HhaI GCGC 2 cut(s) 817, 960
Hin1I GRCGYC 1 cut(s) 905
Hin1II CATG 2 cut(s) 601, 955
Hin6I GCGC 2 cut(s) 815, 958
HinP1I GCGC 2 cut(s) 815, 958
HinfI GANTC 8 cut(s) 37, 140, 174, 239, 621, 749, 787, 803
HpaII CCGG 3 cut(s) 98, 827, 961
Hpy166II GTNNAC 3 cut(s) 620, 933, 1082
Hpy188I TCNGA 2 cut(s) 792, 943
Hpy188III TCNNGA 1 cut(s) 898
Hpy8I GTNNAC 3 cut(s) 620, 933, 1082
Hpy99I CGWCG 3 cut(s) 571, 844, 1034
HpyAV CCTTC 1 cut(s) 1016
HpyCH4IV ACGT 4 cut(s) 304, 905, 986, 1032
HpyCH4V TGCA 5 cut(s) 302, 854, 871, 924, 1019
HpyF10VI GCNNNNNNNGC 8 cut(s) 57, 135, 305, 587, 823, 851, 868, 952
HpyF3I CTNAG 5 cut(s) 150, 647, 728, 879, 1092
HpySE526I ACGT 4 cut(s) 304, 905, 986, 1032
Hsp92I GRCGYC 1 cut(s) 905
Hsp92II CATG 2 cut(s) 601, 955
HspAI GCGC 2 cut(s) 815, 958
Kzo9I GATC 4 cut(s) 21, 425, 643, 735
LguI GCTCTTC 1 cut(s) 375
LmnI GCTCC 4 cut(s) 156, 164, 943, 1045
Lsp1109I GCAGC 7 cut(s) 283, 286, 332, 593, 614, 926, 936
LweI GCATC 4 cut(s) 193, 762, 854, 1078
MaeI CTAG 4 cut(s) 48, 90, 798, 857
MaeII ACGT 4 cut(s) 304, 905, 986, 1032
MaeIII GTNAC 6 cut(s) 175, 240, 536, 631, 653, 663
MalI GATC 4 cut(s) 23, 427, 645, 737
MboI GATC 4 cut(s) 21, 425, 643, 735
MfeI CAATTG 1 cut(s) 606
MflI RGATCY 1 cut(s) 21
MhlI GDGCHC 3 cut(s) 161, 387, 797
MluCI AATT 3 cut(s) 355, 519, 606
MluI ACGCGT 1 cut(s) 119
MlyI GAGTC 7 cut(s) 31, 134, 183, 248, 615, 796, 812
MroXI GAANNNNTTC 1 cut(s) 690
MslI CAYNNNNRTG 1 cut(s) 498
MspA1I CMGCKG 2 cut(s) 154, 917
MspI CCGG 3 cut(s) 98, 827, 961
MspR9I CCNGG 1 cut(s) 828
MunI CAATTG 1 cut(s) 606
MvnI CGCG 3 cut(s) 121, 138, 958
MwoI GCNNNNNNNGC 8 cut(s) 57, 135, 305, 587, 823, 851, 868, 952
NciI CCSGG 1 cut(s) 828
NdeI CATATG 1 cut(s) 280
NdeII GATC 4 cut(s) 21, 425, 643, 735
NlaIII CATG 2 cut(s) 601, 955
NlaIV GGNNCC 2 cut(s) 559, 945
NmuCI GTSAC 3 cut(s) 175, 240, 663
NspI RCATGY 1 cut(s) 955
NspV TTCGAA 1 cut(s) 467
PaeR7I CTCGAG 1 cut(s) 896
PciSI GCTCTTC 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 690
PfeI GAWTC 1 cut(s) 749
Pfl23II CGTACG 1 cut(s) 130
PkrI GCNGC 9 cut(s) 137, 298, 301, 322, 583, 604, 916, 926, 957
Ple19I CGATCG 1 cut(s) 738
PleI GAGTC 7 cut(s) 31, 134, 182, 247, 615, 795, 811
PmaCI CACGTG 1 cut(s) 305
PmlI CACGTG 1 cut(s) 305
PpsI GAGTC 7 cut(s) 31, 134, 182, 247, 615, 795, 811
Ppu21I YACGTR 1 cut(s) 305
Psp124BI GAGCTC 2 cut(s) 161, 387
PspCI CACGTG 1 cut(s) 305
PspLI CGTACG 1 cut(s) 130
PspN4I GGNNCC 2 cut(s) 559, 945
PstI CTGCAG 1 cut(s) 926
PsuI RGATCY 1 cut(s) 21
PvuI CGATCG 1 cut(s) 738
PvuII CAGCTG 1 cut(s) 917
RsaI GTAC 4 cut(s) 76, 132, 332, 989
RsaNI GTAC 4 cut(s) 75, 131, 331, 988
RseI CAYNNNNRTG 1 cut(s) 498
SacI GAGCTC 2 cut(s) 161, 387
SapI GCTCTTC 1 cut(s) 375
SatI GCNGC 9 cut(s) 136, 297, 300, 321, 582, 603, 915, 925, 956
Sau3AI GATC 4 cut(s) 21, 425, 643, 735
ScaI AGTACT 2 cut(s) 76, 332
SchI GAGTC 7 cut(s) 31, 134, 183, 248, 615, 796, 812
ScrFI CCNGG 1 cut(s) 828
SduI GDGCHC 3 cut(s) 161, 387, 797
SfaNI GCATC 4 cut(s) 193, 762, 854, 1078
SfcI CTRYAG 3 cut(s) 166, 585, 922
Sfr274I CTCGAG 1 cut(s) 896
SfuI TTCGAA 1 cut(s) 467
SlaI CTCGAG 1 cut(s) 896
SmiMI CAYNNNNRTG 1 cut(s) 498
SmlI CTYRAG 1 cut(s) 896
SmoI CTYRAG 1 cut(s) 896
SpeI ACTAGT 1 cut(s) 89
Sse9I AATT 3 cut(s) 355, 519, 606
SsiI CCGC 5 cut(s) 115, 136, 146, 154, 956
SspMI CTAG 4 cut(s) 48, 90, 798, 857
SstI GAGCTC 2 cut(s) 161, 387
StyD4I CCNGG 1 cut(s) 826
StyI CCWWGG 2 cut(s) 105, 553
TaiI ACGT 4 cut(s) 307, 908, 989, 1035
TaqI TCGA 8 cut(s) 187, 467, 517, 642, 734, 738, 897, 1086
TasI AATT 3 cut(s) 355, 519, 606
TatI WGTACW 2 cut(s) 74, 330
TauI GCSGC 2 cut(s) 138, 958
TfiI GAWTC 1 cut(s) 749
TscAI CASTG 1 cut(s) 915
TseFI GTSAC 3 cut(s) 175, 240, 663
TseI GCWGC 7 cut(s) 296, 299, 320, 581, 602, 914, 924
Tsp45I GTSAC 3 cut(s) 175, 240, 663
TspDTI ATGAA 5 cut(s) 219, 303, 696, 1053, 1064
TspRI CASTG 1 cut(s) 915
XceI RCATGY 1 cut(s) 955
XhoI CTCGAG 1 cut(s) 896
XmiI GTMKAC 1 cut(s) 932
XmnI GAANNNNTTC 1 cut(s) 690
XspI CTAG 4 cut(s) 48, 90, 798, 857
ZraI GACGTC 1 cut(s) 906
ZrmI AGTACT 2 cut(s) 76, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.