Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002197

Physical Location & Seq

Genomic Coordinates Reverse (-)

23120362 .. 23123216

Gene Structure 2855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00349830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCCAAATTATCACCTCAGAACCAGAAAACCAATGCAAGTAATAATGCAACTACTACTGCTGCAGTTAATAATGCAAATGCAGCTAATAAAACTGCAGTCACAAAGGTGAAACGAACCAGGAGAAGTGTCCCGAGGGACTCCCCACCTCAACGCAGCTCCATTTATCGAGGCGTCACCAGGTTCCTAAACGAGGTTTTCTCTGCGGTTACTTGTTCAGGCATCGATGGACTGGCCGATATGAGGCTCATCTGTGGGACAAGAATTGCTGGAATGAATCACAAAACAAGAAAGGCCGCCAAGTTTTTGGTATTGATTTTATCAGGAGCATATGATGATGAAAAAGCTGCAGCACATGCTTATGACTTAGCAGCGCTTAAGTACTGGGGTCAAGATACCATTCTTAACTTTCCGTTAGCTACATACCACAAAGAAATGAATGATATGGAAGGCCAATCGAGAGAGGAATATATTGGATCCTTGAGAAGACATCATCACAATGGAAGATGGGAAGCTCGAATTGGCCGGGTCTTTGGAAACAAATATCTCTATCTCGGGACATATGTTACCAACTTTGATCTCAGCCGTTACATCAAGTGGCTAAAACCAAATGGTCCTAACAATGACATTATTGCCCAGACAACTAACGTTGAAGCTAAATTGGTTGGAGATGTAACCCAAAACCCTAATGATCAAGACCAAACTGGACTAGGTTTCTTCCACAACCTCGCATACAGTCCTCCTGAAGAAACCACGATGACCCAGTTGCCTCGGCCGACCTCTGCTACTTCAGCCCTAGGGCTCCTGCTTCAGTCATCAAAGTTCAAGGAGATGATGGAGATGACAACGGCCACCGACGCATCCATGACATCGTCATCCCTGCCGGAACTGCCTCAGTGCGCTTTTCCCGACGACATACAGACTTACTTCGACTGCCAAGATTCTACGAGCTATGGAGATGGAGACGATGCTATGTTCAGTGAGCTCAACTCATACATCCCGTCCATGTTTCAATGCGATTTCACCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

343

Amino Acids

38.13

Weight (kDa)

6.66

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G79700 AT1G79700 AT1G79700 AT1G79700
fragaria_vesca	FvH4_4g08800 FvH4_6g28200 FvH4_6g28200 FvH4_6g28200
malus_domestica	MD09G1228500.v1.1 MD16G1258700.v1.1 MD17G1226700.v1.1
prunus_persica	Prupe.1G101600_v2.0.a1 Prupe.3G104100_v2.0.a1
pyrus_communis	pycom09g14740 pycom17g23010
rosa_chinensis	RchiOBHm_Chr2g0132251 RchiOBHm_Chr4g0405371
rosa_laevigata	RLG00000008847 RLG00000019240
rosa_multiflora	Rmu_sc0006313.1_g000002 Rmu_sc0011487.1_g000002
rosa_roxburghii	Rroxscaffold_2G00112250 Rroxscaffold_5G00349830
rosa_rugosa	Rorug02G0303000 Rorug02G0303000 Rorug04G0057800
rosa_samantha	Rh2AG356200 Rh2BG362600 Rh2CG339700 Rh2DG379500 Rh4AG131300 Rh4BG125900 Rh4CG138400 Rh4DG125400
rosa_wichuraiana	Rw2G028940 Rw4G010640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	206, 297
AclI	AACGTT	1 cut(s)	648
AclWI	GGATC	2 cut(s)	471, 484
AcoI	YGGCCR	5 cut(s)	3, 234, 523, 773, 849
AcuI	CTGAAG	3 cut(s)	765, 774, 794
AcyI	GRCGYC	1 cut(s)	174
AfaI	GTAC	1 cut(s)	383
AfeI	AGCGCT	1 cut(s)	375
AfiI	CCNNNNNNNGG	2 cut(s)	193, 243
AflII	CTTAAG	1 cut(s)	377
AgsI	TTSAA	3 cut(s)	653, 826, 1013
AjnI	CCWGG	2 cut(s)	119, 179
AjuI	GAANNNNNNNTTGG	2 cut(s)	504, 536
AleI	CACNNNNGTG	1 cut(s)	107
AluBI	AGCT	8 cut(s)	86, 159, 347, 419, 515, 656, 951, 985
AluI	AGCT	8 cut(s)	86, 159, 347, 419, 515, 656, 951, 985
Alw21I	GWGCWC	1 cut(s)	987
Alw26I	GTCTC	1 cut(s)	957
AlwI	GGATC	2 cut(s)	471, 484
Ama87I	CYCGRG	2 cut(s)	133, 554
Aor51HI	AGCGCT	1 cut(s)	375
AoxI	GGCC	7 cut(s)	3, 234, 294, 451, 523, 773, 849
ApeKI	GCWGC	6 cut(s)	62, 83, 156, 347, 350, 371
AspA2I	CCTAGG	1 cut(s)	796
AspLEI	GCGC	2 cut(s)	376, 902
AspS9I	GGNCC	1 cut(s)	614
AsuC2I	CCSGG	1 cut(s)	527
AsuHPI	GGTGA	4 cut(s)	6, 121, 169, 1015
AvaI	CYCGRG	2 cut(s)	133, 554
AvaII	GGWCC	1 cut(s)	614
AvrII	CCTAGG	1 cut(s)	796
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	476
BanII	GRGCYC	2 cut(s)	804, 987
BbsI	GAAGAC	1 cut(s)	493
Bbv12I	GWGCWC	1 cut(s)	987
BbvI	GCAGC	6 cut(s)	49, 95, 168, 334, 362, 383
BccI	CCATC	4 cut(s)	221, 501, 829, 953
BceAI	ACGGC	2 cut(s)	570, 864
BciT130I	CCWGG	2 cut(s)	121, 181
BclI	TGATCA	1 cut(s)	691
BcnI	CCSGG	1 cut(s)	527
BcoDI	GTCTC	1 cut(s)	957
BfaI	CTAG	3 cut(s)	710, 797, 1030
BfmI	CTRYAG	3 cut(s)	63, 96, 348
BfoI	RGCGCY	1 cut(s)	377
BfrI	CTTAAG	1 cut(s)	377
BisI	GCNGC	7 cut(s)	63, 84, 157, 297, 348, 351, 372
BlnI	CCTAGG	1 cut(s)	796
BlsI	GCNGC	7 cut(s)	64, 85, 158, 298, 349, 352, 373
BmcAI	AGTACT	1 cut(s)	383
Bme1390I	CCNGG	3 cut(s)	121, 181, 527
Bme18I	GGWCC	1 cut(s)	614
BmeT110I	CYCGRG	2 cut(s)	133, 554
BmgT120I	GGNCC	1 cut(s)	614
BmiI	GGNNCC	3 cut(s)	185, 478, 803
BmrFI	CCNGG	3 cut(s)	121, 181, 527
BmrI	ACTGGG	2 cut(s)	394, 757
BmsI	GCATC	3 cut(s)	231, 869, 958
BmuI	ACTGGG	2 cut(s)	394, 757
BpiI	GAAGAC	1 cut(s)	493
BplI	GAGNNNNNCTC	4 cut(s)	185, 217, 974, 1006
BpuEI	CTTGAG	1 cut(s)	502
BpuMI	CCSGG	1 cut(s)	527
Bsa29I	ATCGAT	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	174
BsaJI	CCNNGG	3 cut(s)	134, 770, 796
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 243
Bse1I	ACTGG	4 cut(s)	237, 389, 709, 763
BseBI	CCWGG	2 cut(s)	121, 181
BseCI	ATCGAT	1 cut(s)	225
BseDI	CCNNGG	3 cut(s)	134, 770, 796
BseGI	GGATG	3 cut(s)	860, 875, 996
BseLI	CCNNNNNNNGG	2 cut(s)	193, 243
BseMII	CTCAG	3 cut(s)	32, 595, 908
BseNI	ACTGG	4 cut(s)	237, 389, 709, 763
BseX3I	CGGCCG	1 cut(s)	773
BseXI	GCAGC	6 cut(s)	49, 95, 168, 334, 362, 383
Bsh1285I	CGRYCG	1 cut(s)	776
BshFI	GGCC	7 cut(s)	5, 236, 296, 453, 525, 775, 851
BshVI	ATCGAT	1 cut(s)	225
BsiEI	CGRYCG	1 cut(s)	776
BsiHKAI	GWGCWC	1 cut(s)	987
BsiHKCI	CYCGRG	2 cut(s)	133, 554
BsiSI	CCGG	2 cut(s)	526, 884
BslFI	GGGAC	4 cut(s)	116, 152, 271, 571
BslI	CCNNNNNNNGG	2 cut(s)	193, 243
BsmAI	GTCTC	1 cut(s)	957
BsmBI	CGTCTC	1 cut(s)	957
BsmFI	GGGAC	4 cut(s)	116, 152, 271, 571
BsnI	GGCC	7 cut(s)	5, 236, 296, 453, 525, 775, 851
BsoBI	CYCGRG	2 cut(s)	133, 554
Bsp1286I	GDGCHC	2 cut(s)	804, 987
Bsp143I	GATC	3 cut(s)	476, 577, 691
BspACI	CCGC	2 cut(s)	206, 297
BspANI	GGCC	7 cut(s)	5, 236, 296, 453, 525, 775, 851
BspCNI	CTCAG	3 cut(s)	31, 594, 907
BspDI	ATCGAT	1 cut(s)	225
BspLI	GGNNCC	3 cut(s)	185, 478, 803
BspMAI	CTGCAG	3 cut(s)	67, 100, 352
BspPI	GGATC	2 cut(s)	471, 484
BspTI	CTTAAG	1 cut(s)	377
BsrI	ACTGG	4 cut(s)	237, 389, 709, 763
BssECI	CCNNGG	3 cut(s)	134, 770, 796
BssMI	GATC	3 cut(s)	476, 577, 691
BssNI	GRCGYC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	796
Bst2UI	CCWGG	2 cut(s)	121, 181
Bst4CI	ACNGT	2 cut(s)	737, 1027
BstACI	GRCGYC	1 cut(s)	174
BstAFI	CTTAAG	1 cut(s)	377
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstDEI	CTNAG	4 cut(s)	18, 367, 581, 894
BstENI	CCTNNNNNAGG	1 cut(s)	191
BstF5I	GGATG	3 cut(s)	860, 875, 996
BstH2I	RGCGCY	1 cut(s)	377
BstHHI	GCGC	2 cut(s)	376, 902
BstKTI	GATC	3 cut(s)	479, 580, 694
BstMAI	GTCTC	1 cut(s)	957
BstMBI	GATC	3 cut(s)	476, 577, 691
BstMCI	CGRYCG	1 cut(s)	776
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 356, 791, 857, 889
BstNI	CCWGG	2 cut(s)	121, 181
BstNSI	RCATGY	1 cut(s)	359
BstSCI	CCNGG	3 cut(s)	119, 179, 525
BstSFI	CTRYAG	3 cut(s)	63, 96, 348
BstV1I	GCAGC	6 cut(s)	49, 95, 168, 334, 362, 383
BstV2I	GAAGAC	1 cut(s)	493
BstX2I	RGATCY	1 cut(s)	476
BstXI	CCANNNNNNTGG	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	476
BstZI	CGGCCG	1 cut(s)	773
Bsu15I	ATCGAT	1 cut(s)	225
BsuRI	GGCC	7 cut(s)	5, 236, 296, 453, 525, 775, 851
BsuTUI	ATCGAT	1 cut(s)	225
BtsCI	GGATG	3 cut(s)	860, 875, 996
BtsIMutI	CAGTG	2 cut(s)	902, 985
CfoI	GCGC	2 cut(s)	376, 902
Cfr13I	GGNCC	1 cut(s)	614
ClaI	ATCGAT	1 cut(s)	225
CseI	GACGC	2 cut(s)	163, 866
CsiI	ACCWGGT	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	3 cut(s)	356, 865, 1006
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	4 cut(s)	18, 367, 581, 894
DpnI	GATC	3 cut(s)	478, 579, 693
DpnII	GATC	3 cut(s)	476, 577, 691
EaeI	YGGCCR	5 cut(s)	3, 234, 523, 773, 849
EagI	CGGCCG	1 cut(s)	773
Ecl136II	GAGCTC	1 cut(s)	985
EclXI	CGGCCG	1 cut(s)	773
Eco130I	CCWWGG	1 cut(s)	796
Eco24I	GRGCYC	2 cut(s)	804, 987
Eco47I	GGWCC	1 cut(s)	614
Eco47III	AGCGCT	1 cut(s)	375
Eco52I	CGGCCG	1 cut(s)	773
Eco53kI	GAGCTC	1 cut(s)	985
Eco57I	CTGAAG	3 cut(s)	765, 774, 794
Eco88I	CYCGRG	2 cut(s)	133, 554
EcoICRI	GAGCTC	1 cut(s)	985
EcoNI	CCTNNNNNAGG	1 cut(s)	191
EcoRII	CCWGG	2 cut(s)	119, 179
EcoT14I	CCWWGG	1 cut(s)	796
EcoT38I	GRGCYC	2 cut(s)	804, 987
ErhI	CCWWGG	1 cut(s)	796
Esp3I	CGTCTC	1 cut(s)	957
FaeI	CATG	3 cut(s)	359, 868, 1009
FaqI	GGGAC	4 cut(s)	116, 152, 271, 571
FatI	CATG	3 cut(s)	355, 864, 1005
FauNDI	CATATG	2 cut(s)	331, 562
FbaI	TGATCA	1 cut(s)	691
Fnu4HI	GCNGC	7 cut(s)	63, 84, 157, 297, 348, 351, 372
FokI	GGATG	3 cut(s)	847, 862, 983
FriOI	GRGCYC	2 cut(s)	804, 987
Fsp4HI	GCNGC	7 cut(s)	63, 84, 157, 297, 348, 351, 372
FspBI	CTAG	3 cut(s)	710, 797, 1030
GlaI	GCGC	2 cut(s)	375, 901
GluI	GCNGC	7 cut(s)	63, 84, 157, 297, 348, 351, 372
HaeII	RGCGCY	1 cut(s)	377
HaeIII	GGCC	7 cut(s)	5, 236, 296, 453, 525, 775, 851
HapII	CCGG	2 cut(s)	526, 884
HgaI	GACGC	2 cut(s)	163, 866
HhaI	GCGC	2 cut(s)	376, 902
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	3 cut(s)	359, 868, 1009
Hin6I	GCGC	2 cut(s)	374, 900
HinP1I	GCGC	2 cut(s)	374, 900
HinfI	GANTC	3 cut(s)	140, 277, 941
HpaII	CCGG	2 cut(s)	526, 884
HphI	GGTGA	4 cut(s)	6, 121, 169, 1015
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	8 cut(s)	133, 324, 392, 459, 556, 695, 743, 908
Hpy99I	CGWCG	2 cut(s)	860, 914
HpyAV	CCTTC	1 cut(s)	443
HpyCH4III	ACNGT	2 cut(s)	737, 1027
HpyCH4IV	ACGT	1 cut(s)	648
HpyCH4V	TGCA	7 cut(s)	38, 50, 65, 77, 83, 98, 350
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 356, 791, 857, 889
HpyF3I	CTNAG	4 cut(s)	18, 367, 581, 894
HpySE526I	ACGT	1 cut(s)	648
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	3 cut(s)	359, 868, 1009
HspAI	GCGC	2 cut(s)	374, 900
Ksp22I	TGATCA	1 cut(s)	691
Kzo9I	GATC	3 cut(s)	476, 577, 691
LmnI	GCTCC	3 cut(s)	164, 326, 807
Lsp1109I	GCAGC	6 cut(s)	49, 95, 168, 334, 362, 383
LweI	GCATC	3 cut(s)	231, 869, 958
MabI	ACCWGGT	1 cut(s)	179
MaeI	CTAG	3 cut(s)	710, 797, 1030
MaeII	ACGT	1 cut(s)	648
MaeIII	GTNAC	6 cut(s)	100, 175, 208, 565, 587, 673
MalI	GATC	3 cut(s)	478, 579, 693
MboI	GATC	3 cut(s)	476, 577, 691
MboII	GAAGA	4 cut(s)	498, 516, 709, 758
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	2 cut(s)	804, 987
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	8, 264, 519, 659
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	646
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	69, 378, 405
MslI	CAYNNNNRTG	3 cut(s)	107, 360, 498
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	377
MspI	CCGG	2 cut(s)	526, 884
MspR9I	CCNGG	3 cut(s)	121, 181, 527
MvaI	CCWGG	2 cut(s)	121, 181
MwoI	GCNNNNNNNGC	5 cut(s)	83, 356, 791, 857, 889
NciI	CCSGG	1 cut(s)	527
NdeI	CATATG	2 cut(s)	331, 562
NdeII	GATC	3 cut(s)	476, 577, 691
NlaIII	CATG	3 cut(s)	359, 868, 1009
NlaIV	GGNNCC	3 cut(s)	185, 478, 803
NmeAIII	GCCGAG	1 cut(s)	751
NmuCI	GTSAC	2 cut(s)	100, 175
NspI	RCATGY	1 cut(s)	359
OliI	CACNNNNGTG	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	277, 941
PflFI	GACNNNGTC	1 cut(s)	871
PkrI	GCNGC	7 cut(s)	64, 85, 158, 298, 349, 352, 373
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
Psp124BI	GAGCTC	1 cut(s)	987
Psp1406I	AACGTT	1 cut(s)	648
Psp6I	CCWGG	2 cut(s)	119, 179
PspGI	CCWGG	2 cut(s)	119, 179
PspN4I	GGNNCC	3 cut(s)	185, 478, 803
PspPI	GGNCC	1 cut(s)	614
PstI	CTGCAG	3 cut(s)	67, 100, 352
PsuI	RGATCY	1 cut(s)	476
PsyI	GACNNNGTC	1 cut(s)	871
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
RseI	CAYNNNNRTG	3 cut(s)	107, 360, 498
SacI	GAGCTC	1 cut(s)	987
SaqAI	TTAA	3 cut(s)	69, 378, 405
SatI	GCNGC	7 cut(s)	63, 84, 157, 297, 348, 351, 372
Sau3AI	GATC	3 cut(s)	476, 577, 691
Sau96I	GGNCC	1 cut(s)	614
ScaI	AGTACT	1 cut(s)	383
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	3 cut(s)	121, 181, 527
SduI	GDGCHC	2 cut(s)	804, 987
SexAI	ACCWGGT	1 cut(s)	179
SfaNI	GCATC	3 cut(s)	231, 869, 958
SfcI	CTRYAG	3 cut(s)	63, 96, 348
SinI	GGWCC	1 cut(s)	614
SmiMI	CAYNNNNRTG	3 cut(s)	107, 360, 498
SmlI	CTYRAG	2 cut(s)	377, 481
SmoI	CTYRAG	2 cut(s)	377, 481
Sse9I	AATT	4 cut(s)	8, 264, 519, 659
SsiI	CCGC	2 cut(s)	206, 297
SspMI	CTAG	3 cut(s)	710, 797, 1030
SstI	GAGCTC	1 cut(s)	987
StyD4I	CCNGG	3 cut(s)	119, 179, 525
StyI	CCWWGG	1 cut(s)	796
TaaI	ACNGT	2 cut(s)	737, 1027
TaiI	ACGT	1 cut(s)	651
TaqI	TCGA	5 cut(s)	169, 225, 458, 517, 930
TasI	AATT	4 cut(s)	8, 264, 519, 659
TatI	WGTACW	1 cut(s)	381
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	2 cut(s)	277, 941
Tru1I	TTAA	3 cut(s)	69, 378, 405
Tru9I	TTAA	3 cut(s)	69, 378, 405
TscAI	CASTG	2 cut(s)	902, 985
TseFI	GTSAC	2 cut(s)	100, 175
TseI	GCWGC	6 cut(s)	62, 83, 156, 347, 350, 371
Tsp45I	GTSAC	2 cut(s)	100, 175
TspDTI	ATGAA	3 cut(s)	290, 354, 452
TspGWI	ACGGA	1 cut(s)	402
TspRI	CASTG	2 cut(s)	902, 985
Tth111I	GACNNNGTC	1 cut(s)	871
Vha464I	CTTAAG	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	614
XagI	CCTNNNNNAGG	1 cut(s)	191
XceI	RCATGY	1 cut(s)	359
XmaJI	CCTAGG	1 cut(s)	796
XspI	CTAG	3 cut(s)	710, 797, 1030
ZrmI	AGTACT	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.