Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006313.1

Orthogroup ID

OG0002197

Physical Location & Seq

Genomic Coordinates Forward (+)

8449 .. 10914

Gene Structure 2466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006313.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

atggcgaaaacctcacagaagatccaaaagaatacaactccaagctctagcaataatagcaacaccaccactagtactactactagtagtcctccggccaccaaggtcaagcggacgcgtaaaagtgtacgccgcgactctccgcctcagcggagctccatctacagaggagtcacaaggcatcgatggacgggtcggtatgaagctcatttgtgggataagaactgttggaatgagtcacagaacaagaaaggcagacaaggggcatatgatgatgaagaagctgctgcacgtgcctatgacttggcagcattaaagtactggggacaagatacaatcctcaatttgccagtttccacctatgaggaagagctcaaagaaatggacggtcagtctaaagaagaatacattggatcattgaggaggaagagtagtggattttctcgtggtgtttcaaaatatagaggtgtagcaagacaccaccataatggaagatgggaggctcgaattggaagagtatttggaaacaaatatctctaccttggaacctatgcgacgcaagaagaagcagctacagcttacgacatggcagcaatagagtatcgtggacttaatgccgtaacgaacttcgatcttagccgttacatcaagtcactgtgccccaataatgagaacgttcccaacaacacgcaaccaaaccctaatgctgacctcagttcgattcaaaaccctgattctaaggtagggttagggtttatgccccacaacccgagtccgagcactagcgagtcaatggtagcagtgccacggcaggggaatggttcgtcggcgtcatctgcactagggcttttattgcagtcccctaagttcaaggaaatgctcgagaggacgtcagtggtagactgttcgtcaacgacgactttggagccaaacatgccgcgccggagtttccccgatgacattcaaacgtactttgattgtcaagatttgaatagctatgcagaaggagacgacattattttcggggagttaaactcatttgcttcacctgtttttcattgtgaacttgatgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010033 GO:0010035 GO:0010187 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0040008 GO:0042221 GO:0042304 GO:0045723 GO:0045834 GO:0045923 GO:0046889 GO:0046890 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1900140 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

358

Amino Acids

40.02

Weight (kDa)

8.45

Isoelectric Point (pI)

56.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G79700 AT1G79700 AT1G79700 AT1G79700
fragaria_vesca	FvH4_4g08800 FvH4_6g28200 FvH4_6g28200 FvH4_6g28200
malus_domestica	MD09G1228500.v1.1 MD16G1258700.v1.1 MD17G1226700.v1.1
prunus_persica	Prupe.1G101600_v2.0.a1 Prupe.3G104100_v2.0.a1
pyrus_communis	pycom09g14740 pycom17g23010
rosa_chinensis	RchiOBHm_Chr2g0132251 RchiOBHm_Chr4g0405371
rosa_laevigata	RLG00000008847 RLG00000019240
rosa_multiflora	Rmu_sc0006313.1_g000002 Rmu_sc0011487.1_g000002
rosa_roxburghii	Rroxscaffold_2G00112250 Rroxscaffold_5G00349830
rosa_rugosa	Rorug02G0303000 Rorug02G0303000 Rorug04G0057800
rosa_samantha	Rh2AG356200 Rh2BG362600 Rh2CG339700 Rh2DG379500 Rh4AG131300 Rh4BG125900 Rh4CG138400 Rh4DG125400
rosa_wichuraiana	Rw2G028940 Rw4G010640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	893
AccI	GTMKAC	1 cut(s)	900
AccII	CGCG	3 cut(s)	118, 135, 940
AciI	CCGC	5 cut(s)	112, 133, 143, 151, 938
AclI	AACGTT	1 cut(s)	675
AclWI	GGATC	2 cut(s)	16, 421
AcoI	YGGCCR	1 cut(s)	96
AcvI	CACGTG	1 cut(s)	293
AcyI	GRCGYC	2 cut(s)	830, 890
AfaI	GTAC	4 cut(s)	76, 129, 320, 971
AfiI	CCNNNNNNNGG	1 cut(s)	812
AflIII	ACRYGT	1 cut(s)	116
AgsI	TTSAA	5 cut(s)	456, 725, 871, 965, 991
AhdI	GACNNNNNGTC	2 cut(s)	391, 907
AhlI	ACTAGT	2 cut(s)	71, 83
AjuI	GAANNNNNNNTTGG	2 cut(s)	393, 425
AluBI	AGCT	8 cut(s)	45, 156, 206, 284, 373, 572, 578, 996
AluI	AGCT	8 cut(s)	45, 156, 206, 284, 373, 572, 578, 996
Alw21I	GWGCWC	3 cut(s)	158, 375, 782
Alw26I	GTCTC	1 cut(s)	1002
AlwI	GGATC	2 cut(s)	16, 421
Ama87I	CYCGRG	2 cut(s)	769, 881
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	5 cut(s)	284, 287, 308, 569, 590
ArsI	GACNNNNNNTTYG	2 cut(s)	1004, 1036
AspLEI	GCGC	1 cut(s)	942
AsuHPI	GGTGA	1 cut(s)	1038
AvaI	CYCGRG	2 cut(s)	769, 881
BaeGI	GKGCMC	1 cut(s)	662
BanII	GRGCYC	2 cut(s)	158, 375
BauI	CACGAG	1 cut(s)	444
BbrPI	CACGTG	1 cut(s)	293
Bbv12I	GWGCWC	3 cut(s)	158, 375, 782
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	5 cut(s)	271, 274, 320, 581, 602
BccI	CCATC	3 cut(s)	167, 180, 489
BceAI	ACGGC	3 cut(s)	602, 624, 824
BcoDI	GTCTC	1 cut(s)	1002
BcuI	ACTAGT	2 cut(s)	71, 83
BfaI	CTAG	5 cut(s)	48, 72, 84, 783, 842
BfmI	CTRYAG	2 cut(s)	163, 573
BisI	GCNGC	7 cut(s)	133, 285, 288, 309, 570, 591, 938
BlsI	GCNGC	7 cut(s)	134, 286, 289, 310, 571, 592, 939
BmcAI	AGTACT	2 cut(s)	76, 320
BmeRI	GACNNNNNGTC	2 cut(s)	391, 907
BmeT110I	CYCGRG	2 cut(s)	769, 881
BmiI	GGNNCC	2 cut(s)	547, 927
BmrI	ACTGGG	1 cut(s)	331
BmsI	GCATC	2 cut(s)	190, 1060
BmuI	ACTGGG	1 cut(s)	331
BplI	GAGNNNNNCTC	2 cut(s)	1019, 1051
Bpu10I	CCTNAGC	1 cut(s)	147
Bsa29I	ATCGAT	1 cut(s)	184
BsaAI	YACGTR	1 cut(s)	293
BsaHI	GRCGYC	2 cut(s)	830, 890
BsaJI	CCNNGG	3 cut(s)	102, 541, 806
BsaXI	ACNNNNNCTCC	2 cut(s)	415, 445
Bsc4I	CCNNNNNNNGG	1 cut(s)	812
Bse1I	ACTGG	2 cut(s)	326, 350
BseCI	ATCGAT	1 cut(s)	184
BseDI	CCNNGG	3 cut(s)	102, 541, 806
BseLI	CCNNNNNNNGG	1 cut(s)	812
BseMII	CTCAG	2 cut(s)	161, 727
BseNI	ACTGG	2 cut(s)	326, 350
BseRI	GAGGAG	2 cut(s)	183, 436
BseSI	GKGCMC	1 cut(s)	662
BseXI	GCAGC	5 cut(s)	271, 274, 320, 581, 602
BsgI	GTGCAG	2 cut(s)	273, 822
Bsh1236I	CGCG	3 cut(s)	118, 135, 940
BshFI	GGCC	1 cut(s)	98
BshVI	ATCGAT	1 cut(s)	184
BsiHKAI	GWGCWC	3 cut(s)	158, 375, 782
BsiHKCI	CYCGRG	2 cut(s)	769, 881
BsiSI	CCGG	2 cut(s)	95, 943
BslFI	GGGAC	2 cut(s)	339, 844
BslI	CCNNNNNNNGG	1 cut(s)	812
BsmAI	GTCTC	1 cut(s)	1002
BsmBI	CGTCTC	1 cut(s)	1002
BsmFI	GGGAC	2 cut(s)	339, 844
BsnI	GGCC	1 cut(s)	98
BsoBI	CYCGRG	2 cut(s)	769, 881
Bsp1286I	GDGCHC	4 cut(s)	158, 375, 662, 782
Bsp143I	GATC	3 cut(s)	21, 413, 631
BspACI	CCGC	5 cut(s)	112, 133, 143, 151, 938
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	2 cut(s)	160, 726
BspDI	ATCGAT	1 cut(s)	184
BspFNI	CGCG	3 cut(s)	118, 135, 940
BspLI	GGNNCC	2 cut(s)	547, 927
BspPI	GGATC	2 cut(s)	16, 421
BspQI	GCTCTTC	1 cut(s)	363
BsrI	ACTGG	2 cut(s)	326, 350
BssECI	CCNNGG	3 cut(s)	102, 541, 806
BssMI	GATC	3 cut(s)	21, 413, 631
BssNI	GRCGYC	2 cut(s)	830, 890
BssSI	CACGAG	1 cut(s)	444
BssT1I	CCWWGG	2 cut(s)	102, 541
Bst2BI	CACGAG	1 cut(s)	444
Bst4CI	ACNGT	4 cut(s)	227, 389, 657, 905
Bst6I	CTCTTC	3 cut(s)	363, 422, 508
BstACI	GRCGYC	2 cut(s)	830, 890
BstBAI	YACGTR	1 cut(s)	293
BstDEI	CTNAG	5 cut(s)	147, 635, 713, 738, 864
BstDSI	CCRYGG	1 cut(s)	806
BstFNI	CGCG	3 cut(s)	118, 135, 940
BstHHI	GCGC	1 cut(s)	942
BstKTI	GATC	3 cut(s)	24, 416, 634
BstMAI	GTCTC	1 cut(s)	1002
BstMBI	GATC	3 cut(s)	21, 413, 631
BstMWI	GCNNNNNNNGC	6 cut(s)	57, 293, 575, 836, 853, 934
BstNSI	RCATGY	1 cut(s)	937
BstSFI	CTRYAG	2 cut(s)	163, 573
BstSLI	GKGCMC	1 cut(s)	662
BstUI	CGCG	3 cut(s)	118, 135, 940
BstV1I	GCAGC	5 cut(s)	271, 274, 320, 581, 602
BstX2I	RGATCY	1 cut(s)	21
BstXI	CCANNNNNNTGG	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	21
Bsu15I	ATCGAT	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	98
BsuTUI	ATCGAT	1 cut(s)	184
BtgI	CCRYGG	1 cut(s)	806
BtsI	GCAGTG	1 cut(s)	807
BtsIMutI	CAGTG	3 cut(s)	653, 807, 900
CfoI	GCGC	1 cut(s)	942
ClaI	ATCGAT	1 cut(s)	184
CseI	GACGC	3 cut(s)	124, 565, 819
Csp6I	GTAC	4 cut(s)	75, 128, 319, 970
CviAII	CATG	2 cut(s)	586, 934
CviQI	GTAC	4 cut(s)	75, 128, 319, 970
DdeI	CTNAG	5 cut(s)	147, 635, 713, 738, 864
DpnI	GATC	3 cut(s)	23, 415, 633
DpnII	GATC	3 cut(s)	21, 413, 631
DriI	GACNNNNNGTC	2 cut(s)	391, 907
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	3 cut(s)	363, 422, 508
Eam1105I	GACNNNNNGTC	2 cut(s)	391, 907
EarI	CTCTTC	3 cut(s)	363, 422, 508
EciI	GGCGGA	1 cut(s)	132
Ecl136II	GAGCTC	2 cut(s)	156, 373
Eco130I	CCWWGG	2 cut(s)	102, 541
Eco24I	GRGCYC	2 cut(s)	158, 375
Eco53kI	GAGCTC	2 cut(s)	156, 373
Eco72I	CACGTG	1 cut(s)	293
Eco88I	CYCGRG	2 cut(s)	769, 881
EcoICRI	GAGCTC	2 cut(s)	156, 373
EcoT14I	CCWWGG	2 cut(s)	102, 541
EcoT38I	GRGCYC	2 cut(s)	158, 375
ErhI	CCWWGG	2 cut(s)	102, 541
Esp3I	CGTCTC	1 cut(s)	1002
FaeI	CATG	2 cut(s)	589, 937
FaqI	GGGAC	2 cut(s)	339, 844
FatI	CATG	2 cut(s)	585, 933
FauNDI	CATATG	1 cut(s)	268
FblI	GTMKAC	1 cut(s)	900
Fnu4HI	GCNGC	7 cut(s)	133, 285, 288, 309, 570, 591, 938
FriOI	GRGCYC	2 cut(s)	158, 375
Fsp4HI	GCNGC	7 cut(s)	133, 285, 288, 309, 570, 591, 938
FspBI	CTAG	5 cut(s)	48, 72, 84, 783, 842
GlaI	GCGC	1 cut(s)	941
GluI	GCNGC	7 cut(s)	133, 285, 288, 309, 570, 591, 938
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	2 cut(s)	95, 943
HgaI	GACGC	3 cut(s)	124, 565, 819
HhaI	GCGC	1 cut(s)	942
Hin1I	GRCGYC	2 cut(s)	830, 890
Hin1II	CATG	2 cut(s)	589, 937
Hin6I	GCGC	1 cut(s)	940
HinP1I	GCGC	1 cut(s)	940
HincII	GTYRAC	1 cut(s)	912
HindII	GTYRAC	1 cut(s)	912
HinfI	GANTC	7 cut(s)	137, 171, 236, 721, 734, 772, 788
HpaII	CCGG	2 cut(s)	95, 943
HphI	GGTGA	1 cut(s)	1038
Hpy166II	GTNNAC	5 cut(s)	128, 608, 901, 912, 1064
Hpy188I	TCNGA	1 cut(s)	777
Hpy188III	TCNNGA	2 cut(s)	883, 983
Hpy8I	GTNNAC	5 cut(s)	128, 608, 901, 912, 1064
Hpy99I	CGWCG	3 cut(s)	559, 829, 919
HpyAV	CCTTC	1 cut(s)	998
HpyCH4III	ACNGT	4 cut(s)	227, 389, 657, 905
HpyCH4IV	ACGT	4 cut(s)	292, 675, 890, 968
HpyCH4V	TGCA	4 cut(s)	290, 839, 856, 1001
HpyF10VI	GCNNNNNNNGC	6 cut(s)	57, 293, 575, 836, 853, 934
HpyF3I	CTNAG	5 cut(s)	147, 635, 713, 738, 864
HpySE526I	ACGT	4 cut(s)	292, 675, 890, 968
Hsp92I	GRCGYC	2 cut(s)	830, 890
Hsp92II	CATG	2 cut(s)	589, 937
HspAI	GCGC	1 cut(s)	940
Kzo9I	GATC	3 cut(s)	21, 413, 631
LguI	GCTCTTC	1 cut(s)	363
LmnI	GCTCC	3 cut(s)	153, 161, 925
LpnPI	CCDG	7 cut(s)	108, 307, 363, 744, 797, 956, 1062
Lsp1109I	GCAGC	5 cut(s)	271, 274, 320, 581, 602
LweI	GCATC	2 cut(s)	190, 1060
MaeI	CTAG	5 cut(s)	48, 72, 84, 783, 842
MaeII	ACGT	4 cut(s)	292, 675, 890, 968
MaeIII	GTNAC	5 cut(s)	172, 237, 619, 641, 651
MalI	GATC	3 cut(s)	23, 415, 633
MboI	GATC	3 cut(s)	21, 413, 631
MboII	GAAGA	8 cut(s)	31, 290, 380, 413, 439, 504, 525, 575
MflI	RGATCY	1 cut(s)	21
MhlI	GDGCHC	4 cut(s)	158, 375, 662, 782
MluCI	AATT	2 cut(s)	343, 507
MluI	ACGCGT	1 cut(s)	116
MlyI	GAGTC	5 cut(s)	131, 180, 245, 781, 797
MmeI	TCCRAC	1 cut(s)	209
MseI	TTAA	3 cut(s)	314, 612, 1031
MslI	CAYNNNNRTG	1 cut(s)	486
MspA1I	CMGCKG	1 cut(s)	151
MspI	CCGG	2 cut(s)	95, 943
MvnI	CGCG	3 cut(s)	118, 135, 940
MwoI	GCNNNNNNNGC	6 cut(s)	57, 293, 575, 836, 853, 934
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	3 cut(s)	21, 413, 631
NlaIII	CATG	2 cut(s)	589, 937
NlaIV	GGNNCC	2 cut(s)	547, 927
NmuCI	GTSAC	3 cut(s)	172, 237, 651
NspI	RCATGY	1 cut(s)	937
PaeR7I	CTCGAG	1 cut(s)	881
PciSI	GCTCTTC	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	1 cut(s)	914
PfeI	GAWTC	2 cut(s)	721, 734
PkrI	GCNGC	7 cut(s)	134, 286, 289, 310, 571, 592, 939
PleI	GAGTC	5 cut(s)	131, 179, 244, 780, 796
PmaCI	CACGTG	1 cut(s)	293
PmlI	CACGTG	1 cut(s)	293
PpsI	GAGTC	5 cut(s)	131, 179, 244, 780, 796
Ppu21I	YACGTR	1 cut(s)	293
Psp124BI	GAGCTC	2 cut(s)	158, 375
Psp1406I	AACGTT	1 cut(s)	675
PspCI	CACGTG	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	547, 927
PsuI	RGATCY	1 cut(s)	21
RsaI	GTAC	4 cut(s)	76, 129, 320, 971
RsaNI	GTAC	4 cut(s)	75, 128, 319, 970
RseI	CAYNNNNRTG	1 cut(s)	486
SacI	GAGCTC	2 cut(s)	158, 375
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	3 cut(s)	314, 612, 1031
SatI	GCNGC	7 cut(s)	133, 285, 288, 309, 570, 591, 938
Sau3AI	GATC	3 cut(s)	21, 413, 631
ScaI	AGTACT	2 cut(s)	76, 320
SchI	GAGTC	5 cut(s)	131, 180, 245, 781, 797
SduI	GDGCHC	4 cut(s)	158, 375, 662, 782
SfaNI	GCATC	2 cut(s)	190, 1060
SfcI	CTRYAG	2 cut(s)	163, 573
Sfr274I	CTCGAG	1 cut(s)	881
SlaI	CTCGAG	1 cut(s)	881
SmiMI	CAYNNNNRTG	1 cut(s)	486
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
SpeI	ACTAGT	2 cut(s)	71, 83
Sse9I	AATT	2 cut(s)	343, 507
SsiI	CCGC	5 cut(s)	112, 133, 143, 151, 938
SspMI	CTAG	5 cut(s)	48, 72, 84, 783, 842
SstI	GAGCTC	2 cut(s)	158, 375
StyI	CCWWGG	2 cut(s)	102, 541
TaaI	ACNGT	4 cut(s)	227, 389, 657, 905
TaiI	ACGT	4 cut(s)	295, 678, 893, 971
TaqI	TCGA	5 cut(s)	184, 505, 630, 719, 882
TasI	AATT	2 cut(s)	343, 507
TatI	WGTACW	2 cut(s)	74, 318
TauI	GCSGC	2 cut(s)	135, 940
TfiI	GAWTC	2 cut(s)	721, 734
Tru1I	TTAA	3 cut(s)	314, 612, 1031
Tru9I	TTAA	3 cut(s)	314, 612, 1031
TscAI	CASTG	3 cut(s)	660, 807, 900
TseFI	GTSAC	3 cut(s)	172, 237, 651
TseI	GCWGC	5 cut(s)	284, 287, 308, 569, 590
Tsp45I	GTSAC	3 cut(s)	172, 237, 651
TspDTI	ATGAA	3 cut(s)	216, 291, 1046
TspRI	CASTG	3 cut(s)	660, 807, 900
XceI	RCATGY	1 cut(s)	937
XhoI	CTCGAG	1 cut(s)	881
XmiI	GTMKAC	1 cut(s)	900
XspI	CTAG	5 cut(s)	48, 72, 84, 783, 842
ZraI	GACGTC	1 cut(s)	891
ZrmI	AGTACT	2 cut(s)	76, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.