Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004807

Physical Location & Seq

Genomic Coordinates Forward (+)

8143227 .. 8145174

Gene Structure 1948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G23000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGACTAAAGATGAAGACTTTAAGCTCCTAAAGATCCAGACGTTTTCACTCAGAGTCAACATTCACTGCGAGGGCTGTAACAAGAAAGTCAAGAAACTTCTTCAGAGGATCGAAGGAGTTTGCCACGTGAAGATAGAAGCAGAACATCAAAAGGTGACTGTTTCAGGGTCAGTTGACTCAGCCACACTCATCAACAAGCTTGTTAAAGCCGGGAAACACGCCGAGCTTTGGTCTCCTAACCCAAACCAAAACCAGCCTCAAAAGCCCAAGACTAACGACTTCATCAAGAACGTTAATCAAAAGGGTCAGAAGCAGGGGTCTGCCAAAAGTGGTATTGAAGCCTGTAAACCCAAGAACGGCCCTAAAGGTGCAGCCTTTGTAGCTGAGGAAGATGGAGATGGCAGTGAAGAGGAAGACGGAGATGTCCAGTTTCCTAAACCGGCGAATCAGCAGCAGCAACAAAACGTCGTCAACGCCAAGAAAAACAGTGGAGGAGCTGCGATGAACAATGGAAACAACGGAGTCAACGCAGCATCAAAGAAAGTCAACCAAAAACAGAGCAACCATAACCAGAACACTCAACAAGTAATGGCGGCTATGAGAATGAGAACCGCCGGGAAAATGAGCACTGGTGTTGAAGCCAACGAGATTGGAGCTCTCATGGGTCTTGCTGGCTTCAACGGCGCAACCAACGCAGTGAATCACCCTCCAAATGGGATTCAACAACAGCTTCAAGCTCCACCGTTAAACAACGTCAACGGCGTCACTAATCACAACCTCACCAATAGTAATGGAGGCATGATGATGAACATGAATGGGTACAATAATCATCATCCAATGAACATGCAGAGTAGGCAAATGATGCATCAGCCTCAGCAAATGATGTACCAAAGATCATCTTTCGTTCCAGCATCAAGCAATGGGTATTATTACAATTATACCCCTAGTCCCTACAGTTATTATCCTTATTACCCTTACGCAAGTGATCAGTACCAACAACAAAGTAGTCATTCACATGCAACAAACATGTCTAGTGAAGAAGACGCTGGTAATAACAATAGCTGCAACATCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

358

Amino Acids

39.31

Weight (kDa)

9.07

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	17 - 73	2e-14	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23000 AT1G23000
fragaria_vesca	FvH4_4g32260
malus_domestica	MD16G1029800.v1.1
prunus_persica	Prupe.1G323100_v2.0.a1 Prupe.3G152200_v2.0.a1
pyrus_communis	pycom05g25530 pycom13g02530 pycom16g02540
rosa_chinensis	RchiOBHm_Chr4g0441051
rosa_laevigata	RLG00000006124 RLG00000010191 RLG00000010192
rosa_multiflora	Rmu_sc0000424.1_g000043 Rmu_sc0002157.1_g000027 Rmu_sc0002157.1_g000028 Rmu_sc0007363.1_g000002 Rmu_sc0009497.1_g000005 Rmu_sc0024852.1_g000001 Rmu_sc0039859.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381970
rosa_rugosa	Rorug03G0304900 Rorug04G0330400
rosa_samantha	Rh2DG461600 Rh4AG008900 Rh4AG382100 Rh4BG395700 Rh4CG410800 Rh4DG388800
rosa_wichuraiana	Rw4G000240 Rw4G032960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	422
AciI	CCGC	2 cut(s)	593, 612
AclI	AACGTT	1 cut(s)	291
AclWI	GGATC	2 cut(s)	28, 116
AcuI	CTGAAG	1 cut(s)	86
AcvI	CACGTG	1 cut(s)	127
AcyI	GRCGYC	1 cut(s)	762
AfaI	GTAC	3 cut(s)	821, 887, 992
AfiI	CCNNNNNNNGG	3 cut(s)	228, 356, 713
AflIII	ACRYGT	1 cut(s)	1026
AgsI	TTSAA	5 cut(s)	338, 638, 679, 722, 734
AluBI	AGCT	9 cut(s)	25, 199, 226, 383, 497, 656, 730, 737, 1062
AluI	AGCT	9 cut(s)	25, 199, 226, 383, 497, 656, 730, 737, 1062
Alw21I	GWGCWC	2 cut(s)	629, 658
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	2 cut(s)	28, 116
AoxI	GGCC	1 cut(s)	358
ApeKI	GCWGC	6 cut(s)	371, 451, 454, 497, 530, 1062
AspLEI	GCGC	1 cut(s)	686
AspS9I	GGNCC	1 cut(s)	359
AsuC2I	CCSGG	2 cut(s)	211, 616
AsuHPI	GGTGA	3 cut(s)	166, 695, 772
BanII	GRGCYC	1 cut(s)	658
BbrPI	CACGTG	1 cut(s)	127
BbsI	GAAGAC	3 cut(s)	21, 420, 1047
Bbv12I	GWGCWC	2 cut(s)	629, 658
BbvCI	CCTCAGC	2 cut(s)	384, 873
BbvI	GCAGC	6 cut(s)	383, 463, 466, 484, 542, 1049
BccI	CCATC	2 cut(s)	386, 392
BceAI	ACGGC	3 cut(s)	373, 697, 775
BclI	TGATCA	1 cut(s)	985
BcnI	CCSGG	2 cut(s)	211, 616
BcoDI	GTCTC	1 cut(s)	237
BfaI	CTAG	2 cut(s)	945, 1032
BfmI	CTRYAG	1 cut(s)	952
BisI	GCNGC	7 cut(s)	372, 452, 455, 498, 531, 594, 1063
BlsI	GCNGC	7 cut(s)	373, 453, 456, 499, 532, 595, 1064
Bme1390I	CCNGG	2 cut(s)	211, 616
BmgT120I	GGNCC	1 cut(s)	359
BmrFI	CCNGG	2 cut(s)	211, 616
BmsI	GCATC	4 cut(s)	542, 852, 874, 920
BpiI	GAAGAC	3 cut(s)	21, 420, 1047
Bpu10I	CCTNAGC	2 cut(s)	384, 873
BpuMI	CCSGG	2 cut(s)	211, 616
BsaAI	YACGTR	1 cut(s)	127
BsaHI	GRCGYC	1 cut(s)	762
BsaI	GGTCTC	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	3 cut(s)	228, 356, 713
Bse118I	RCCGGY	1 cut(s)	439
Bse1I	ACTGG	2 cut(s)	427, 634
Bse3DI	GCAATG	1 cut(s)	925
BseGI	GGATG	1 cut(s)	832
BseLI	CCNNNNNNNGG	3 cut(s)	228, 356, 713
BseMI	GCAATG	1 cut(s)	925
BseMII	CTCAG	4 cut(s)	64, 192, 375, 887
BseNI	ACTGG	2 cut(s)	427, 634
BseRI	GAGGAG	1 cut(s)	507
BseXI	GCAGC	6 cut(s)	383, 463, 466, 484, 542, 1049
BsgI	GTGCAG	1 cut(s)	390
BshFI	GGCC	1 cut(s)	360
BsiHKAI	GWGCWC	2 cut(s)	629, 658
BsiSI	CCGG	3 cut(s)	210, 440, 615
BslFI	GGGAC	1 cut(s)	933
BslI	CCNNNNNNNGG	3 cut(s)	228, 356, 713
BsmAI	GTCTC	1 cut(s)	237
BsmFI	GGGAC	1 cut(s)	933
BsnI	GGCC	1 cut(s)	360
Bso31I	GGTCTC	1 cut(s)	237
Bsp1286I	GDGCHC	2 cut(s)	629, 658
Bsp143I	GATC	4 cut(s)	33, 108, 893, 985
BspACI	CCGC	2 cut(s)	593, 612
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	4 cut(s)	63, 191, 376, 886
BspPI	GGATC	2 cut(s)	28, 116
BspTNI	GGTCTC	1 cut(s)	237
BsrDI	GCAATG	1 cut(s)	925
BsrFI	RCCGGY	1 cut(s)	439
BsrI	ACTGG	2 cut(s)	427, 634
BssAI	RCCGGY	1 cut(s)	439
BssMI	GATC	4 cut(s)	33, 108, 893, 985
BssNI	GRCGYC	1 cut(s)	762
Bst4CI	ACNGT	4 cut(s)	160, 488, 744, 956
Bst6I	CTCTTC	1 cut(s)	402
BstACI	GRCGYC	1 cut(s)	762
BstAPI	GCANNNNNTGC	1 cut(s)	862
BstBAI	YACGTR	1 cut(s)	127
BstC8I	GCNNGC	1 cut(s)	673
BstDEI	CTNAG	4 cut(s)	50, 178, 384, 873
BstF5I	GGATG	1 cut(s)	832
BstHHI	GCGC	1 cut(s)	686
BstKTI	GATC	4 cut(s)	36, 111, 896, 988
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	4 cut(s)	33, 108, 893, 985
BstMWI	GCNNNNNNNGC	6 cut(s)	262, 380, 681, 692, 853, 862
BstNSI	RCATGY	3 cut(s)	847, 1019, 1030
BstSCI	CCNGG	2 cut(s)	209, 614
BstSFI	CTRYAG	1 cut(s)	952
BstV1I	GCAGC	6 cut(s)	383, 463, 466, 484, 542, 1049
BstV2I	GAAGAC	3 cut(s)	21, 420, 1047
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	360
BtgZI	GCGATG	1 cut(s)	515
BtsCI	GGATG	1 cut(s)	832
BtsI	GCAGTG	3 cut(s)	64, 409, 702
BtsIMutI	CAGTG	5 cut(s)	64, 409, 493, 627, 702
Cac8I	GCNNGC	1 cut(s)	673
CfoI	GCGC	1 cut(s)	686
Cfr10I	RCCGGY	1 cut(s)	439
Cfr13I	GGNCC	1 cut(s)	359
CseI	GACGC	2 cut(s)	751, 1052
Csp6I	GTAC	3 cut(s)	820, 886, 991
CviAII	CATG	7 cut(s)	661, 799, 811, 844, 1016, 1027, 1072
CviQI	GTAC	3 cut(s)	820, 886, 991
DdeI	CTNAG	4 cut(s)	50, 178, 384, 873
DpnI	GATC	4 cut(s)	35, 110, 895, 987
DpnII	GATC	4 cut(s)	33, 108, 893, 985
DrdI	GACNNNNNNGTC	1 cut(s)	422
DseDI	GACNNNNNNGTC	1 cut(s)	422
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Ecl136II	GAGCTC	1 cut(s)	656
Eco24I	GRGCYC	1 cut(s)	658
Eco31I	GGTCTC	1 cut(s)	237
Eco53kI	GAGCTC	1 cut(s)	656
Eco57I	CTGAAG	1 cut(s)	86
Eco72I	CACGTG	1 cut(s)	127
EcoICRI	GAGCTC	1 cut(s)	656
EcoT22I	ATGCAT	1 cut(s)	867
EcoT38I	GRGCYC	1 cut(s)	658
FaeI	CATG	7 cut(s)	664, 802, 814, 847, 1019, 1030, 1075
FalI	AAGNNNNNCTT	2 cut(s)	883, 915
FaqI	GGGAC	1 cut(s)	933
FatI	CATG	7 cut(s)	660, 798, 810, 843, 1015, 1026, 1071
FbaI	TGATCA	1 cut(s)	985
Fnu4HI	GCNGC	7 cut(s)	372, 452, 455, 498, 531, 594, 1063
FokI	GGATG	1 cut(s)	819
FriOI	GRGCYC	1 cut(s)	658
Fsp4HI	GCNGC	7 cut(s)	372, 452, 455, 498, 531, 594, 1063
FspBI	CTAG	2 cut(s)	945, 1032
GlaI	GCGC	1 cut(s)	685
GluI	GCNGC	7 cut(s)	372, 452, 455, 498, 531, 594, 1063
HaeIII	GGCC	1 cut(s)	360
HapII	CCGG	3 cut(s)	210, 440, 615
HgaI	GACGC	2 cut(s)	751, 1052
HhaI	GCGC	1 cut(s)	686
Hin1I	GRCGYC	1 cut(s)	762
Hin1II	CATG	7 cut(s)	664, 802, 814, 847, 1019, 1030, 1075
Hin6I	GCGC	1 cut(s)	684
HinP1I	GCGC	1 cut(s)	684
HincII	GTYRAC	6 cut(s)	58, 175, 472, 526, 547, 757
HindII	GTYRAC	6 cut(s)	58, 175, 472, 526, 547, 757
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	6 cut(s)	54, 176, 445, 522, 700, 718
HpaII	CCGG	3 cut(s)	210, 440, 615
HphI	GGTGA	3 cut(s)	166, 695, 772
Hpy166II	GTNNAC	7 cut(s)	58, 175, 347, 472, 526, 547, 757
Hpy188I	TCNGA	3 cut(s)	53, 105, 309
Hpy188III	TCNNGA	3 cut(s)	37, 91, 286
Hpy8I	GTNNAC	7 cut(s)	58, 175, 347, 472, 526, 547, 757
Hpy99I	CGWCG	1 cut(s)	470
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	4 cut(s)	160, 488, 744, 956
HpyCH4IV	ACGT	5 cut(s)	41, 126, 291, 465, 753
HpyCH4V	TGCA	5 cut(s)	371, 847, 865, 1019, 1065
HpyF10VI	GCNNNNNNNGC	6 cut(s)	262, 380, 681, 692, 853, 862
HpyF3I	CTNAG	4 cut(s)	50, 178, 384, 873
HpySE526I	ACGT	5 cut(s)	41, 126, 291, 465, 753
Hsp92I	GRCGYC	1 cut(s)	762
Hsp92II	CATG	7 cut(s)	664, 802, 814, 847, 1019, 1030, 1075
HspAI	GCGC	1 cut(s)	684
Ksp22I	TGATCA	1 cut(s)	985
Kzo9I	GATC	4 cut(s)	33, 108, 893, 985
LmnI	GCTCC	4 cut(s)	30, 494, 653, 742
Lsp1109I	GCAGC	6 cut(s)	383, 463, 466, 484, 542, 1049
LweI	GCATC	4 cut(s)	542, 852, 874, 920
MaeI	CTAG	2 cut(s)	945, 1032
MaeII	ACGT	5 cut(s)	41, 126, 291, 465, 753
MaeIII	GTNAC	3 cut(s)	77, 154, 763
MalI	GATC	4 cut(s)	35, 110, 895, 987
MboI	GATC	4 cut(s)	33, 108, 893, 985
MboII	GAAGA	8 cut(s)	26, 92, 142, 401, 419, 425, 1049, 1052
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	2 cut(s)	629, 658
MluCI	AATT	1 cut(s)	934
MlyI	GAGTC	3 cut(s)	63, 170, 531
Mph1103I	ATGCAT	1 cut(s)	867
MseI	TTAA	4 cut(s)	21, 204, 294, 746
MslI	CAYNNNNRTG	2 cut(s)	803, 1014
MspI	CCGG	3 cut(s)	210, 440, 615
MspR9I	CCNGG	2 cut(s)	211, 616
MwoI	GCNNNNNNNGC	6 cut(s)	262, 380, 681, 692, 853, 862
NciI	CCSGG	2 cut(s)	211, 616
NdeII	GATC	4 cut(s)	33, 108, 893, 985
NlaIII	CATG	7 cut(s)	664, 802, 814, 847, 1019, 1030, 1075
NmeAIII	GCCGAG	1 cut(s)	247
NmuCI	GTSAC	2 cut(s)	154, 763
NsiI	ATGCAT	1 cut(s)	867
NspI	RCATGY	3 cut(s)	847, 1019, 1030
PciI	ACATGT	1 cut(s)	1026
PcsI	WCGNNNNNNNCGW	1 cut(s)	759
PfeI	GAWTC	3 cut(s)	445, 700, 718
PkrI	GCNGC	7 cut(s)	373, 453, 456, 499, 532, 595, 1064
PleI	GAGTC	3 cut(s)	62, 170, 530
PmaCI	CACGTG	1 cut(s)	127
PmlI	CACGTG	1 cut(s)	127
PpsI	GAGTC	3 cut(s)	62, 170, 530
Ppu21I	YACGTR	1 cut(s)	127
PscI	ACATGT	1 cut(s)	1026
Psp124BI	GAGCTC	1 cut(s)	658
Psp1406I	AACGTT	1 cut(s)	291
PspCI	CACGTG	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	33
RsaI	GTAC	3 cut(s)	821, 887, 992
RsaNI	GTAC	3 cut(s)	820, 886, 991
RseI	CAYNNNNRTG	2 cut(s)	803, 1014
SacI	GAGCTC	1 cut(s)	658
SaqAI	TTAA	4 cut(s)	21, 204, 294, 746
SatI	GCNGC	7 cut(s)	372, 452, 455, 498, 531, 594, 1063
Sau3AI	GATC	4 cut(s)	33, 108, 893, 985
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	3 cut(s)	63, 170, 531
ScrFI	CCNGG	2 cut(s)	211, 616
SduI	GDGCHC	2 cut(s)	629, 658
SfaNI	GCATC	4 cut(s)	542, 852, 874, 920
SfcI	CTRYAG	1 cut(s)	952
SmiMI	CAYNNNNRTG	2 cut(s)	803, 1014
Sse9I	AATT	1 cut(s)	934
SsiI	CCGC	2 cut(s)	593, 612
SspMI	CTAG	2 cut(s)	945, 1032
SstI	GAGCTC	1 cut(s)	658
StyD4I	CCNGG	2 cut(s)	209, 614
TaaI	ACNGT	4 cut(s)	160, 488, 744, 956
TaiI	ACGT	5 cut(s)	44, 129, 294, 468, 756
TaqI	TCGA	1 cut(s)	111
TasI	AATT	1 cut(s)	934
TauI	GCSGC	1 cut(s)	596
TfiI	GAWTC	3 cut(s)	445, 700, 718
Tru1I	TTAA	4 cut(s)	21, 204, 294, 746
Tru9I	TTAA	4 cut(s)	21, 204, 294, 746
TscAI	CASTG	5 cut(s)	71, 409, 493, 634, 702
TseFI	GTSAC	2 cut(s)	154, 763
TseI	GCWGC	6 cut(s)	371, 451, 454, 497, 530, 1062
Tsp45I	GTSAC	2 cut(s)	154, 763
TspDTI	ATGAA	6 cut(s)	27, 271, 518, 821, 827, 854
TspGWI	ACGGA	2 cut(s)	432, 534
TspRI	CASTG	5 cut(s)	71, 409, 493, 634, 702
XceI	RCATGY	3 cut(s)	847, 1019, 1030
XspI	CTAG	2 cut(s)	945, 1032
Zsp2I	ATGCAT	1 cut(s)	867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.