Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004807

Physical Location & Seq

Genomic Coordinates Forward (+)

26895635 .. 26897070

Gene Structure 1436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g25530.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTCGTCGACATTTGATTTTGATTTCTTCAGTATCCAGACGCATGTTCTGAAAGTGCACGTTAACTGTGAAGGATGTGAGCAGAAAGTGAAAAAACTCCTCCGGAAGATCCAAGGTGTTTATAGTGTAAACGTAGAAGCAGAAGAAGAGAAGATCACAGTGATAGGAAACGTAGAATTTGCTACTTTAATTAGAAAGTTGGCGAGAGCAGGCAAACATGCAGAGCCTTGGTCTCCAAGTTCCGACCAACAAATGATCAACACCAACAGAGATCCCAGAAGAAACAAGCACCACCGCCAACCACCACCAAATATGATTGGCGGTGAAGAACTATATGATGAATTCGACCCCATTTTTGTGGGTGGAAATGGAAATGCAATTGGAGCTGATGGCAATGTTTTTTCTGTGATGGGCAATAATGCAAGTTTTCGTGGCAATGGAGGACTTGGATTTGCAGAATTTCCCAACTCACACTCACACCACCACCACACTAATTCTACATCTCCTCCTCCTTTCATGGTTCCTACCAACGCTGAAGCTTTCTATGGTGTTCAATTTGCACCAACATGGAACGCCCAAGGCGAGCATTACGGTGGTAACAGCGACACCAACGCCGAGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

208

Amino Acids

22.83

Weight (kDa)

5.97

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23000 AT1G23000
fragaria_vesca	FvH4_4g32260
malus_domestica	MD16G1029800.v1.1
prunus_persica	Prupe.1G323100_v2.0.a1 Prupe.3G152200_v2.0.a1
pyrus_communis	pycom05g25530 pycom13g02530 pycom16g02540
rosa_chinensis	RchiOBHm_Chr4g0441051
rosa_laevigata	RLG00000006124 RLG00000010191 RLG00000010192
rosa_multiflora	Rmu_sc0000424.1_g000043 Rmu_sc0002157.1_g000027 Rmu_sc0002157.1_g000028 Rmu_sc0007363.1_g000002 Rmu_sc0009497.1_g000005 Rmu_sc0024852.1_g000001 Rmu_sc0039859.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381970
rosa_rugosa	Rorug03G0304900 Rorug04G0330400
rosa_samantha	Rh2DG461600 Rh4AG008900 Rh4AG382100 Rh4BG395700 Rh4CG410800 Rh4DG388800
rosa_wichuraiana	Rw4G000240 Rw4G032960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	8
AccIII	TCCGGA	1 cut(s)	102
AciI	CCGC	2 cut(s)	295, 321
AclWI	GGATC	2 cut(s)	103, 266
AcsI	RAATTY	3 cut(s)	176, 341, 458
AcuI	CTGAAG	2 cut(s)	13, 555
AgsI	TTSAA	1 cut(s)	554
AluBI	AGCT	2 cut(s)	386, 539
AluI	AGCT	2 cut(s)	386, 539
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	1 cut(s)	237
Alw44I	GTGCAC	1 cut(s)	56
AlwI	GGATC	2 cut(s)	103, 266
Aor13HI	TCCGGA	1 cut(s)	102
ApaLI	GTGCAC	1 cut(s)	56
ApoI	RAATTY	3 cut(s)	176, 341, 458
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
AsuHPI	GGTGA	1 cut(s)	335
BaeGI	GKGCMC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	60
BccI	CCATC	2 cut(s)	383, 403
BciVI	GTATCC	1 cut(s)	44
BclI	TGATCA	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	237
BfuI	GTATCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	522
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	4 cut(s)	112, 227, 577, 615
BsaWI	WCCGGW	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	490, 520
Bse3DI	GCAATG	2 cut(s)	400, 442
BseAI	TCCGGA	1 cut(s)	102
BseDI	CCNNGG	4 cut(s)	112, 227, 577, 615
BseGI	GGATG	1 cut(s)	80
BseMI	GCAATG	2 cut(s)	400, 442
BseRI	GAGGAG	3 cut(s)	89, 495, 498
BseSI	GKGCMC	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	237
Bso31I	GGTCTC	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp13I	TCCGGA	1 cut(s)	102
Bsp143I	GATC	4 cut(s)	108, 153, 255, 271
BspACI	CCGC	2 cut(s)	295, 321
BspEI	TCCGGA	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	522
BspPI	GGATC	2 cut(s)	103, 266
BspTNI	GGTCTC	1 cut(s)	237
BsrDI	GCAATG	2 cut(s)	400, 442
BssECI	CCNNGG	4 cut(s)	112, 227, 577, 615
BssMI	GATC	4 cut(s)	108, 153, 255, 271
BssT1I	CCWWGG	3 cut(s)	112, 227, 577
Bst4CI	ACNGT	3 cut(s)	68, 160, 593
Bst6I	CTCTTC	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	211, 584
BstF5I	GGATG	1 cut(s)	80
BstKTI	GATC	4 cut(s)	111, 156, 258, 274
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	4 cut(s)	108, 153, 255, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstNSI	RCATGY	2 cut(s)	47, 221
BstSLI	GKGCMC	1 cut(s)	60
BstX2I	RGATCY	2 cut(s)	108, 271
BstXI	CCANNNNNNTGG	1 cut(s)	358
BstYI	RGATCY	2 cut(s)	108, 271
BsuI	GTATCC	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	2 cut(s)	211, 584
CseI	GACGC	1 cut(s)	49
CviAII	CATG	4 cut(s)	44, 218, 517, 567
CviJI	RGCY	3 cut(s)	226, 386, 539
CviKI_1	RGCY	3 cut(s)	226, 386, 539
DpnI	GATC	4 cut(s)	110, 155, 257, 273
DpnII	GATC	4 cut(s)	108, 153, 255, 271
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco130I	CCWWGG	3 cut(s)	112, 227, 577
Eco31I	GGTCTC	1 cut(s)	237
Eco57I	CTGAAG	2 cut(s)	13, 555
EcoRI	GAATTC	1 cut(s)	341
EcoT14I	CCWWGG	3 cut(s)	112, 227, 577
ErhI	CCWWGG	3 cut(s)	112, 227, 577
FaeI	CATG	4 cut(s)	47, 221, 520, 570
FaiI	YATR	9 cut(s)	45, 123, 219, 314, 334, 336, 518, 546, 568
FatI	CATG	4 cut(s)	43, 217, 516, 566
FbaI	TGATCA	1 cut(s)	255
FblI	GTMKAC	1 cut(s)	8
FokI	GGATG	1 cut(s)	87
HapII	CCGG	1 cut(s)	103
HgaI	GACGC	1 cut(s)	49
Hin1II	CATG	4 cut(s)	47, 221, 520, 570
HincII	GTYRAC	2 cut(s)	9, 64
HindII	GTYRAC	2 cut(s)	9, 64
HindIII	AAGCTT	1 cut(s)	537
HpaI	GTTAAC	1 cut(s)	64
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	4 cut(s)	9, 58, 64, 130
Hpy188I	TCNGA	2 cut(s)	51, 244
Hpy188III	TCNNGA	2 cut(s)	37, 103
Hpy8I	GTNNAC	4 cut(s)	9, 58, 64, 130
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	65
HpyCH4III	ACNGT	3 cut(s)	68, 160, 593
HpyCH4IV	ACGT	3 cut(s)	60, 132, 171
HpyCH4V	TGCA	6 cut(s)	58, 221, 377, 422, 455, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpySE526I	ACGT	3 cut(s)	60, 132, 171
Hsp92II	CATG	4 cut(s)	47, 221, 520, 570
Kpn2I	TCCGGA	1 cut(s)	102
Ksp22I	TGATCA	1 cut(s)	255
KspAI	GTTAAC	1 cut(s)	64
Kzo9I	GATC	4 cut(s)	108, 153, 255, 271
LmnI	GCTCC	1 cut(s)	383
LpnPI	CCDG	4 cut(s)	50, 116, 195, 289
MaeII	ACGT	3 cut(s)	60, 132, 171
MaeIII	GTNAC	1 cut(s)	596
MalI	GATC	4 cut(s)	110, 155, 257, 273
MboI	GATC	4 cut(s)	108, 153, 255, 271
MboII	GAAGA	7 cut(s)	19, 118, 155, 158, 163, 291, 338
MfeI	CAATTG	1 cut(s)	378
MflI	RGATCY	2 cut(s)	108, 271
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	7 cut(s)	176, 189, 341, 378, 458, 493, 554
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	5 cut(s)	110, 434, 516, 519, 610
MroI	TCCGGA	1 cut(s)	102
MseI	TTAA	2 cut(s)	63, 188
MslI	CAYNNNNRTG	3 cut(s)	356, 565, 591
MspI	CCGG	1 cut(s)	103
MunI	CAATTG	1 cut(s)	378
MwoI	GCNNNNNNNGC	1 cut(s)	383
NdeII	GATC	4 cut(s)	108, 153, 255, 271
NlaIII	CATG	4 cut(s)	47, 221, 520, 570
NlaIV	GGNNCC	1 cut(s)	522
NspI	RCATGY	2 cut(s)	47, 221
PcsI	WCGNNNNNNNCGW	1 cut(s)	579
PspN4I	GGNNCC	1 cut(s)	522
PsuI	RGATCY	2 cut(s)	108, 271
RseI	CAYNNNNRTG	3 cut(s)	356, 565, 591
SalI	GTCGAC	1 cut(s)	7
SaqAI	TTAA	2 cut(s)	63, 188
Sau3AI	GATC	4 cut(s)	108, 153, 255, 271
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	6 cut(s)	63, 118, 135, 174, 388, 541
SmiMI	CAYNNNNRTG	3 cut(s)	356, 565, 591
Sse9I	AATT	7 cut(s)	176, 189, 341, 378, 458, 493, 554
SsiI	CCGC	2 cut(s)	295, 321
StyI	CCWWGG	3 cut(s)	112, 227, 577
TaaI	ACNGT	3 cut(s)	68, 160, 593
TaiI	ACGT	3 cut(s)	63, 135, 174
TaqI	TCGA	2 cut(s)	8, 345
TasI	AATT	7 cut(s)	176, 189, 341, 378, 458, 493, 554
Tru1I	TTAA	2 cut(s)	63, 188
Tru9I	TTAA	2 cut(s)	63, 188
TscAI	CASTG	1 cut(s)	165
TspDTI	ATGAA	2 cut(s)	354, 505
TspRI	CASTG	1 cut(s)	165
VneI	GTGCAC	1 cut(s)	56
XapI	RAATTY	3 cut(s)	176, 341, 458
XceI	RCATGY	2 cut(s)	47, 221
XmiI	GTMKAC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.