Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004807

Physical Location & Seq

Genomic Coordinates Forward (+)

30862718 .. 30865133

Gene Structure 2416 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G323100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGACTAAAGAAGAAGACTTTAAGCTCCTCAAGATCCAGACTTGTGTTCTCAAAGTGAACATACATTGTGATGGGTGTAAGCAGAAAGTGAAGAAACTCCTTCAGAGAATTGAAGGTGTTTACCAAGTAAATATCGATGCTGATCAGCAGAAAGTCACGGTTTCTGGAAATGTCGATTCTGCCACTTTGATCAAGAAACTGACCAGAGCTGGCAAACATGCTGAGCTTTGGTCCCAGAAATCCAATCAAAGCCAGAAGCAAAAGAACAACTGCATCAAAGATGACAAGAACAACAAGGGTCAAAGACAGGGCATTATCAAGAACCTTGAAGCTTTCAAAAACCAGCAAAAGTTTCCTTCCTTCAGTTCTGAAGAAGATGATGAATACTTTGATGATGACGAAGAAGACGAAGAGGACGAGTTTCGGCTAATCAGGGAGAAAGTTAATCAGTTGGGTATGCTCAGGCAACAAGCAATTGATGCAAACAATGGAAAGAAAGGTGCTGGAGTCATTAATGCTGCAGCTGCCAACAATGTTGGCAATGTAAATGCTGGAAAGCAGGGGCACGCAAATCAGAACATGGGTATGAAGCCAAGTCCAGGTGGGATTGATCCAAAAACAATGGCTGCTCTGAAGATGAGCAATGCACATTTAGGTGGTGGAAACATCAATGCAGGGGAAGGCAAAAGGGGGAACATGAATGACCTGAGTACCATGATGAATTTGGCTGGTTTCCATGGAAATGGTGCTAATGCTACTGCTGCCTTGGGGCCCAACTCCAATGGCCTGGGAGGGTTTCAAGCTCCAGCAAACAGTGGGTACAGCCATCATCAGGCATCAAATGCAGAGTTTCCAAATGGTGCTGGTTATTCTACAGGGCAATATCCGGCATCTATGCTGATGAACTCAAATGGTTTCAGCCATCCATCCCAGATGATGAACATGAACATGAACATGCAGGCGAGGCAAGCTATGCAGCAACAGCAGCCCCAGATGATGTATCACAGGTCCCCATTTGTTCCTCCTAGTACTGGCTATTACTATAATTACAGCCCTAGCCCTGCCCCATACCCTTACAGTGCTGAACCTAATTACAGTGGTAACAACACTGCAGCCCATATGTTCAATGATGAGAACACAAGCAGCTGCTCAATTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

387

Amino Acids

42.17

Weight (kDa)

8.13

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23000 AT1G23000
fragaria_vesca	FvH4_4g32260
malus_domestica	MD16G1029800.v1.1
prunus_persica	Prupe.1G323100_v2.0.a1 Prupe.3G152200_v2.0.a1
pyrus_communis	pycom05g25530 pycom13g02530 pycom16g02540
rosa_chinensis	RchiOBHm_Chr4g0441051
rosa_laevigata	RLG00000006124 RLG00000010191 RLG00000010192
rosa_multiflora	Rmu_sc0000424.1_g000043 Rmu_sc0002157.1_g000027 Rmu_sc0002157.1_g000028 Rmu_sc0007363.1_g000002 Rmu_sc0009497.1_g000005 Rmu_sc0024852.1_g000001 Rmu_sc0039859.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381970
rosa_rugosa	Rorug03G0304900 Rorug04G0330400
rosa_samantha	Rh2DG461600 Rh4AG008900 Rh4AG382100 Rh4BG395700 Rh4CG410800 Rh4DG388800
rosa_wichuraiana	Rw4G000240 Rw4G032960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	28, 605
AcsI	RAATTY	1 cut(s)	721
AcuI	CTGAAG	4 cut(s)	86, 346, 390, 653
AfaI	GTAC	3 cut(s)	712, 821, 1030
AfiI	CCNNNNNNNGG	3 cut(s)	599, 832, 1031
AgsI	TTSAA	5 cut(s)	113, 329, 337, 800, 1126
AjnI	CCWGG	2 cut(s)	598, 786
AluBI	AGCT	8 cut(s)	25, 209, 226, 332, 524, 803, 971, 1146
AluI	AGCT	8 cut(s)	25, 209, 226, 332, 524, 803, 971, 1146
AlwI	GGATC	2 cut(s)	28, 605
AoxI	GGCC	2 cut(s)	770, 784
ApaI	GGGCCC	1 cut(s)	774
ApoI	RAATTY	1 cut(s)	721
AseI	ATTAAT	1 cut(s)	513
AspS9I	GGNCC	4 cut(s)	231, 770, 771, 1008
AvaII	GGWCC	2 cut(s)	231, 1008
BaeGI	GKGCMC	2 cut(s)	567, 774
BaeI	ACNNNNGTAYC	2 cut(s)	694, 727
BanII	GRGCYC	1 cut(s)	774
BbsI	GAAGAC	2 cut(s)	21, 411
BccI	CCATC	4 cut(s)	65, 834, 930, 934
BciT130I	CCWGG	2 cut(s)	600, 788
BclI	TGATCA	2 cut(s)	142, 189
BfaI	CTAG	2 cut(s)	1026, 1056
BfmI	CTRYAG	3 cut(s)	519, 873, 1110
BlpI	GCTNAGC	1 cut(s)	222
BmcAI	AGTACT	1 cut(s)	1030
Bme1390I	CCNGG	2 cut(s)	600, 788
Bme18I	GGWCC	2 cut(s)	231, 1008
BmgT120I	GGNCC	4 cut(s)	231, 770, 771, 1008
BmiI	GGNNCC	4 cut(s)	233, 771, 772, 1010
BmrFI	CCNGG	2 cut(s)	600, 788
BmsI	GCATC	5 cut(s)	127, 282, 469, 845, 899
BpiI	GAAGAC	2 cut(s)	21, 411
BpmI	CTGGAG	2 cut(s)	525, 789
Bpu10I	CCTNAGC	1 cut(s)	461
Bpu1102I	GCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	14
Bsa29I	ATCGAT	1 cut(s)	135
BsaBI	GATNNNNATC	1 cut(s)	141
BsaJI	CCNNGG	3 cut(s)	736, 765, 787
Bsc4I	CCNNNNNNNGG	3 cut(s)	599, 832, 1031
Bse1I	ACTGG	1 cut(s)	1036
Bse3DI	GCAATG	2 cut(s)	547, 649
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	2 cut(s)	600, 788
BseCI	ATCGAT	1 cut(s)	135
BseDI	CCNNGG	3 cut(s)	736, 765, 787
BseGI	GGATG	2 cut(s)	922, 926
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	3 cut(s)	599, 832, 1031
BseMI	GCAATG	2 cut(s)	547, 649
BseMII	CTCAG	3 cut(s)	213, 475, 698
BseNI	ACTGG	1 cut(s)	1036
BseRI	GAGGAG	1 cut(s)	17
BseSI	GKGCMC	2 cut(s)	567, 774
BshFI	GGCC	2 cut(s)	772, 786
BshVI	ATCGAT	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	887
BslFI	GGGAC	2 cut(s)	217, 994
BslI	CCNNNNNNNGG	3 cut(s)	599, 832, 1031
BsmFI	GGGAC	2 cut(s)	217, 994
BsnI	GGCC	2 cut(s)	772, 786
Bsp120I	GGGCCC	1 cut(s)	770
Bsp1286I	GDGCHC	2 cut(s)	567, 774
Bsp143I	GATC	4 cut(s)	33, 142, 189, 610
Bsp1720I	GCTNAGC	1 cut(s)	222
Bsp19I	CCATGG	1 cut(s)	736
BspANI	GGCC	2 cut(s)	772, 786
BspCNI	CTCAG	3 cut(s)	214, 474, 699
BspDI	ATCGAT	1 cut(s)	135
BspLI	GGNNCC	4 cut(s)	233, 771, 772, 1010
BspMAI	CTGCAG	2 cut(s)	523, 1114
BspPI	GGATC	2 cut(s)	28, 605
BsrDI	GCAATG	2 cut(s)	547, 649
BsrI	ACTGG	1 cut(s)	1036
BssECI	CCNNGG	3 cut(s)	736, 765, 787
BssMI	GATC	4 cut(s)	33, 142, 189, 610
BssT1I	CCWWGG	2 cut(s)	736, 765
Bst2UI	CCWGG	2 cut(s)	600, 788
Bst4CI	ACNGT	4 cut(s)	160, 815, 1079, 1097
Bst6I	CTCTTC	1 cut(s)	405
BstAPI	GCANNNNNTGC	3 cut(s)	479, 842, 973
BstC8I	GCNNGC	4 cut(s)	211, 567, 960, 969
BstDEI	CTNAG	3 cut(s)	222, 461, 707
BstDSI	CCRYGG	1 cut(s)	736
BstF5I	GGATG	2 cut(s)	922, 926
BstKTI	GATC	4 cut(s)	36, 145, 192, 613
BstMBI	GATC	4 cut(s)	33, 142, 189, 610
BstMWI	GCNNNNNNNGC	9 cut(s)	479, 524, 761, 842, 964, 968, 973, 982, 985
BstNI	CCWGG	2 cut(s)	600, 788
BstNSI	RCATGY	2 cut(s)	221, 958
BstSCI	CCNGG	2 cut(s)	598, 786
BstSFI	CTRYAG	3 cut(s)	519, 873, 1110
BstSLI	GKGCMC	2 cut(s)	567, 774
BstV2I	GAAGAC	2 cut(s)	21, 411
BstX2I	RGATCY	1 cut(s)	33
BstXI	CCANNNNNNTGG	2 cut(s)	743, 787
BstYI	RGATCY	1 cut(s)	33
Bsu15I	ATCGAT	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	772, 786
BsuTUI	ATCGAT	1 cut(s)	135
BtgI	CCRYGG	1 cut(s)	736
BtsCI	GGATG	2 cut(s)	922, 926
BtsI	GCAGTG	1 cut(s)	1107
BtsIMutI	CAGTG	4 cut(s)	820, 1084, 1102, 1107
Cac8I	GCNNGC	4 cut(s)	211, 567, 960, 969
Cfr13I	GGNCC	4 cut(s)	231, 770, 771, 1008
ClaI	ATCGAT	1 cut(s)	135
Csp6I	GTAC	3 cut(s)	711, 820, 1029
CviAII	CATG	8 cut(s)	218, 580, 697, 715, 737, 943, 949, 955
CviQI	GTAC	3 cut(s)	711, 820, 1029
DdeI	CTNAG	3 cut(s)	222, 461, 707
DpnI	GATC	4 cut(s)	35, 144, 191, 612
DpnII	GATC	4 cut(s)	33, 142, 189, 610
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco130I	CCWWGG	2 cut(s)	736, 765
Eco24I	GRGCYC	1 cut(s)	774
Eco47I	GGWCC	2 cut(s)	231, 1008
Eco57I	CTGAAG	4 cut(s)	86, 346, 390, 653
EcoO109I	RGGNCCY	2 cut(s)	770, 1008
EcoRII	CCWGG	2 cut(s)	598, 786
EcoT14I	CCWWGG	2 cut(s)	736, 765
EcoT38I	GRGCYC	1 cut(s)	774
ErhI	CCWWGG	2 cut(s)	736, 765
FaeI	CATG	8 cut(s)	221, 583, 700, 718, 740, 946, 952, 958
FaqI	GGGAC	2 cut(s)	217, 994
FatI	CATG	8 cut(s)	217, 579, 696, 714, 736, 942, 948, 954
FauNDI	CATATG	1 cut(s)	1119
FbaI	TGATCA	2 cut(s)	142, 189
FokI	GGATG	2 cut(s)	909, 913
FriOI	GRGCYC	1 cut(s)	774
FspBI	CTAG	2 cut(s)	1026, 1056
GsuI	CTGGAG	2 cut(s)	525, 789
HaeIII	GGCC	2 cut(s)	772, 786
HapII	CCGG	1 cut(s)	887
Hin1II	CATG	8 cut(s)	221, 583, 700, 718, 740, 946, 952, 958
HindIII	AAGCTT	1 cut(s)	330
HinfI	GANTC	2 cut(s)	176, 507
HpaII	CCGG	1 cut(s)	887
Hpy166II	GTNNAC	2 cut(s)	58, 121
Hpy188I	TCNGA	4 cut(s)	105, 370, 576, 633
Hpy188III	TCNNGA	5 cut(s)	31, 37, 165, 193, 319
Hpy8I	GTNNAC	2 cut(s)	58, 121
HpyAV	CCTTC	5 cut(s)	107, 110, 366, 370, 674
HpyCH4III	ACNGT	4 cut(s)	160, 815, 1079, 1097
HpyCH4V	TGCA	9 cut(s)	273, 482, 521, 647, 674, 845, 958, 976, 1112
HpyF10VI	GCNNNNNNNGC	9 cut(s)	479, 524, 761, 842, 964, 968, 973, 982, 985
HpyF3I	CTNAG	3 cut(s)	222, 461, 707
Hsp92II	CATG	8 cut(s)	221, 583, 700, 718, 740, 946, 952, 958
Ksp22I	TGATCA	2 cut(s)	142, 189
Kzo9I	GATC	4 cut(s)	33, 142, 189, 610
LmnI	GCTCC	2 cut(s)	30, 808
LweI	GCATC	5 cut(s)	127, 282, 469, 845, 899
MaeI	CTAG	2 cut(s)	1026, 1056
MaeIII	GTNAC	2 cut(s)	154, 1100
MalI	GATC	4 cut(s)	35, 144, 191, 612
MboI	GATC	4 cut(s)	33, 142, 189, 610
MboII	GAAGA	9 cut(s)	23, 26, 103, 383, 386, 413, 416, 422, 646
MfeI	CAATTG	1 cut(s)	474
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	2 cut(s)	567, 774
MluCI	AATT	6 cut(s)	108, 474, 721, 1045, 1090, 1152
MlyI	GAGTC	1 cut(s)	516
MnlI	CCTC	5 cut(s)	38, 406, 785, 957, 1032
MseI	TTAA	3 cut(s)	21, 444, 513
MslI	CAYNNNNRTG	6 cut(s)	69, 584, 654, 741, 947, 953
MspA1I	CMGCKG	2 cut(s)	524, 1146
MspI	CCGG	1 cut(s)	887
MspR9I	CCNGG	2 cut(s)	600, 788
MunI	CAATTG	1 cut(s)	474
MvaI	CCWGG	2 cut(s)	600, 788
MwoI	GCNNNNNNNGC	9 cut(s)	479, 524, 761, 842, 964, 968, 973, 982, 985
NcoI	CCATGG	1 cut(s)	736
NdeI	CATATG	1 cut(s)	1119
NdeII	GATC	4 cut(s)	33, 142, 189, 610
NlaIII	CATG	8 cut(s)	221, 583, 700, 718, 740, 946, 952, 958
NlaIV	GGNNCC	4 cut(s)	233, 771, 772, 1010
NmuCI	GTSAC	1 cut(s)	154
NspI	RCATGY	2 cut(s)	221, 958
PcsI	WCGNNNNNNNCGW	2 cut(s)	405, 414
PfeI	GAWTC	1 cut(s)	176
PleI	GAGTC	1 cut(s)	515
PpsI	GAGTC	1 cut(s)	515
PpuMI	RGGWCCY	1 cut(s)	1008
PshBI	ATTAAT	1 cut(s)	513
Psp5II	RGGWCCY	1 cut(s)	1008
Psp6I	CCWGG	2 cut(s)	598, 786
PspGI	CCWGG	2 cut(s)	598, 786
PspN4I	GGNNCC	4 cut(s)	233, 771, 772, 1010
PspOMI	GGGCCC	1 cut(s)	770
PspPI	GGNCC	4 cut(s)	231, 770, 771, 1008
PspPPI	RGGWCCY	1 cut(s)	1008
PstI	CTGCAG	2 cut(s)	523, 1114
PsuI	RGATCY	1 cut(s)	33
PvuII	CAGCTG	2 cut(s)	524, 1146
RsaI	GTAC	3 cut(s)	712, 821, 1030
RsaNI	GTAC	3 cut(s)	711, 820, 1029
RseI	CAYNNNNRTG	6 cut(s)	69, 584, 654, 741, 947, 953
SaqAI	TTAA	3 cut(s)	21, 444, 513
Sau3AI	GATC	4 cut(s)	33, 142, 189, 610
Sau96I	GGNCC	4 cut(s)	231, 770, 771, 1008
ScaI	AGTACT	1 cut(s)	1030
SchI	GAGTC	1 cut(s)	516
ScrFI	CCNGG	2 cut(s)	600, 788
SduI	GDGCHC	2 cut(s)	567, 774
SfaNI	GCATC	5 cut(s)	127, 282, 469, 845, 899
SfcI	CTRYAG	3 cut(s)	519, 873, 1110
SinI	GGWCC	2 cut(s)	231, 1008
SmiMI	CAYNNNNRTG	6 cut(s)	69, 584, 654, 741, 947, 953
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	6 cut(s)	108, 474, 721, 1045, 1090, 1152
SspMI	CTAG	2 cut(s)	1026, 1056
StyD4I	CCNGG	2 cut(s)	598, 786
StyI	CCWWGG	2 cut(s)	736, 765
TaaI	ACNGT	4 cut(s)	160, 815, 1079, 1097
TaqI	TCGA	2 cut(s)	135, 174
TasI	AATT	6 cut(s)	108, 474, 721, 1045, 1090, 1152
TatI	WGTACW	1 cut(s)	1028
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	3 cut(s)	21, 444, 513
Tru9I	TTAA	3 cut(s)	21, 444, 513
TscAI	CASTG	4 cut(s)	820, 1084, 1102, 1114
TseFI	GTSAC	1 cut(s)	154
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	8 cut(s)	396, 602, 713, 734, 917, 953, 959, 965
TspRI	CASTG	4 cut(s)	820, 1084, 1102, 1114
VpaK11BI	GGWCC	2 cut(s)	231, 1008
VspI	ATTAAT	1 cut(s)	513
XapI	RAATTY	1 cut(s)	721
XceI	RCATGY	2 cut(s)	221, 958
XcmI	CCANNNNNNNNNTGG	1 cut(s)	721
XspI	CTAG	2 cut(s)	1026, 1056
ZrmI	AGTACT	1 cut(s)	1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.