Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002157.1

Orthogroup ID

OG0004807

Physical Location & Seq

Genomic Coordinates Forward (+)

120447 .. 120941

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002157.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atgactaaagatgaagactttaaactcctcgaggtccagacttgtgttctcaaagtgaacatacactttgatgggtgtaagcaggaagtaaagaaactgcttcagagaattgaaggtgtttaccaagtcagcatagatgctgatcagcagaaagtcacagtttcaggggttatagactctgccactttgatcaagaaattggttagagatgggacacatgctgagctttggtcccagcagaaggccaatcagaaccaaaaccagaagcaaaagaataccaactgcatcaaggacaacaaaggccaaaagcagcaggggtgcataataaagggccgtgaagcaatcaaaaacctgctgcagcagaagttccccaatttccttactgaagaggatattgatgacttcttggacgacgatgaggaggaggatgaagaggataagttgaggtttctggggcagaaaatgaaccagcgactgatgcaaacaacaatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

164

Amino Acids

19.02

Weight (kDa)

5.32

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23000 AT1G23000
fragaria_vesca	FvH4_4g32260
malus_domestica	MD16G1029800.v1.1
prunus_persica	Prupe.1G323100_v2.0.a1 Prupe.3G152200_v2.0.a1
pyrus_communis	pycom05g25530 pycom13g02530 pycom16g02540
rosa_chinensis	RchiOBHm_Chr4g0441051
rosa_laevigata	RLG00000006124 RLG00000010191 RLG00000010192
rosa_multiflora	Rmu_sc0000424.1_g000043 Rmu_sc0002157.1_g000027 Rmu_sc0002157.1_g000028 Rmu_sc0007363.1_g000002 Rmu_sc0009497.1_g000005 Rmu_sc0024852.1_g000001 Rmu_sc0039859.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381970
rosa_rugosa	Rorug03G0304900 Rorug04G0330400
rosa_samantha	Rh2DG461600 Rh4AG008900 Rh4AG382100 Rh4BG395700 Rh4CG410800 Rh4DG388800
rosa_wichuraiana	Rw4G000240 Rw4G032960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	29
Acc36I	ACCTGC	1 cut(s)	360
AcuI	CTGAAG	2 cut(s)	86, 405
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	1 cut(s)	113
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
AlwNI	CAGNNNCTG	1 cut(s)	475
Ama87I	CYCGRG	1 cut(s)	29
AoxI	GGCC	3 cut(s)	243, 301, 331
ApeKI	GCWGC	3 cut(s)	310, 355, 358
AspS9I	GGNCC	3 cut(s)	34, 231, 331
AvaI	CYCGRG	1 cut(s)	29
AvaII	GGWCC	2 cut(s)	34, 231
BbsI	GAAGAC	1 cut(s)	21
BbvI	GCAGC	3 cut(s)	322, 342, 370
BccI	CCATC	2 cut(s)	65, 203
BceAI	ACGGC	1 cut(s)	318
BclI	TGATCA	2 cut(s)	142, 189
BfmI	CTRYAG	1 cut(s)	356
BfuAI	ACCTGC	1 cut(s)	360
BisI	GCNGC	3 cut(s)	311, 356, 359
BlpI	GCTNAGC	1 cut(s)	222
BlsI	GCNGC	3 cut(s)	312, 357, 360
Bme18I	GGWCC	2 cut(s)	34, 231
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	3 cut(s)	34, 231, 331
BmiI	GGNNCC	1 cut(s)	233
BmsI	GCATC	3 cut(s)	127, 294, 468
BpiI	GAAGAC	1 cut(s)	21
Bpu1102I	GCTNAGC	1 cut(s)	222
BsaBI	GATNNNNATC	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse8I	GATNNNNATC	1 cut(s)	141
BseGI	GGATG	1 cut(s)	433
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMII	CTCAG	1 cut(s)	213
BseRI	GAGGAG	3 cut(s)	17, 434, 437
BseXI	GCAGC	3 cut(s)	322, 342, 370
BseYI	CCCAGC	1 cut(s)	234
BshFI	GGCC	3 cut(s)	245, 303, 333
BsiHKCI	CYCGRG	1 cut(s)	29
BslFI	GGGAC	2 cut(s)	217, 226
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmFI	GGGAC	2 cut(s)	217, 226
BsnI	GGCC	3 cut(s)	245, 303, 333
BsoBI	CYCGRG	1 cut(s)	29
Bsp143I	GATC	2 cut(s)	142, 189
Bsp1720I	GCTNAGC	1 cut(s)	222
BspANI	GGCC	3 cut(s)	245, 303, 333
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	1 cut(s)	233
BspMAI	CTGCAG	1 cut(s)	360
BspMI	ACCTGC	1 cut(s)	360
BssMI	GATC	2 cut(s)	142, 189
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	2 cut(s)	381, 426
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	433
BstKTI	GATC	2 cut(s)	145, 192
BstMBI	GATC	2 cut(s)	142, 189
BstMWI	GCNNNNNNNGC	1 cut(s)	478
BstNSI	RCATGY	1 cut(s)	221
BstSFI	CTRYAG	1 cut(s)	356
BstV1I	GCAGC	3 cut(s)	322, 342, 370
BstV2I	GAAGAC	1 cut(s)	21
BsuRI	GGCC	3 cut(s)	245, 303, 333
BtsCI	GGATG	1 cut(s)	433
BveI	ACCTGC	1 cut(s)	360
CaiI	CAGNNNCTG	1 cut(s)	475
Cfr13I	GGNCC	3 cut(s)	34, 231, 331
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	4 cut(s)	226, 245, 303, 333
CviKI_1	RGCY	4 cut(s)	226, 245, 303, 333
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	2 cut(s)	144, 191
DpnII	GATC	2 cut(s)	142, 189
DraI	TTTAAA	1 cut(s)	22
Eam1104I	CTCTTC	2 cut(s)	381, 426
EarI	CTCTTC	2 cut(s)	381, 426
Eco47I	GGWCC	2 cut(s)	34, 231
Eco57I	CTGAAG	2 cut(s)	86, 405
Eco88I	CYCGRG	1 cut(s)	29
FaeI	CATG	1 cut(s)	221
FaiI	YATR	5 cut(s)	62, 134, 173, 219, 323
FaqI	GGGAC	2 cut(s)	217, 226
FatI	CATG	1 cut(s)	217
FbaI	TGATCA	2 cut(s)	142, 189
Fnu4HI	GCNGC	3 cut(s)	311, 356, 359
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	3 cut(s)	311, 356, 359
GluI	GCNGC	3 cut(s)	311, 356, 359
GsaI	CCCAGC	1 cut(s)	238
HaeIII	GGCC	3 cut(s)	245, 303, 333
Hin1II	CATG	1 cut(s)	221
HinfI	GANTC	1 cut(s)	176
Hpy166II	GTNNAC	2 cut(s)	58, 121
Hpy188I	TCNGA	2 cut(s)	105, 252
Hpy188III	TCNNGA	2 cut(s)	37, 193
Hpy8I	GTNNAC	2 cut(s)	58, 121
Hpy99I	CGWCG	1 cut(s)	416
HpyAV	CCTTC	2 cut(s)	107, 235
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	4 cut(s)	285, 321, 358, 481
HpyF10VI	GCNNNNNNNGC	1 cut(s)	478
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	221
Ksp22I	TGATCA	2 cut(s)	142, 189
Kzo9I	GATC	2 cut(s)	142, 189
LpnPI	CCDG	9 cut(s)	50, 68, 150, 248, 275, 299, 365, 437, 482
Lsp1109I	GCAGC	3 cut(s)	322, 342, 370
LweI	GCATC	3 cut(s)	127, 294, 468
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	2 cut(s)	144, 191
MboI	GATC	2 cut(s)	142, 189
MboII	GAAGA	3 cut(s)	26, 398, 443
MluCI	AATT	3 cut(s)	108, 197, 373
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	8 cut(s)	25, 38, 382, 412, 415, 418, 427, 438
MseI	TTAA	1 cut(s)	21
MslI	CAYNNNNRTG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	478
NdeII	GATC	2 cut(s)	142, 189
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	1 cut(s)	233
NmuCI	GTSAC	1 cut(s)	154
NspI	RCATGY	1 cut(s)	221
PaeR7I	CTCGAG	1 cut(s)	29
PkrI	GCNGC	3 cut(s)	312, 357, 360
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PspFI	CCCAGC	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	233
PspPI	GGNCC	3 cut(s)	34, 231, 331
PspXI	VCTCGAGB	1 cut(s)	29
PstI	CTGCAG	1 cut(s)	360
PstNI	CAGNNNCTG	1 cut(s)	475
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	3 cut(s)	311, 356, 359
Sau3AI	GATC	2 cut(s)	142, 189
Sau96I	GGNCC	3 cut(s)	34, 231, 331
SchI	GAGTC	1 cut(s)	170
SetI	ASST	5 cut(s)	36, 118, 228, 354, 449
SfaNI	GCATC	3 cut(s)	127, 294, 468
SfcI	CTRYAG	1 cut(s)	356
Sfr274I	CTCGAG	1 cut(s)	29
SinI	GGWCC	2 cut(s)	34, 231
SlaI	CTCGAG	1 cut(s)	29
SmiMI	CAYNNNNRTG	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	3 cut(s)	108, 197, 373
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	30
TasI	AATT	3 cut(s)	108, 197, 373
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	3 cut(s)	310, 355, 358
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	3 cut(s)	27, 444, 479
VpaK11BI	GGWCC	2 cut(s)	34, 231
XceI	RCATGY	1 cut(s)	221
XhoI	CTCGAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.