Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004807

Physical Location & Seq

Genomic Coordinates Reverse (-)

16600583 .. 16603907

Gene Structure 3325 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G152200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGACAACAAATGAATTTGTGTTCGTGAATATTAAGACACATTCTCTCAAAGTACACATTAACTGTGAAGGATGCGTGCAGAAAGTTAGAAAACTCCTCAGGAAGATCGAAGGTGTCTATAGTGTACACATCGATGCAGAAGAACAGAAGATCACAGTCACAGGAAATGTAGATTTTGCTACTTTAATCAGAAAGCTGGGCAACGCTGGTAAACATGCAGAGCCTTGGTCTCCAAGCTCCAACCAAACAAAAGCTCCTATGAATGGCCTCAATTTAGACTCTGAAAATCAGCTTTTGCTCCCACCCTTCTTTGGCAGTGAAGGCCAACATGGCTGGGGATCTGGTAATTTTGTGGATGGAAATGGAAATTTGATTGGTGCTGCTCATCATGGAAAATTGCAGGGCAATGTTTTTCCCATGATGGGCCGTACGGGTTTTCATGGCAATGCAGAAGAAGGGCTTGAATTTCGTGGCCTGCAAGATTTCTCTGCAGGATTTCCAGCAGTAGGTGAATATGGTCATTCAAGACCTGTGATGTTGACCAACTCAGAAGGGTACCCTCACACTAATTTTGCACCTGCCTTCATGATCCCACCTAACACTTCCTCGTCTCAGTATAACGCTGGATCAGCAACACCCTCTGGTATCTACTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

219

Amino Acids

23.61

Weight (kDa)

6.54

Isoelectric Point (pI)

27.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23000 AT1G23000
fragaria_vesca	FvH4_4g32260
malus_domestica	MD16G1029800.v1.1
prunus_persica	Prupe.1G323100_v2.0.a1 Prupe.3G152200_v2.0.a1
pyrus_communis	pycom05g25530 pycom13g02530 pycom16g02540
rosa_chinensis	RchiOBHm_Chr4g0441051
rosa_laevigata	RLG00000006124 RLG00000010191 RLG00000010192
rosa_multiflora	Rmu_sc0000424.1_g000043 Rmu_sc0002157.1_g000027 Rmu_sc0002157.1_g000028 Rmu_sc0007363.1_g000002 Rmu_sc0009497.1_g000005 Rmu_sc0024852.1_g000001 Rmu_sc0039859.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381970
rosa_rugosa	Rorug03G0304900 Rorug04G0330400
rosa_samantha	Rh2DG461600 Rh4AG008900 Rh4AG382100 Rh4BG395700 Rh4CG410800 Rh4DG388800
rosa_wichuraiana	Rw4G000240 Rw4G032960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	586
Acc36I	ACCTGC	1 cut(s)	586
Acc65I	GGTACC	1 cut(s)	555
AccB1I	GGYRCC	1 cut(s)	555
AclWI	GGATC	3 cut(s)	346, 583, 634
AcsI	RAATTY	3 cut(s)	14, 367, 464
AfaI	GTAC	4 cut(s)	54, 126, 430, 557
AfiI	CCNNNNNNNGG	4 cut(s)	263, 311, 422, 506
AgsI	TTSAA	2 cut(s)	464, 525
AluBI	AGCT	4 cut(s)	196, 237, 254, 292
AluI	AGCT	4 cut(s)	196, 237, 254, 292
Alw26I	GTCTC	2 cut(s)	234, 615
AlwI	GGATC	3 cut(s)	346, 583, 634
AoxI	GGCC	4 cut(s)	265, 322, 424, 472
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	3 cut(s)	14, 367, 464
Asp718I	GGTACC	1 cut(s)	555
AspS9I	GGNCC	1 cut(s)	424
AsuHPI	GGTGA	1 cut(s)	521
AxyI	CCTNAGG	1 cut(s)	98
BanI	GGYRCC	1 cut(s)	555
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	2 cut(s)	350, 415
BceAI	ACGGC	1 cut(s)	411
BcoDI	GTCTC	2 cut(s)	234, 615
BfmI	CTRYAG	2 cut(s)	118, 489
BfuAI	ACCTGC	1 cut(s)	586
BglI	GCCNNNNNGGC	1 cut(s)	330
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	1 cut(s)	557
BmsI	GCATC	2 cut(s)	62, 124
Bsa29I	ATCGAT	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	234
BsaJI	CCNNGG	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	4 cut(s)	263, 311, 422, 506
Bse21I	CCTNAGG	1 cut(s)	98
Bse3DI	GCAATG	2 cut(s)	412, 451
BseCI	ATCGAT	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	224
BseGI	GGATG	2 cut(s)	77, 361
BseLI	CCNNNNNNNGG	4 cut(s)	263, 311, 422, 506
BseMI	GCAATG	2 cut(s)	412, 451
BseMII	CTCAG	3 cut(s)	112, 561, 626
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	367
BseYI	CCCAGC	2 cut(s)	196, 333
BsgI	GTGCAG	1 cut(s)	98
BshFI	GGCC	4 cut(s)	267, 324, 426, 474
BshNI	GGYRCC	1 cut(s)	555
BshVI	ATCGAT	1 cut(s)	132
BsiWI	CGTACG	1 cut(s)	428
BslI	CCNNNNNNNGG	4 cut(s)	263, 311, 422, 506
BsmAI	GTCTC	2 cut(s)	234, 615
BsmBI	CGTCTC	1 cut(s)	615
BsnI	GGCC	4 cut(s)	267, 324, 426, 474
Bso31I	GGTCTC	1 cut(s)	234
Bsp1407I	TGTACA	1 cut(s)	124
Bsp143I	GATC	5 cut(s)	105, 150, 338, 588, 626
BspANI	GGCC	4 cut(s)	267, 324, 426, 474
BspCNI	CTCAG	3 cut(s)	111, 560, 625
BspDI	ATCGAT	1 cut(s)	132
BspHI	TCATGA	1 cut(s)	585
BspLI	GGNNCC	1 cut(s)	557
BspMAI	CTGCAG	1 cut(s)	493
BspMI	ACCTGC	1 cut(s)	586
BspPI	GGATC	3 cut(s)	346, 583, 634
BspT107I	GGYRCC	1 cut(s)	555
BspTNI	GGTCTC	1 cut(s)	234
BsrDI	GCAATG	2 cut(s)	412, 451
BsrGI	TGTACA	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	224
BssMI	GATC	5 cut(s)	105, 150, 338, 588, 626
BssT1I	CCWWGG	1 cut(s)	224
Bst4CI	ACNGT	2 cut(s)	65, 157
BstAUI	TGTACA	1 cut(s)	124
BstC8I	GCNNGC	2 cut(s)	77, 476
BstDEI	CTNAG	3 cut(s)	98, 547, 612
BstF5I	GGATG	2 cut(s)	77, 361
BstKTI	GATC	5 cut(s)	108, 153, 341, 591, 629
BstMAI	GTCTC	2 cut(s)	234, 615
BstMBI	GATC	5 cut(s)	105, 150, 338, 588, 626
BstMWI	GCNNNNNNNGC	3 cut(s)	321, 330, 629
BstNSI	RCATGY	1 cut(s)	218
BstSFI	CTRYAG	2 cut(s)	118, 489
BstV1I	GCAGC	1 cut(s)	367
BstX2I	RGATCY	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	338
Bsu15I	ATCGAT	1 cut(s)	132
Bsu36I	CCTNAGG	1 cut(s)	98
BsuRI	GGCC	4 cut(s)	267, 324, 426, 474
BsuTUI	ATCGAT	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	77, 361
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	322
BveI	ACCTGC	1 cut(s)	586
Cac8I	GCNNGC	2 cut(s)	77, 476
CciI	TCATGA	1 cut(s)	585
Cfr13I	GGNCC	1 cut(s)	424
ClaI	ATCGAT	1 cut(s)	132
Csp6I	GTAC	4 cut(s)	53, 125, 429, 556
CviAII	CATG	6 cut(s)	215, 329, 389, 418, 440, 586
CviQI	GTAC	4 cut(s)	53, 125, 429, 556
DdeI	CTNAG	3 cut(s)	98, 547, 612
DpnI	GATC	5 cut(s)	107, 152, 340, 590, 628
DpnII	GATC	5 cut(s)	105, 150, 338, 588, 626
Eco130I	CCWWGG	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	234
Eco81I	CCTNAGG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	224
Esp3I	CGTCTC	1 cut(s)	615
FaeI	CATG	6 cut(s)	218, 332, 392, 421, 443, 589
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FatI	CATG	6 cut(s)	214, 328, 388, 417, 439, 585
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	2 cut(s)	84, 368
Fsp4HI	GCNGC	1 cut(s)	381
GluI	GCNGC	1 cut(s)	381
GsaI	CCCAGC	2 cut(s)	200, 337
HaeIII	GGCC	4 cut(s)	267, 324, 426, 474
Hin1II	CATG	6 cut(s)	218, 332, 392, 421, 443, 589
HincII	GTYRAC	1 cut(s)	540
HindII	GTYRAC	1 cut(s)	540
HinfI	GANTC	1 cut(s)	278
HphI	GGTGA	1 cut(s)	521
Hpy166II	GTNNAC	5 cut(s)	55, 125, 127, 212, 540
Hpy188I	TCNGA	3 cut(s)	191, 283, 550
Hpy188III	TCNNGA	4 cut(s)	25, 100, 525, 586
Hpy8I	GTNNAC	5 cut(s)	55, 125, 127, 212, 540
HpyAV	CCTTC	7 cut(s)	62, 104, 314, 316, 449, 545, 592
HpyCH4III	ACNGT	2 cut(s)	65, 157
HpyCH4V	TGCA	8 cut(s)	79, 137, 218, 400, 449, 478, 491, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	321, 330, 629
HpyF3I	CTNAG	3 cut(s)	98, 547, 612
Hsp92II	CATG	6 cut(s)	218, 332, 392, 421, 443, 589
KpnI	GGTACC	1 cut(s)	559
Kzo9I	GATC	5 cut(s)	105, 150, 338, 588, 626
LmnI	GCTCC	3 cut(s)	242, 259, 303
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	2 cut(s)	62, 124
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	5 cut(s)	107, 152, 340, 590, 628
MboI	GATC	5 cut(s)	105, 150, 338, 588, 626
MboII	GAAGA	4 cut(s)	115, 152, 160, 464
MflI	RGATCY	1 cut(s)	338
MluCI	AATT	7 cut(s)	14, 271, 346, 367, 395, 464, 568
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	5 cut(s)	107, 278, 570, 616, 649
MseI	TTAA	3 cut(s)	33, 60, 185
MslI	CAYNNNNRTG	2 cut(s)	132, 444
MwoI	GCNNNNNNNGC	3 cut(s)	321, 330, 629
NdeII	GATC	5 cut(s)	105, 150, 338, 588, 626
NlaIII	CATG	6 cut(s)	218, 332, 392, 421, 443, 589
NlaIV	GGNNCC	1 cut(s)	557
NmuCI	GTSAC	1 cut(s)	157
NspI	RCATGY	1 cut(s)	218
PagI	TCATGA	1 cut(s)	585
PaqCI	CACCTGC	1 cut(s)	586
Pfl23II	CGTACG	1 cut(s)	428
PkrI	GCNGC	1 cut(s)	382
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
PspFI	CCCAGC	2 cut(s)	196, 333
PspLI	CGTACG	1 cut(s)	428
PspN4I	GGNNCC	1 cut(s)	557
PspPI	GGNCC	1 cut(s)	424
PstI	CTGCAG	1 cut(s)	493
PsuI	RGATCY	1 cut(s)	338
RsaI	GTAC	4 cut(s)	54, 126, 430, 557
RsaNI	GTAC	4 cut(s)	53, 125, 429, 556
RseI	CAYNNNNRTG	2 cut(s)	132, 444
SaqAI	TTAA	3 cut(s)	33, 60, 185
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	5 cut(s)	105, 150, 338, 588, 626
Sau96I	GGNCC	1 cut(s)	424
SchI	GAGTC	1 cut(s)	272
SetI	ASST	9 cut(s)	115, 198, 239, 256, 294, 511, 532, 580, 598
SfaNI	GCATC	2 cut(s)	62, 124
SfcI	CTRYAG	2 cut(s)	118, 489
SmiMI	CAYNNNNRTG	2 cut(s)	132, 444
Sse9I	AATT	7 cut(s)	14, 271, 346, 367, 395, 464, 568
SspI	AATATT	1 cut(s)	31
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	2 cut(s)	65, 157
TaqI	TCGA	2 cut(s)	108, 132
TasI	AATT	7 cut(s)	14, 271, 346, 367, 395, 464, 568
TatI	WGTACW	2 cut(s)	52, 124
Tru1I	TTAA	3 cut(s)	33, 60, 185
Tru9I	TTAA	3 cut(s)	33, 60, 185
TscAI	CASTG	1 cut(s)	322
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	4 cut(s)	27, 275, 428, 574
TspRI	CASTG	1 cut(s)	322
XapI	RAATTY	3 cut(s)	14, 367, 464
XceI	RCATGY	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.