Rorug03G0304900
ERF Family

heavy metal transport detoxification superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000112
Physical Location & Seq
Forward (+)
32357887 .. 32359511
1625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0304900.1

Sequence Viewer

Length: 480 bp
ATGCAGAAAATGAAGAGTCTTGGGGGAAATGGCAGCAGTGGGAGGCTATCAATGGAGGAGAATGAGGATGAAGAGACTTCGAGACTGGCCATATTAACCTTCCAAGCTAGAGAAGAGGAGATTGAGAGGAAGAAGATGGAAGTGAAGGAGAGGGTTGAACTTCAATTAGGTCGTGCGGAGGAAGAAACTAGGCGCTTGGCACAAATTTGGGAAGAGCTTGAAGCAATGGCAGATCCGATGAGGAAGGAACTTGCAAATGTAAGGAAGAAAATCGACATGGTTAATCGAGAGCTGAAGCCCTTGGGACTCAGCTGCCAGAAGAAGGAAAAAGAATACAAGGAAGTCCTGGAGAGCTTCAATGAAAAGAACAAAGAAAAGGCTCAACTTGTAACCACAATGATGGAGCTTCTGACTGAGAGTGAGAGGTTGAGGATGCAAAAGCTAGAGGAGCTGAGCAAGAACATAGAACTATCACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

159

Amino Acids

18.73

Weight (kDa)

5.42

Isoelectric Point (pI)

55.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 7 - 156 4.6e-73 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 176
AclWI GGATC 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 1 cut(s) 204
AcuI CTGAAG 1 cut(s) 314
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 4 cut(s) 158, 164, 221, 358
AjnI CCWGG 1 cut(s) 345
AluBI AGCT 8 cut(s) 107, 217, 292, 312, 354, 406, 442, 451
AluI AGCT 8 cut(s) 107, 217, 292, 312, 354, 406, 442, 451
Alw26I GTCTC 2 cut(s) 68, 76
AlwI GGATC 1 cut(s) 227
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 2 cut(s) 33, 312
ApoI RAATTY 1 cut(s) 204
AspLEI GCGC 1 cut(s) 195
BalI TGGCCA 1 cut(s) 89
BbvI GCAGC 2 cut(s) 45, 299
BccI CCATC 2 cut(s) 130, 394
BciT130I CCWGG 1 cut(s) 347
BcoDI GTCTC 2 cut(s) 68, 76
BfaI CTAG 3 cut(s) 108, 189, 443
BfoI RGCGCY 1 cut(s) 196
BisI GCNGC 2 cut(s) 34, 313
BlpI GCTNAGC 1 cut(s) 452
BlsI GCNGC 2 cut(s) 35, 314
Bme1390I CCNGG 1 cut(s) 347
BmrFI CCNGG 1 cut(s) 347
BmsI GCATC 1 cut(s) 423
BpmI CTGGAG 1 cut(s) 368
Bpu1102I GCTNAGC 1 cut(s) 452
BsaJI CCNNGG 1 cut(s) 300
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 231
BseBI CCWGG 1 cut(s) 347
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 2 cut(s) 73, 438
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 3 cut(s) 322, 405, 443
BseNI ACTGG 1 cut(s) 90
BseRI GAGGAG 3 cut(s) 71, 131, 461
BseXI GCAGC 2 cut(s) 45, 299
BshFI GGCC 1 cut(s) 89
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 2 cut(s) 68, 76
BsmFI GGGAC 1 cut(s) 318
BsnI GGCC 1 cut(s) 89
Bsp143I GATC 1 cut(s) 232
Bsp1720I GCTNAGC 1 cut(s) 452
BspACI CCGC 1 cut(s) 176
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 3 cut(s) 321, 406, 444
BspPI GGATC 1 cut(s) 227
BspQI GCTCTTC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 1 cut(s) 232
BssT1I CCWWGG 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 347
Bst6I CTCTTC 4 cut(s) 8, 66, 108, 207
BstDEI CTNAG 3 cut(s) 308, 414, 452
BstF5I GGATG 2 cut(s) 73, 438
BstH2I RGCGCY 1 cut(s) 196
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 1 cut(s) 235
BstMAI GTCTC 2 cut(s) 68, 76
BstMBI GATC 1 cut(s) 232
BstMWI GCNNNNNNNGC 1 cut(s) 448
BstNI CCWGG 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 345
BstV1I GCAGC 2 cut(s) 45, 299
BstX2I RGATCY 1 cut(s) 232
BstXI CCANNNNNNTGG 1 cut(s) 400
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 1 cut(s) 89
BtsCI GGATG 2 cut(s) 73, 438
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 43
CfoI GCGC 1 cut(s) 195
CviAII CATG 1 cut(s) 277
DdeI CTNAG 3 cut(s) 308, 414, 452
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 4 cut(s) 8, 66, 108, 207
EarI CTCTTC 4 cut(s) 8, 66, 108, 207
Eco130I CCWWGG 1 cut(s) 300
Eco57I CTGAAG 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 345
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 1 cut(s) 280
FaiI YATR 3 cut(s) 92, 278, 464
FaqI GGGAC 1 cut(s) 318
FatI CATG 1 cut(s) 276
Fnu4HI GCNGC 2 cut(s) 34, 313
FokI GGATG 2 cut(s) 80, 445
Fsp4HI GCNGC 2 cut(s) 34, 313
FspBI CTAG 3 cut(s) 108, 189, 443
GlaI GCGC 1 cut(s) 194
GluI GCNGC 2 cut(s) 34, 313
GsuI CTGGAG 1 cut(s) 368
HaeII RGCGCY 1 cut(s) 196
HaeIII GGCC 1 cut(s) 89
HhaI GCGC 1 cut(s) 195
Hin1II CATG 1 cut(s) 280
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HinfI GANTC 2 cut(s) 16, 306
Hpy188I TCNGA 2 cut(s) 237, 411
Hpy188III TCNNGA 2 cut(s) 81, 287
HpyAV CCTTC 4 cut(s) 109, 139, 238, 316
HpyCH4V TGCA 3 cut(s) 4, 254, 436
HpyF10VI GCNNNNNNNGC 1 cut(s) 448
HpyF3I CTNAG 3 cut(s) 308, 414, 452
Hsp92II CATG 1 cut(s) 280
HspAI GCGC 1 cut(s) 193
Kzo9I GATC 1 cut(s) 232
LguI GCTCTTC 1 cut(s) 207
LmnI GCTCC 2 cut(s) 403, 448
LpnPI CCDG 4 cut(s) 71, 329, 332, 359
Lsp1109I GCAGC 2 cut(s) 45, 299
LweI GCATC 1 cut(s) 423
MaeI CTAG 3 cut(s) 108, 189, 443
MaeIII GTNAC 1 cut(s) 388
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 9 cut(s) 25, 83, 125, 142, 145, 194, 224, 277, 331
MflI RGATCY 1 cut(s) 232
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 2 cut(s) 164, 204
MluNI TGGCCA 1 cut(s) 89
MlyI GAGTC 2 cut(s) 25, 300
Mox20I TGGCCA 1 cut(s) 89
MscI TGGCCA 1 cut(s) 89
MseI TTAA 3 cut(s) 95, 282, 478
MslI CAYNNNNRTG 1 cut(s) 398
Msp20I TGGCCA 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 347
MvaI CCWGG 1 cut(s) 347
MwoI GCNNNNNNNGC 1 cut(s) 448
NdeII GATC 1 cut(s) 232
NlaIII CATG 1 cut(s) 280
PciSI GCTCTTC 1 cut(s) 207
PfoI TCCNGGA 1 cut(s) 345
PkrI GCNGC 2 cut(s) 35, 314
PleI GAGTC 2 cut(s) 24, 300
PpsI GAGTC 2 cut(s) 24, 300
Psp6I CCWGG 1 cut(s) 345
PspGI CCWGG 1 cut(s) 345
PsuI RGATCY 1 cut(s) 232
PvuII CAGCTG 1 cut(s) 312
RseI CAYNNNNRTG 1 cut(s) 398
SapI GCTCTTC 1 cut(s) 207
SaqAI TTAA 3 cut(s) 95, 282, 478
SatI GCNGC 2 cut(s) 34, 313
Sau3AI GATC 1 cut(s) 232
SchI GAGTC 2 cut(s) 25, 300
ScrFI CCNGG 1 cut(s) 347
SfaNI GCATC 1 cut(s) 423
SmiMI CAYNNNNRTG 1 cut(s) 398
Sse9I AATT 2 cut(s) 164, 204
SsiI CCGC 1 cut(s) 176
SspMI CTAG 3 cut(s) 108, 189, 443
StyD4I CCNGG 1 cut(s) 345
StyI CCWWGG 1 cut(s) 300
TaqI TCGA 3 cut(s) 80, 273, 286
TasI AATT 2 cut(s) 164, 204
Tru1I TTAA 3 cut(s) 95, 282, 478
Tru9I TTAA 3 cut(s) 95, 282, 478
TscAI CASTG 1 cut(s) 43
TseI GCWGC 2 cut(s) 33, 312
TspDTI ATGAA 3 cut(s) 26, 84, 375
TspRI CASTG 1 cut(s) 43
XapI RAATTY 1 cut(s) 204
XspI CTAG 3 cut(s) 108, 189, 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.