RchiOBHm_Chr5g0005101

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000112
Physical Location & Seq
Forward (+)
3319621 .. 3322825
3205 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28633

Sequence Viewer

Length: 2553 bp
ATGCCATTGGTTCATTCCTACAGAATTGAAAATGCAGAGAAAATGGTTTTGAAAGCTCTGCTTCTCTTCCTCCTCTTTCAGTTCTGCACTTGCAGGGACACCATGAGAGGGAACGGAGAACAATTGAAGGATGTTGATGGTGACTATTTAGTGTCCAAAGAAAGCAAGTTTGAATTGGGTTTCTTCAGCCCTGGAAATTCTAGCTACCGGTATGTTGGAATTTGGTATTCTCAGACTAGAGTATCTGAAAAAACAGTGGTGTGGGTTGCAAACAGAAACAATCCCATCAATGATACCTCTGGTGTGCTCACATTTAACAGGTATGGAGAACTAGTCCTTTATGCTCACAACATGGAGAGTATTCCTATATGGTCTACACATGTGTCGCAGTCGGTCCAAAATGTTAACACAAGCACTTTATCTGCACAGCTTTTGGATACAGGAAATTTAGTTGTGTTCCAGGATGATAATAATGATATCTTTATATGGCAAAGTTTTGATTATCCTACAGATACTCTGCTTCCAGGAATGAGACTTGGATTGAATCGGAAAACTGGGCTAGAATGGGCTTTAACATCCTGGAAGTCACAAGATGACCCTGGAACTGGGGACTATACACATAGGCTTTATTTGAATCAGACTGCAACCCCCCAATTTTTTACATATAAAGGTTCAAGTAAGTATTGGCGAAGTGATCCAGGGCCATATGCTACGTTGGTCACTAATCAAGACGAAACGTATTATTTCCTGAATAACACCAATGGAATTGCAAGAATAATTTTGAATGGTTCAGAGTTACAGCGCCTTACATGGAGTGATGGAGACCATCAATGGAAGGAAACCTATGCTGTACCGACATTCCGGTGTGACTGGTATGGACATTGTGGTGCCAACAGCAAATGTAGCCCTGACAATATTAGTCTGTTTGAGTGTGACTGTCTACCCGGTTTTGAACCAAAATCTGTCAATGAGTGGAATCAGAATAATGGGTCAGATGGATGTGTGAGTAAGCGAAATGAAGTTTCTAAGTGTGAGAATGAAGAAGGGTTTGTGAAGGTCACAAGAGTTAAAATTCCAGACATATCAATAGCAGCTCGATTGGAAGCACGTATGAGTAACAAAGTGTGTAGGCAGAAGTGCTTGGCAAATTGTTCTTGCACAGCATATATGAGCATTGAAAATGAAAAAGGGGTTGCTGATTGTTTGACATGGTATGATGATTTGATGGATATTTTAGTGTACACAGAGGTTGGACGAGATCTATATGTTCGTGTGGATCGAATCGAATTAGCTGAGAATTCTAGAAAATCAAAAGGTTTCTTGGAAAGAAGGGGTATGCTGGCTATTCCAATACTCTTTTCTCTGCTAGCACTGGTACTAATCATTATGTTCGCTTGCTGGTGGCGTAAGAAAAAAAGGAATACAACAGAAATTGTGGAGGCGGATGAACTTGAGGAAACTAAGAGACACCCCGAATTGCAATTTTTTGATCTGAACACACTAATGGCAGCCACAGATAACTTCTCTCATGTCAATGAACTCGGCCAAGGTGGTTTTGGCGCTGTTTATAAGGGTCAGTTACCAAATGAGCAGAAGGTAGCTGTAAAAAGGTTGTCTAAAACATCAGGACAAGGGACTGAAGAATTCAAAAATGAAGTTGCACTTATAGCAAGACTTCAACACCGCAATCTCGTAAAACTCTTAGGCTGTTGTATAAAGGGGAAAGAACGAATGTTAGTCCTGGAATACATGCCGAACAAAAGCTTGGACTCATTTCTCTTTGATCACACAAGACGGTCCTTCTTGGATTGGGAAAAGCGCTTTGAAATTATCAACGGGATTGCTCGTGGGATTCTGTATCTTCACCAAGACTCAAGATTGAGGATTATCCATAGAGATCTAAAAACCAGTAATGTTCTTCTAGATGCTGAAATGAACCCAAAAATTTCTGATTTTGGCATGGCAAGAATATTTGACGGGGACCAAATTCAGGATAAAACAAACCGAGTTGTTGGAACATATGGCTATATGTCACCAGAGTATGCAGTATTTGGCAGATTTTCTACTAAATCTGATGTCTTTAGTTTTGGGATCATTTTGTTAGAGGTTGTAACTGGCAAAAGAAACAATGGTTTTTCTCAAGAGGATCCTTCCATGAACTTGATAAGACACGTAAGTTGCACATATTTTTCTATGAATTTACCCATAGTACTTGTTCATCCATTTCTCAAATCATACATCCAACTACAGGTTTGGGAACTCTGGAGAGAAGACAGAGCCTTAGAACTTGTGGATTCGAATCTGGAGTCATATAATTCTGATGAGGTCATGAGATGCATTCAAGTTGCGCTCTTGTGCGTGCAAGAAGAATCAAAGGACAGGCCAGCCATGTCTGCCATTGTTTTCATGTTGAGTGGTGAAACATCTCCTCCATCGCCTAACCAACCTGCATATGTTTTCAGAAGAACCTCCAGCATTGATGCTGATCCATCAGTACCAATACGATTATATTCTATAAACGACTTGACAATAACTGCAGAGGAAGGTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

850

Amino Acids

97.22

Weight (kDa)

5.84

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 85 - 195 1.1e-36 D-mannose binding lectin
S_locus_glycop PF00954 242 - 321 1.6e-13 S-locus glycoprotein domain
PAN_2 PF08276 344 - 411 1.1e-15 PAN-like domain
Pkinase PF00069 509 - 723 6.6e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 511 - 801 2.4e-49 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1569
Acc36I ACCTGC 1 cut(s) 2455
AccB1I GGYRCC 1 cut(s) 887
AccI GTMKAC 2 cut(s) 374, 940
AciI CCGC 2 cut(s) 1442, 1684
AclWI GGATC 6 cut(s) 689, 1284, 2099, 2141, 2154, 2480
AcoI YGGCCR 1 cut(s) 1543
AcsI RAATTY 9 cut(s) 196, 219, 445, 1071, 1297, 1643, 1944, 1986, 2197
AcuI CTGAAG 2 cut(s) 169, 1659
AfaI GTAC 5 cut(s) 852, 1241, 1377, 2211, 2496
AfeI AGCGCT 1 cut(s) 1820
AfiI CCNNNNNNNGG 4 cut(s) 108, 605, 1990, 2248
AflIII ACRYGT 2 cut(s) 379, 2170
AgeI ACCGGT 1 cut(s) 207
AhlI ACTAGT 1 cut(s) 331
AjnI CCWGG 7 cut(s) 190, 459, 523, 578, 598, 697, 1740
AjuI GAANNNNNNNTTGG 4 cut(s) 1342, 1374, 1748, 1780
AluBI AGCT 7 cut(s) 56, 204, 430, 1094, 1292, 1601, 1764
AluI AGCT 7 cut(s) 56, 204, 430, 1094, 1292, 1601, 1764
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 3 cut(s) 526, 816, 1459
AlwI GGATC 6 cut(s) 689, 1284, 2099, 2141, 2154, 2480
Aor51HI AGCGCT 1 cut(s) 1820
AoxI GGCC 3 cut(s) 701, 1543, 2381
ApeKI GCWGC 2 cut(s) 1091, 1508
ApoI RAATTY 9 cut(s) 196, 219, 445, 1071, 1297, 1643, 1944, 1986, 2197
ArsI GACNNNNNNTTYG 2 cut(s) 2291, 2323
AsiGI ACCGGT 1 cut(s) 207
AspLEI GCGC 4 cut(s) 804, 1562, 1821, 2350
AspS9I GGNCC 4 cut(s) 394, 701, 1797, 1981
AsuC2I CCSGG 1 cut(s) 945
AsuHPI GGTGA 4 cut(s) 152, 1856, 2025, 2429
AsuII TTCGAA 1 cut(s) 2297
AsuNHI GCTAGC 1 cut(s) 1366
AvaII GGWCC 3 cut(s) 394, 1797, 1981
BaeI ACNNNNGTAYC 2 cut(s) 225, 258
BamHI GGATCC 1 cut(s) 2146
BanI GGYRCC 1 cut(s) 887
BauI CACGAG 1 cut(s) 1845
BbsI GAAGAC 1 cut(s) 2277
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 2 cut(s) 1103, 1520
BccI CCATC 8 cut(s) 131, 293, 812, 834, 989, 1219, 2440, 2497
BciT130I CCWGG 7 cut(s) 192, 461, 525, 580, 600, 699, 1742
BciVI GTATCC 1 cut(s) 430
BclI TGATCA 1 cut(s) 1783
BcnI CCSGG 1 cut(s) 945
BcoDI GTCTC 3 cut(s) 526, 816, 1459
BcuI ACTAGT 1 cut(s) 331
BfaI CTAG 7 cut(s) 201, 237, 332, 560, 1302, 1367, 1922
BfmI CTRYAG 4 cut(s) 19, 507, 2246, 2535
BfoI RGCGCY 3 cut(s) 805, 1563, 1822
BfuAI ACCTGC 1 cut(s) 2455
BfuI GTATCC 1 cut(s) 430
BglII AGATCT 2 cut(s) 1258, 1897
BisI GCNGC 2 cut(s) 1092, 1509
BlsI GCNGC 2 cut(s) 1093, 1510
BmcAI AGTACT 1 cut(s) 2211
Bme1390I CCNGG 8 cut(s) 192, 461, 525, 580, 600, 699, 945, 1742
Bme18I GGWCC 3 cut(s) 394, 1797, 1981
BmgT120I GGNCC 4 cut(s) 394, 701, 1797, 1981
BmiI GGNNCC 3 cut(s) 889, 1982, 2148
BmrFI CCNGG 8 cut(s) 192, 461, 525, 580, 600, 699, 945, 1742
BmrI ACTGGG 2 cut(s) 564, 615
BmsI GCATC 3 cut(s) 1915, 2324, 2470
BmtI GCTAGC 1 cut(s) 1370
BmuI ACTGGG 2 cut(s) 564, 615
BpiI GAAGAC 1 cut(s) 2277
BpmI CTGGAG 3 cut(s) 2284, 2324, 2455
Bpu14I TTCGAA 1 cut(s) 2297
BpuEI CTTGAG 3 cut(s) 1472, 1858, 2124
BpuMI CCSGG 1 cut(s) 945
BsaAI YACGTR 2 cut(s) 1109, 2173
BsaBI GATNNNNATC 2 cut(s) 2298, 2484
BsaI GGTCTC 1 cut(s) 816
BsaJI CCNNGG 4 cut(s) 190, 598, 698, 1546
BsaWI WCCGGW 2 cut(s) 207, 861
BsaXI ACNNNNNCTCC 4 cut(s) 318, 348, 2413, 2443
Bsc4I CCNNNNNNNGG 4 cut(s) 108, 605, 1990, 2248
Bse118I RCCGGY 1 cut(s) 207
Bse1I ACTGG 6 cut(s) 559, 610, 875, 1377, 1908, 2119
Bse8I GATNNNNATC 2 cut(s) 2298, 2484
BseBI CCWGG 7 cut(s) 192, 461, 525, 580, 600, 699, 1742
BseDI CCNNGG 4 cut(s) 190, 598, 698, 1546
BseGI GGATG 7 cut(s) 136, 469, 575, 1004, 1450, 2218, 2238
BseJI GATNNNNATC 2 cut(s) 2298, 2484
BseLI CCNNNNNNNGG 4 cut(s) 108, 605, 1990, 2248
BseMII CTCAG 2 cut(s) 245, 1284
BseNI ACTGG 6 cut(s) 559, 610, 875, 1377, 1908, 2119
BseRI GAGGAG 2 cut(s) 62, 2418
BseXI GCAGC 2 cut(s) 1103, 1520
BsgI GTGCAG 2 cut(s) 70, 408
BshFI GGCC 3 cut(s) 703, 1545, 2383
BshNI GGYRCC 1 cut(s) 887
BshTI ACCGGT 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 309
BsiSI CCGG 3 cut(s) 208, 862, 945
BslFI GGGAC 4 cut(s) 110, 623, 1648, 1994
BslI CCNNNNNNNGG 4 cut(s) 108, 605, 1990, 2248
BsmAI GTCTC 3 cut(s) 526, 816, 1459
BsmFI GGGAC 4 cut(s) 110, 623, 1648, 1994
BsmI GAATGC 1 cut(s) 2337
BsnI GGCC 3 cut(s) 703, 1545, 2383
Bso31I GGTCTC 1 cut(s) 816
Bsp119I TTCGAA 1 cut(s) 2297
Bsp1286I GDGCHC 1 cut(s) 309
Bsp1407I TGTACA 1 cut(s) 1239
Bsp143I GATC 9 cut(s) 694, 1258, 1276, 1489, 1783, 1897, 2091, 2146, 2485
BspACI CCGC 2 cut(s) 1442, 1684
BspANI GGCC 3 cut(s) 703, 1545, 2383
BspCNI CTCAG 2 cut(s) 244, 1285
BspHI TCATGA 1 cut(s) 2328
BspLI GGNNCC 3 cut(s) 889, 1982, 2148
BspMAI CTGCAG 1 cut(s) 2539
BspMI ACCTGC 1 cut(s) 2455
BspOI GCTAGC 1 cut(s) 1370
BspPI GGATC 6 cut(s) 689, 1284, 2099, 2141, 2154, 2480
BspT104I TTCGAA 1 cut(s) 2297
BspT107I GGYRCC 1 cut(s) 887
BspTNI GGTCTC 1 cut(s) 816
BsrFI RCCGGY 1 cut(s) 207
BsrGI TGTACA 1 cut(s) 1239
BsrI ACTGG 6 cut(s) 559, 610, 875, 1377, 1908, 2119
BssAI RCCGGY 1 cut(s) 207
BssECI CCNNGG 4 cut(s) 190, 598, 698, 1546
BssMI GATC 9 cut(s) 694, 1258, 1276, 1489, 1783, 1897, 2091, 2146, 2485
BssSI CACGAG 1 cut(s) 1845
BssT1I CCWWGG 1 cut(s) 1546
Bst2BI CACGAG 1 cut(s) 1845
Bst2UI CCWGG 7 cut(s) 192, 461, 525, 580, 600, 699, 1742
Bst4CI ACNGT 3 cut(s) 256, 938, 1797
Bst6I CTCTTC 1 cut(s) 71
BstAUI TGTACA 1 cut(s) 1239
BstBAI YACGTR 2 cut(s) 1109, 2173
BstBI TTCGAA 1 cut(s) 2297
BstC8I GCNNGC 5 cut(s) 1341, 1368, 1396, 2360, 2385
BstDEI CTNAG 6 cut(s) 231, 1026, 1293, 1461, 1702, 2281
BstF5I GGATG 7 cut(s) 136, 469, 575, 1004, 1450, 2218, 2238
BstH2I RGCGCY 3 cut(s) 805, 1563, 1822
BstHHI GCGC 4 cut(s) 804, 1562, 1821, 2350
BstKTI GATC 9 cut(s) 697, 1261, 1279, 1492, 1786, 1900, 2094, 2149, 2488
BstMAI GTCTC 3 cut(s) 526, 816, 1459
BstMBI GATC 9 cut(s) 694, 1258, 1276, 1489, 1783, 1897, 2091, 2146, 2485
BstMWI GCNNNNNNNGC 3 cut(s) 903, 1667, 2393
BstNI CCWGG 7 cut(s) 192, 461, 525, 580, 600, 699, 1742
BstNSI RCATGY 2 cut(s) 383, 1753
BstSCI CCNGG 8 cut(s) 190, 459, 523, 578, 598, 697, 943, 1740
BstSFI CTRYAG 4 cut(s) 19, 507, 2246, 2535
BstV1I GCAGC 2 cut(s) 1103, 1520
BstV2I GAAGAC 1 cut(s) 2277
BstX2I RGATCY 3 cut(s) 1258, 1897, 2146
BstYI RGATCY 3 cut(s) 1258, 1897, 2146
BsuI GTATCC 1 cut(s) 430
BsuRI GGCC 3 cut(s) 703, 1545, 2383
BtgZI GCGATG 1 cut(s) 2418
BtsCI GGATG 7 cut(s) 136, 469, 575, 1004, 1450, 2218, 2238
BtsIMutI CAGTG 2 cut(s) 261, 1370
BveI ACCTGC 1 cut(s) 2455
Cac8I GCNNGC 5 cut(s) 1341, 1368, 1396, 2360, 2385
CciI TCATGA 1 cut(s) 2328
CfoI GCGC 4 cut(s) 804, 1562, 1821, 2350
Cfr10I RCCGGY 1 cut(s) 207
Cfr13I GGNCC 4 cut(s) 394, 701, 1797, 1981
Csp6I GTAC 5 cut(s) 851, 1240, 1376, 2210, 2495
CspAI ACCGGT 1 cut(s) 207
CviQI GTAC 5 cut(s) 851, 1240, 1376, 2210, 2495
DdeI CTNAG 6 cut(s) 231, 1026, 1293, 1461, 1702, 2281
DpnI GATC 9 cut(s) 696, 1260, 1278, 1491, 1785, 1899, 2093, 2148, 2487
DpnII GATC 9 cut(s) 694, 1258, 1276, 1489, 1783, 1897, 2091, 2146, 2485
EaeI YGGCCR 1 cut(s) 1543
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
EciI GGCGGA 1 cut(s) 1457
Eco130I CCWWGG 1 cut(s) 1546
Eco31I GGTCTC 1 cut(s) 816
Eco32I GATATC 1 cut(s) 478
Eco47I GGWCC 3 cut(s) 394, 1797, 1981
Eco47III AGCGCT 1 cut(s) 1820
Eco57I CTGAAG 2 cut(s) 169, 1659
EcoRI GAATTC 2 cut(s) 1297, 1643
EcoRII CCWGG 7 cut(s) 190, 459, 523, 578, 598, 697, 1740
EcoRV GATATC 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 1546
EcoT22I ATGCAT 1 cut(s) 2339
ErhI CCWWGG 1 cut(s) 1546
FalI AAGNNNNNCTT 4 cut(s) 45, 77, 1647, 1679
FaqI GGGAC 4 cut(s) 110, 623, 1648, 1994
FauNDI CATATG 3 cut(s) 706, 2020, 2452
FbaI TGATCA 1 cut(s) 1783
FblI GTMKAC 2 cut(s) 374, 940
Fnu4HI GCNGC 2 cut(s) 1092, 1509
FokI GGATG 7 cut(s) 143, 476, 562, 1011, 1457, 2205, 2225
Fsp4HI GCNGC 2 cut(s) 1092, 1509
FspBI CTAG 7 cut(s) 201, 237, 332, 560, 1302, 1367, 1922
GlaI GCGC 4 cut(s) 803, 1561, 1820, 2349
GluI GCNGC 2 cut(s) 1092, 1509
GsuI CTGGAG 3 cut(s) 2284, 2324, 2455
HaeII RGCGCY 3 cut(s) 805, 1563, 1822
HaeIII GGCC 3 cut(s) 703, 1545, 2383
HapII CCGG 3 cut(s) 208, 862, 945
HhaI GCGC 4 cut(s) 804, 1562, 1821, 2350
Hin6I GCGC 4 cut(s) 802, 1560, 1819, 2348
HinP1I GCGC 4 cut(s) 802, 1560, 1819, 2348
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HindIII AAGCTT 1 cut(s) 1762
HpaI GTTAAC 1 cut(s) 406
HpaII CCGG 3 cut(s) 208, 862, 945
HphI GGTGA 4 cut(s) 152, 1856, 2025, 2429
Hpy166II GTNNAC 5 cut(s) 375, 406, 941, 1240, 1242
Hpy8I GTNNAC 5 cut(s) 375, 406, 941, 1240, 1242
HpyAV CCTTC 9 cut(s) 121, 829, 1037, 1048, 1323, 1588, 1810, 2160, 2537
HpyCH4III ACNGT 3 cut(s) 256, 938, 1797
HpyCH4IV ACGT 4 cut(s) 713, 737, 1108, 2172
HpyF10VI GCNNNNNNNGC 3 cut(s) 903, 1667, 2393
HpyF3I CTNAG 6 cut(s) 231, 1026, 1293, 1461, 1702, 2281
HpySE526I ACGT 4 cut(s) 713, 737, 1108, 2172
HspAI GCGC 4 cut(s) 802, 1560, 1819, 2348
Ksp22I TGATCA 1 cut(s) 1783
KspAI GTTAAC 1 cut(s) 406
Kzo9I GATC 9 cut(s) 694, 1258, 1276, 1489, 1783, 1897, 2091, 2146, 2485
Lsp1109I GCAGC 2 cut(s) 1103, 1520
LweI GCATC 3 cut(s) 1915, 2324, 2470
MaeI CTAG 7 cut(s) 201, 237, 332, 560, 1302, 1367, 1922
MaeII ACGT 4 cut(s) 713, 737, 1108, 2172
MalI GATC 9 cut(s) 696, 1260, 1278, 1491, 1785, 1899, 2093, 2148, 2487
MboI GATC 9 cut(s) 694, 1258, 1276, 1489, 1783, 1897, 2091, 2146, 2485
MboII GAAGA 9 cut(s) 58, 175, 1052, 1652, 1853, 1910, 2282, 2378, 2475
MfeI CAATTG 1 cut(s) 122
MflI RGATCY 3 cut(s) 1258, 1897, 2146
MhlI GDGCHC 1 cut(s) 309
MlyI GAGTC 3 cut(s) 1763, 1865, 2315
MmeI TCCRAC 4 cut(s) 196, 1231, 1993, 2266
Mph1103I ATGCAT 1 cut(s) 2339
MseI TTAA 4 cut(s) 315, 405, 572, 1068
MslI CAYNNNNRTG 4 cut(s) 862, 885, 1502, 1533
MspI CCGG 3 cut(s) 208, 862, 945
MspR9I CCNGG 8 cut(s) 192, 461, 525, 580, 600, 699, 945, 1742
MunI CAATTG 1 cut(s) 122
Mva1269I GAATGC 1 cut(s) 2337
MvaI CCWGG 7 cut(s) 192, 461, 525, 580, 600, 699, 1742
MwoI GCNNNNNNNGC 3 cut(s) 903, 1667, 2393
NciI CCSGG 1 cut(s) 945
NdeI CATATG 3 cut(s) 706, 2020, 2452
NdeII GATC 9 cut(s) 694, 1258, 1276, 1489, 1783, 1897, 2091, 2146, 2485
NheI GCTAGC 1 cut(s) 1366
NlaIV GGNNCC 3 cut(s) 889, 1982, 2148
NmeAIII GCCGAG 1 cut(s) 1521
NmuCI GTSAC 7 cut(s) 140, 585, 718, 866, 932, 1057, 2031
NsiI ATGCAT 1 cut(s) 2339
NspI RCATGY 2 cut(s) 383, 1753
NspV TTCGAA 1 cut(s) 2297
PagI TCATGA 1 cut(s) 2328
PciI ACATGT 1 cut(s) 379
PcsI WCGNNNNNNNCGW 1 cut(s) 1276
PctI GAATGC 1 cut(s) 2337
PfeI GAWTC 8 cut(s) 544, 634, 976, 1281, 1852, 2294, 2299, 2369
PfoI TCCNGGA 4 cut(s) 459, 523, 578, 1740
PinAI ACCGGT 1 cut(s) 207
PkrI GCNGC 2 cut(s) 1093, 1510
PleI GAGTC 3 cut(s) 1763, 1865, 2314
PpsI GAGTC 3 cut(s) 1763, 1865, 2314
Ppu21I YACGTR 2 cut(s) 1109, 2173
PscI ACATGT 1 cut(s) 379
PsiI TTATAA 1 cut(s) 1569
Psp6I CCWGG 7 cut(s) 190, 459, 523, 578, 598, 697, 1740
PspGI CCWGG 7 cut(s) 190, 459, 523, 578, 598, 697, 1740
PspN4I GGNNCC 3 cut(s) 889, 1982, 2148
PspPI GGNCC 4 cut(s) 394, 701, 1797, 1981
PstI CTGCAG 1 cut(s) 2539
PsuI RGATCY 3 cut(s) 1258, 1897, 2146
RsaI GTAC 5 cut(s) 852, 1241, 1377, 2211, 2496
RsaNI GTAC 5 cut(s) 851, 1240, 1376, 2210, 2495
RseI CAYNNNNRTG 4 cut(s) 862, 885, 1502, 1533
SaqAI TTAA 4 cut(s) 315, 405, 572, 1068
SatI GCNGC 2 cut(s) 1092, 1509
Sau3AI GATC 9 cut(s) 694, 1258, 1276, 1489, 1783, 1897, 2091, 2146, 2485
Sau96I GGNCC 4 cut(s) 394, 701, 1797, 1981
ScaI AGTACT 1 cut(s) 2211
SchI GAGTC 3 cut(s) 1763, 1865, 2315
ScrFI CCNGG 8 cut(s) 192, 461, 525, 580, 600, 699, 945, 1742
SduI GDGCHC 1 cut(s) 309
SfaNI GCATC 3 cut(s) 1915, 2324, 2470
SfcI CTRYAG 4 cut(s) 19, 507, 2246, 2535
SfuI TTCGAA 1 cut(s) 2297
SinI GGWCC 3 cut(s) 394, 1797, 1981
SmiMI CAYNNNNRTG 4 cut(s) 862, 885, 1502, 1533
SmlI CTYRAG 3 cut(s) 1451, 1873, 2139
SmoI CTYRAG 3 cut(s) 1451, 1873, 2139
SpeI ACTAGT 1 cut(s) 331
SsiI CCGC 2 cut(s) 1442, 1684
SspI AATATT 2 cut(s) 916, 1971
SspMI CTAG 7 cut(s) 201, 237, 332, 560, 1302, 1367, 1922
StyD4I CCNGG 8 cut(s) 190, 459, 523, 578, 598, 697, 943, 1740
StyI CCWWGG 1 cut(s) 1546
TaaI ACNGT 3 cut(s) 256, 938, 1797
TaiI ACGT 4 cut(s) 716, 740, 1111, 2175
TaqI TCGA 4 cut(s) 1096, 1279, 1284, 2297
TaqII GACCGA 1 cut(s) 382
TatI WGTACW 2 cut(s) 1239, 2209
TfiI GAWTC 8 cut(s) 544, 634, 976, 1281, 1852, 2294, 2299, 2369
Tru1I TTAA 4 cut(s) 315, 405, 572, 1068
Tru9I TTAA 4 cut(s) 315, 405, 572, 1068
TscAI CASTG 2 cut(s) 261, 1377
TseFI GTSAC 7 cut(s) 140, 585, 718, 866, 932, 1057, 2031
TseI GCWGC 2 cut(s) 1091, 1508
Tsp45I GTSAC 7 cut(s) 140, 585, 718, 866, 932, 1057, 2031
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 2 cut(s) 261, 1377
VpaK11BI GGWCC 3 cut(s) 394, 1797, 1981
XapI RAATTY 9 cut(s) 196, 219, 445, 1071, 1297, 1643, 1944, 1986, 2197
XbaI TCTAGA 2 cut(s) 1301, 1921
XceI RCATGY 2 cut(s) 383, 1753
XcmI CCANNNNNNNNNTGG 1 cut(s) 1553
XmiI GTMKAC 2 cut(s) 374, 940
XspI CTAG 7 cut(s) 201, 237, 332, 560, 1302, 1367, 1922
ZrmI AGTACT 1 cut(s) 2211
Zsp2I ATGCAT 1 cut(s) 2339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.