Rmu_sc0010281.1_g000001

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010281.1
OG0000112
Physical Location & Seq
Forward (+)
1 .. 1361
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010281.1_g000001.1.cds

Sequence Viewer

Length: 629 bp
atgacacaagacggtccttcttggattgggaaaagcgctttgaaattatcaacgggattgctcgtgggattttgtatcttcaccaagactcaagattgaggatcatccatagagatctgaaaactagtaatattcttctagatgctgagatgaacccaagaatttctgattttggcatggctagaatattccatggagatcaattgcaagataagacaaggcgaattgttggaacatattttgggatcataatgttggagattgtaagcggccggaaaaacaatggttctgaactagaggatccttccatgaacttgataggacgtgtttgggagctctggggagaaggcagggccttagatattgttgattcgacactgaagtcatatcagcctaatgaagtcatgagatgcatacaagttgcgctcttgtgtgtacaagaagattcaaaggaccgacctgccatgtcagccattgttttcatgttgagtggtgaagcatctcctccattgcctaagcatccggcatttgtttacagaagagattccgatgctgatgttgatccgttacatgcaaacagaactgattctataaatgacttgacaataactacaatgaaagctcgataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

208

Amino Acids

23.78

Weight (kDa)

6.24

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 381
Acc36I ACCTGC 1 cut(s) 468
AciI CCGC 1 cut(s) 269
AclWI GGATC 5 cut(s) 109, 253, 295, 308, 556
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 1 cut(s) 161
AcuI CTGAAG 1 cut(s) 400
AfaI GTAC 1 cut(s) 437
AfeI AGCGCT 1 cut(s) 37
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 2 cut(s) 43, 449
AhlI ACTAGT 1 cut(s) 124
AjiI CACGTC 1 cut(s) 325
AluBI AGCT 2 cut(s) 336, 622
AluI AGCT 2 cut(s) 336, 622
Alw21I GWGCWC 1 cut(s) 338
AlwI GGATC 5 cut(s) 109, 253, 295, 308, 556
Aor51HI AGCGCT 1 cut(s) 37
AoxI GGCC 2 cut(s) 270, 353
ApoI RAATTY 1 cut(s) 161
Asp700I GAANNNNTTC 2 cut(s) 543, 585
AspLEI GCGC 2 cut(s) 38, 426
AspS9I GGNCC 3 cut(s) 14, 353, 453
AsuHPI GGTGA 2 cut(s) 73, 505
AvaII GGWCC 2 cut(s) 14, 453
BamHI GGATCC 1 cut(s) 300
BanII GRGCYC 1 cut(s) 338
BauI CACGAG 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 338
BcuI ACTAGT 1 cut(s) 124
BfaI CTAG 4 cut(s) 125, 139, 182, 295
BfoI RGCGCY 1 cut(s) 39
BfuAI ACCTGC 1 cut(s) 468
BglII AGATCT 1 cut(s) 114
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme18I GGWCC 2 cut(s) 14, 453
BmgBI CACGTC 1 cut(s) 325
BmgT120I GGNCC 3 cut(s) 14, 353, 453
BmiI GGNNCC 1 cut(s) 302
BmsI GCATC 5 cut(s) 132, 400, 508, 528, 540
Bpu10I CCTNAGC 1 cut(s) 515
BpuEI CTTGAG 1 cut(s) 75
BsaBI GATNNNNATC 1 cut(s) 560
BsaJI CCNNGG 1 cut(s) 192
Bse3DI GCAATG 1 cut(s) 508
Bse8I GATNNNNATC 1 cut(s) 560
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 2 cut(s) 104, 519
BseJI GATNNNNATC 1 cut(s) 560
BseMI GCAATG 1 cut(s) 508
BseMII CTCAG 1 cut(s) 137
BseRI GAGGAG 1 cut(s) 494
BseX3I CGGCCG 1 cut(s) 270
Bsh1285I CGRYCG 1 cut(s) 273
BshFI GGCC 2 cut(s) 272, 355
BsiEI CGRYCG 1 cut(s) 273
BsiHKAI GWGCWC 1 cut(s) 338
BsiSI CCGG 2 cut(s) 273, 523
BsnI GGCC 2 cut(s) 272, 355
Bsp1286I GDGCHC 1 cut(s) 338
Bsp1407I TGTACA 1 cut(s) 435
Bsp143I GATC 6 cut(s) 101, 114, 198, 245, 300, 561
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 1 cut(s) 269
BspANI GGCC 2 cut(s) 272, 355
BspCNI CTCAG 1 cut(s) 138
BspHI TCATGA 1 cut(s) 404
BspLI GGNNCC 1 cut(s) 302
BspMI ACCTGC 1 cut(s) 468
BspPI GGATC 5 cut(s) 109, 253, 295, 308, 556
BsrDI GCAATG 1 cut(s) 508
BsrGI TGTACA 1 cut(s) 435
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 6 cut(s) 101, 114, 198, 245, 300, 561
BssSI CACGAG 1 cut(s) 62
BssT1I CCWWGG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 14
Bst6I CTCTTC 1 cut(s) 534
BstAUI TGTACA 1 cut(s) 435
BstDEI CTNAG 3 cut(s) 146, 357, 515
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 2 cut(s) 104, 519
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 2 cut(s) 38, 426
BstKTI GATC 6 cut(s) 104, 117, 201, 248, 303, 564
BstMBI GATC 6 cut(s) 101, 114, 198, 245, 300, 561
BstMCI CGRYCG 1 cut(s) 273
BstMWI GCNNNNNNNGC 1 cut(s) 469
BstNSI RCATGY 1 cut(s) 574
BstX2I RGATCY 2 cut(s) 114, 300
BstYI RGATCY 2 cut(s) 114, 300
BstZI CGGCCG 1 cut(s) 270
BsuRI GGCC 2 cut(s) 272, 355
BtgI CCRYGG 1 cut(s) 192
BtrI CACGTC 1 cut(s) 325
BtsCI GGATG 2 cut(s) 104, 519
BtsIMutI CAGTG 1 cut(s) 376
BveI ACCTGC 1 cut(s) 468
CciI TCATGA 1 cut(s) 404
CfoI GCGC 2 cut(s) 38, 426
Cfr13I GGNCC 3 cut(s) 14, 353, 453
Csp6I GTAC 1 cut(s) 436
CviAII CATG 7 cut(s) 177, 193, 309, 405, 465, 483, 571
CviJI RGCY 7 cut(s) 181, 272, 336, 355, 393, 472, 622
CviKI_1 RGCY 7 cut(s) 181, 272, 336, 355, 393, 472, 622
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 3 cut(s) 146, 357, 515
DpnI GATC 6 cut(s) 103, 116, 200, 247, 302, 563
DpnII GATC 6 cut(s) 101, 114, 198, 245, 300, 561
DrdI GACNNNNNNGTC 1 cut(s) 381
DseDI GACNNNNNNGTC 1 cut(s) 381
EaeI YGGCCR 1 cut(s) 270
EagI CGGCCG 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
Ecl136II GAGCTC 1 cut(s) 336
EclXI CGGCCG 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 192
Eco24I GRGCYC 1 cut(s) 338
Eco47I GGWCC 2 cut(s) 14, 453
Eco47III AGCGCT 1 cut(s) 37
Eco52I CGGCCG 1 cut(s) 270
Eco53kI GAGCTC 1 cut(s) 336
Eco57I CTGAAG 1 cut(s) 400
EcoICRI GAGCTC 1 cut(s) 336
EcoO109I RGGNCCY 1 cut(s) 353
EcoT14I CCWWGG 1 cut(s) 192
EcoT22I ATGCAT 1 cut(s) 415
EcoT38I GRGCYC 1 cut(s) 338
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 7 cut(s) 180, 196, 312, 408, 468, 486, 574
FatI CATG 7 cut(s) 176, 192, 308, 404, 464, 482, 570
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 2 cut(s) 91, 506
FriOI GRGCYC 1 cut(s) 338
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 4 cut(s) 125, 139, 182, 295
GlaI GCGC 2 cut(s) 37, 425
GluI GCNGC 1 cut(s) 270
HaeII RGCGCY 1 cut(s) 39
HaeIII GGCC 2 cut(s) 272, 355
HapII CCGG 2 cut(s) 273, 523
HhaI GCGC 2 cut(s) 38, 426
Hin1II CATG 7 cut(s) 180, 196, 312, 408, 468, 486, 574
Hin6I GCGC 2 cut(s) 36, 424
HinP1I GCGC 2 cut(s) 36, 424
HinfI GANTC 5 cut(s) 88, 370, 445, 544, 586
HpaII CCGG 2 cut(s) 273, 523
HphI GGTGA 2 cut(s) 73, 505
Hpy166II GTNNAC 2 cut(s) 436, 534
Hpy188I TCNGA 4 cut(s) 119, 168, 291, 549
Hpy188III TCNNGA 3 cut(s) 92, 139, 405
Hpy8I GTNNAC 2 cut(s) 436, 534
HpyAV CCTTC 3 cut(s) 27, 314, 340
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 3 cut(s) 207, 413, 574
HpyF10VI GCNNNNNNNGC 1 cut(s) 469
HpyF3I CTNAG 3 cut(s) 146, 357, 515
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 7 cut(s) 180, 196, 312, 408, 468, 486, 574
HspAI GCGC 2 cut(s) 36, 424
Kzo9I GATC 6 cut(s) 101, 114, 198, 245, 300, 561
LmnI GCTCC 1 cut(s) 333
LpnPI CCDG 5 cut(s) 286, 324, 336, 473, 536
LweI GCATC 5 cut(s) 132, 400, 508, 528, 540
MaeI CTAG 4 cut(s) 125, 139, 182, 295
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 1 cut(s) 566
MalI GATC 6 cut(s) 103, 116, 200, 247, 302, 563
MboI GATC 6 cut(s) 101, 114, 198, 245, 300, 561
MboII GAAGA 4 cut(s) 70, 127, 454, 551
MfeI CAATTG 1 cut(s) 202
MflI RGATCY 2 cut(s) 114, 300
MhlI GDGCHC 1 cut(s) 338
MluCI AATT 4 cut(s) 44, 161, 202, 224
MlyI GAGTC 1 cut(s) 82
MmeI TCCRAC 2 cut(s) 210, 236
MnlI CCTC 3 cut(s) 92, 291, 515
Mph1103I ATGCAT 1 cut(s) 415
MroXI GAANNNNTTC 2 cut(s) 543, 585
MspI CCGG 2 cut(s) 273, 523
MunI CAATTG 1 cut(s) 202
MwoI GCNNNNNNNGC 1 cut(s) 469
NcoI CCATGG 1 cut(s) 192
NdeII GATC 6 cut(s) 101, 114, 198, 245, 300, 561
NlaIII CATG 7 cut(s) 180, 196, 312, 408, 468, 486, 574
NlaIV GGNNCC 1 cut(s) 302
NsiI ATGCAT 1 cut(s) 415
NspI RCATGY 1 cut(s) 574
PagI TCATGA 1 cut(s) 404
PdmI GAANNNNTTC 2 cut(s) 543, 585
PfeI GAWTC 4 cut(s) 370, 445, 544, 586
PkrI GCNGC 1 cut(s) 271
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
Psp124BI GAGCTC 1 cut(s) 338
PspN4I GGNNCC 1 cut(s) 302
PspPI GGNCC 3 cut(s) 14, 353, 453
PsuI RGATCY 2 cut(s) 114, 300
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
SacI GAGCTC 1 cut(s) 338
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 6 cut(s) 101, 114, 198, 245, 300, 561
Sau96I GGNCC 3 cut(s) 14, 353, 453
SchI GAGTC 1 cut(s) 82
SduI GDGCHC 1 cut(s) 338
SetI ASST 4 cut(s) 327, 338, 462, 624
SfaNI GCATC 5 cut(s) 132, 400, 508, 528, 540
SinI GGWCC 2 cut(s) 14, 453
SmlI CTYRAG 1 cut(s) 90
SmoI CTYRAG 1 cut(s) 90
SpeI ACTAGT 1 cut(s) 124
Sse9I AATT 4 cut(s) 44, 161, 202, 224
SsiI CCGC 1 cut(s) 269
SspI AATATT 2 cut(s) 132, 188
SspMI CTAG 4 cut(s) 125, 139, 182, 295
SstI GAGCTC 1 cut(s) 338
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 14
TaiI ACGT 1 cut(s) 327
TaqI TCGA 2 cut(s) 373, 624
TaqII GACCGA 1 cut(s) 470
TasI AATT 4 cut(s) 44, 161, 202, 224
TatI WGTACW 1 cut(s) 435
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 4 cut(s) 370, 445, 544, 586
TscAI CASTG 1 cut(s) 383
TspDTI ATGAA 4 cut(s) 166, 325, 413, 471
TspGWI ACGGA 1 cut(s) 554
TspRI CASTG 1 cut(s) 383
VpaK11BI GGWCC 2 cut(s) 14, 453
XapI RAATTY 1 cut(s) 161
XbaI TCTAGA 1 cut(s) 138
XceI RCATGY 1 cut(s) 574
XmnI GAANNNNTTC 2 cut(s) 543, 585
XspI CTAG 4 cut(s) 125, 139, 182, 295
Zsp2I ATGCAT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.