Rw0G019190

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00863
OG0000112
Physical Location & Seq
Reverse (-)
8638 .. 9351
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G019190.1

Sequence Viewer

Length: 714 bp
GATGTTGATGGTGAAGTTTTGGTGTCCAAAGAAAGCAACTTTGAGTTGGGTTTCTTCAGCCCCGGCGATTCTAGCCACCGGTACGTTGGTATTTGGTATTCTCAATCTAAAATATCTGCAAAAACAGTGGTGTGGATCGCAAACAGAGACAGCCCCATCAATGATACCTCTGGAGTTCTCACAATTAACAGGTGTGGGGAATTAGCTCTTTATGCTTATAACATGGAGAGCATTCCTGTATGGTCTACAAATGTATCACAGTCGGTCCAAAACACAGACACCTTATATAGATATGTACAACTTTTAGATACTGGAAACTTAGTTGTGTTCCGGGATGGTAGAAATGGAAGCTTGATTTTGTGGCAAAGTTTTGATTATCCTACAGATACTCTAATCCCAGGTATGAAATCTGGGTTGAAATGGAAAAAAGGGCTAGATTGCCATTTAACATCTTGGAAGTCACAAGATGACCCTGGAAAGGGGGACTATGCCTATAGGGTCGATCCGAATCACAATGCTACTCTCAAATATTTTGTCTACAAGGGTTTCACTAAGTATTGCCAAATGGATGCTGGGCCATGGCCTAATTTTGTTAGTAATGCCAACGAAATGTATAGTACCTTTCCTTATAACAGCAATGATATTTCAATAGTAAGGCTGAAGGATTCCGGGTTACTTCAGCACCTAATATGGAATGATGCTGACCATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

237

Amino Acids

26.9

Weight (kDa)

5.49

Isoelectric Point (pI)

24.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 42 - 153 1.6e-32 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 219, 630
AccI GTMKAC 2 cut(s) 245, 537
AclWI GGATC 2 cut(s) 143, 497
AcuI CTGAAG 3 cut(s) 40, 662, 680
AfaI GTAC 3 cut(s) 83, 297, 619
AfiI CCNNNNNNNGG 2 cut(s) 478, 479
AgeI ACCGGT 1 cut(s) 78
AgsI TTSAA 2 cut(s) 418, 648
AjnI CCWGG 2 cut(s) 397, 472
AluBI AGCT 2 cut(s) 206, 351
AluI AGCT 2 cut(s) 206, 351
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 2 cut(s) 143, 497
AoxI GGCC 2 cut(s) 575, 581
ArsI GACNNNNNNTTYG 2 cut(s) 519, 551
AsiGI ACCGGT 1 cut(s) 78
AspS9I GGNCC 2 cut(s) 265, 575
AsuC2I CCSGG 3 cut(s) 63, 332, 670
AsuHPI GGTGA 1 cut(s) 23
AvaII GGWCC 1 cut(s) 265
BaeI ACNNNNGTAYC 4 cut(s) 73, 106, 237, 270
BccI CCATC 3 cut(s) 2, 164, 329
BciT130I CCWGG 2 cut(s) 399, 474
BcnI CCSGG 3 cut(s) 63, 332, 670
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 2 cut(s) 72, 434
BfmI CTRYAG 2 cut(s) 381, 493
Bme1390I CCNGG 5 cut(s) 63, 332, 399, 474, 670
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 2 cut(s) 265, 575
BmrFI CCNGG 5 cut(s) 63, 332, 399, 474, 670
BmsI GCATC 2 cut(s) 559, 688
BpmI CTGGAG 1 cut(s) 192
BpuMI CCSGG 3 cut(s) 63, 332, 670
BsaBI GATNNNNATC 1 cut(s) 507
BsaJI CCNNGG 4 cut(s) 61, 397, 472, 578
BsaWI WCCGGW 1 cut(s) 78
Bsc4I CCNNNNNNNGG 2 cut(s) 478, 479
Bse118I RCCGGY 1 cut(s) 78
Bse1I ACTGG 1 cut(s) 316
Bse3DI GCAATG 1 cut(s) 643
Bse8I GATNNNNATC 1 cut(s) 507
BseBI CCWGG 2 cut(s) 399, 474
BseDI CCNNGG 4 cut(s) 61, 397, 472, 578
BseGI GGATG 2 cut(s) 340, 574
BseJI GATNNNNATC 1 cut(s) 507
BseLI CCNNNNNNNGG 2 cut(s) 478, 479
BseMI GCAATG 1 cut(s) 643
BseNI ACTGG 1 cut(s) 316
BseYI CCCAGC 1 cut(s) 572
BshFI GGCC 2 cut(s) 577, 583
BshTI ACCGGT 1 cut(s) 78
BsiSI CCGG 4 cut(s) 63, 79, 331, 669
BslFI GGGAC 1 cut(s) 497
BslI CCNNNNNNNGG 2 cut(s) 478, 479
BsmAI GTCTC 1 cut(s) 141
BsmFI GGGAC 1 cut(s) 497
BsmI GAATGC 1 cut(s) 231
BsnI GGCC 2 cut(s) 577, 583
Bsp1407I TGTACA 1 cut(s) 295
Bsp143I GATC 2 cut(s) 135, 502
Bsp19I CCATGG 1 cut(s) 578
BspANI GGCC 2 cut(s) 577, 583
BspPI GGATC 2 cut(s) 143, 497
BsrDI GCAATG 1 cut(s) 643
BsrFI RCCGGY 1 cut(s) 78
BsrGI TGTACA 1 cut(s) 295
BsrI ACTGG 1 cut(s) 316
BssAI RCCGGY 1 cut(s) 78
BssECI CCNNGG 4 cut(s) 61, 397, 472, 578
BssMI GATC 2 cut(s) 135, 502
BssT1I CCWWGG 1 cut(s) 578
Bst2UI CCWGG 2 cut(s) 399, 474
Bst4CI ACNGT 2 cut(s) 127, 261
BstAUI TGTACA 1 cut(s) 295
BstDEI CTNAG 2 cut(s) 319, 552
BstDSI CCRYGG 1 cut(s) 578
BstF5I GGATG 2 cut(s) 340, 574
BstKTI GATC 2 cut(s) 138, 505
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 2 cut(s) 135, 502
BstMWI GCNNNNNNNGC 2 cut(s) 72, 212
BstNI CCWGG 2 cut(s) 399, 474
BstSCI CCNGG 5 cut(s) 61, 330, 397, 472, 668
BstSFI CTRYAG 2 cut(s) 381, 493
BsuRI GGCC 2 cut(s) 577, 583
BtgI CCRYGG 1 cut(s) 578
BtsCI GGATG 2 cut(s) 340, 574
BtsIMutI CAGTG 1 cut(s) 132
Cfr10I RCCGGY 1 cut(s) 78
Cfr13I GGNCC 2 cut(s) 265, 575
Csp6I GTAC 3 cut(s) 82, 296, 618
CspAI ACCGGT 1 cut(s) 78
CspCI CAANNNNNGTGG 2 cut(s) 108, 143
CviAII CATG 2 cut(s) 223, 579
CviJI RGCY 9 cut(s) 60, 75, 153, 206, 351, 433, 577, 583, 658
CviKI_1 RGCY 9 cut(s) 60, 75, 153, 206, 351, 433, 577, 583, 658
CviQI GTAC 3 cut(s) 82, 296, 618
DdeI CTNAG 2 cut(s) 319, 552
DpnI GATC 2 cut(s) 137, 504
DpnII GATC 2 cut(s) 135, 502
Eco130I CCWWGG 1 cut(s) 578
Eco47I GGWCC 1 cut(s) 265
Eco57I CTGAAG 3 cut(s) 40, 662, 680
EcoRII CCWGG 2 cut(s) 397, 472
EcoT14I CCWWGG 1 cut(s) 578
ErhI CCWWGG 1 cut(s) 578
FaeI CATG 2 cut(s) 226, 582
FaqI GGGAC 1 cut(s) 497
FatI CATG 2 cut(s) 222, 578
FblI GTMKAC 2 cut(s) 245, 537
FokI GGATG 2 cut(s) 347, 581
FspBI CTAG 2 cut(s) 72, 434
GsaI CCCAGC 1 cut(s) 576
GsuI CTGGAG 1 cut(s) 192
HaeIII GGCC 2 cut(s) 577, 583
HapII CCGG 4 cut(s) 63, 79, 331, 669
Hin1II CATG 2 cut(s) 226, 582
HindIII AAGCTT 1 cut(s) 349
HinfI GANTC 3 cut(s) 68, 508, 665
HpaII CCGG 4 cut(s) 63, 79, 331, 669
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 2 cut(s) 246, 538
Hpy188I TCNGA 1 cut(s) 507
Hpy188III TCNNGA 1 cut(s) 171
Hpy8I GTNNAC 2 cut(s) 246, 538
HpyAV CCTTC 1 cut(s) 655
HpyCH4III ACNGT 2 cut(s) 127, 261
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 212
HpyF3I CTNAG 2 cut(s) 319, 552
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 2 cut(s) 226, 582
Kzo9I GATC 2 cut(s) 135, 502
LweI GCATC 2 cut(s) 559, 688
MaeI CTAG 2 cut(s) 72, 434
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 459, 672
MalI GATC 2 cut(s) 137, 504
MboI GATC 2 cut(s) 135, 502
MboII GAAGA 1 cut(s) 46
MluCI AATT 3 cut(s) 183, 200, 586
MnlI CCTC 1 cut(s) 178
MseI TTAA 2 cut(s) 186, 446
MspI CCGG 4 cut(s) 63, 79, 331, 669
MspR9I CCNGG 5 cut(s) 63, 332, 399, 474, 670
Mva1269I GAATGC 1 cut(s) 231
MvaI CCWGG 2 cut(s) 399, 474
MwoI GCNNNNNNNGC 2 cut(s) 72, 212
NciI CCSGG 3 cut(s) 63, 332, 670
NcoI CCATGG 1 cut(s) 578
NdeII GATC 2 cut(s) 135, 502
NlaIII CATG 2 cut(s) 226, 582
NmuCI GTSAC 1 cut(s) 459
PctI GAATGC 1 cut(s) 231
PfeI GAWTC 3 cut(s) 68, 508, 665
PfoI TCCNGGA 1 cut(s) 330
PinAI ACCGGT 1 cut(s) 78
PsiI TTATAA 2 cut(s) 219, 630
Psp6I CCWGG 2 cut(s) 397, 472
PspFI CCCAGC 1 cut(s) 572
PspGI CCWGG 2 cut(s) 397, 472
PspPI GGNCC 2 cut(s) 265, 575
RsaI GTAC 3 cut(s) 83, 297, 619
RsaNI GTAC 3 cut(s) 82, 296, 618
SaqAI TTAA 2 cut(s) 186, 446
Sau3AI GATC 2 cut(s) 135, 502
Sau96I GGNCC 2 cut(s) 265, 575
ScrFI CCNGG 5 cut(s) 63, 332, 399, 474, 670
SetI ASST 9 cut(s) 87, 170, 194, 208, 284, 353, 403, 623, 687
SfaNI GCATC 2 cut(s) 559, 688
SfcI CTRYAG 2 cut(s) 381, 493
SinI GGWCC 1 cut(s) 265
Sse9I AATT 3 cut(s) 183, 200, 586
SspI AATATT 1 cut(s) 530
SspMI CTAG 2 cut(s) 72, 434
StyD4I CCNGG 5 cut(s) 61, 330, 397, 472, 668
StyI CCWWGG 1 cut(s) 578
TaaI ACNGT 2 cut(s) 127, 261
TaiI ACGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 501
TaqII GACCGA 1 cut(s) 253
TasI AATT 3 cut(s) 183, 200, 586
TatI WGTACW 1 cut(s) 295
TfiI GAWTC 3 cut(s) 68, 508, 665
Tru1I TTAA 2 cut(s) 186, 446
Tru9I TTAA 2 cut(s) 186, 446
TscAI CASTG 1 cut(s) 132
TseFI GTSAC 1 cut(s) 459
Tsp45I GTSAC 1 cut(s) 459
TspDTI ATGAA 1 cut(s) 419
TspRI CASTG 1 cut(s) 132
VpaK11BI GGWCC 1 cut(s) 265
XcmI CCANNNNNNNNNTGG 2 cut(s) 83, 569
XmiI GTMKAC 2 cut(s) 245, 537
XspI CTAG 2 cut(s) 72, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.