RchiOBHm_Chr5g0046221

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000112
Physical Location & Seq
Forward (+)
42287150 .. 42287824
675 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32423

Sequence Viewer

Length: 675 bp
ATGCCATTGGTTCATTCCTACAGAATTGAAAATGCCGAGAAAATGGTTTTGAAAGCTCTGCTTCTCTTTCTCTTCTTTCAGTTCTGCACTTCCAGGGACACCATGAGAGGGAACGAAGGACAATTGAAGGATGCTGATGGTGACTATTTAGTGTCCAAAGAAAGCAAGTTTGAATTGGGTTTCTTCAGCCCCGGAAATTCTAGCTACCGGTATGTTGGAATCTGGTATTCTCAGACTAGAGTACCTAATAAAACAGTGGTGTGGATTGCAAACAGGAACAATCCCATCAATGATACCTCTGGTGTGCTCACAATGAACAGGTATGGAGAACTAGTCCTTTATGCTTATAACATGGAGAGCAGCCCTATATGGTCCACAAATGTGTCGCGGTCGGTTCAAAATGTTAACACAAGCACTTTATCTGCACAACTTTTGGATACAGGAAATTTAGTTGTGTTCCAGGATGATAAAAATGAAATCTTTATATGGCAAAGTTTTGATTATCCTATAGATACTTTAATTCCAGGTATGAAAGTTGGGGTGAATTGGAAAACTGGGCAAGAATGGGTTTTAACATCTTGGAAGTCACAAGATGACCCTGGAACTGGGGACTATACCCAGAGGCTAAGTTCAGATCATAATGCATCTCCCCAGTTTTTTTGTATAAAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

224

Amino Acids

25.59

Weight (kDa)

5.42

Isoelectric Point (pI)

27.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 85 - 195 7.7e-36 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 348
AccII CGCG 1 cut(s) 388
AciI CCGC 1 cut(s) 388
AcsI RAATTY 2 cut(s) 196, 445
AcuI CTGAAG 1 cut(s) 169
AfaI GTAC 1 cut(s) 243
AfiI CCNNNNNNNGG 2 cut(s) 108, 605
AgeI ACCGGT 1 cut(s) 207
AgsI TTSAA 5 cut(s) 29, 52, 127, 173, 398
AhlI ACTAGT 1 cut(s) 331
AjnI CCWGG 4 cut(s) 92, 459, 523, 598
AleI CACNNNNGTG 1 cut(s) 380
AluBI AGCT 2 cut(s) 56, 204
AluI AGCT 2 cut(s) 56, 204
Alw21I GWGCWC 1 cut(s) 309
ApeKI GCWGC 1 cut(s) 360
ApoI RAATTY 2 cut(s) 196, 445
AsiGI ACCGGT 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 372
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 2 cut(s) 152, 553
AvaII GGWCC 1 cut(s) 372
BaeI ACNNNNGTAYC 2 cut(s) 225, 258
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 372
BccI CCATC 2 cut(s) 131, 293
BciT130I CCWGG 4 cut(s) 94, 461, 525, 600
BciVI GTATCC 1 cut(s) 430
BcnI CCSGG 1 cut(s) 192
BcuI ACTAGT 1 cut(s) 331
BfaI CTAG 3 cut(s) 201, 237, 332
BfmI CTRYAG 2 cut(s) 19, 507
BfuI GTATCC 1 cut(s) 430
BisI GCNGC 1 cut(s) 361
BlsI GCNGC 1 cut(s) 362
Bme1390I CCNGG 5 cut(s) 94, 192, 461, 525, 600
Bme18I GGWCC 1 cut(s) 372
BmgT120I GGNCC 1 cut(s) 372
BmrFI CCNGG 5 cut(s) 94, 192, 461, 525, 600
BmrI ACTGGG 3 cut(s) 564, 615, 646
BmsI GCATC 2 cut(s) 121, 653
BmuI ACTGGG 3 cut(s) 564, 615, 646
BpuMI CCSGG 1 cut(s) 192
BsaJI CCNNGG 3 cut(s) 93, 190, 598
BsaWI WCCGGW 1 cut(s) 207
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 605
Bse118I RCCGGY 1 cut(s) 207
Bse1I ACTGG 3 cut(s) 559, 610, 652
BseBI CCWGG 4 cut(s) 94, 461, 525, 600
BseDI CCNNGG 3 cut(s) 93, 190, 598
BseGI GGATG 2 cut(s) 136, 469
BseLI CCNNNNNNNGG 2 cut(s) 108, 605
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 3 cut(s) 559, 610, 652
BseXI GCAGC 1 cut(s) 372
BsgI GTGCAG 2 cut(s) 70, 408
Bsh1236I CGCG 1 cut(s) 388
Bsh1285I CGRYCG 1 cut(s) 392
BshTI ACCGGT 1 cut(s) 207
BsiEI CGRYCG 1 cut(s) 392
BsiHKAI GWGCWC 1 cut(s) 309
BsiSI CCGG 2 cut(s) 192, 208
BslFI GGGAC 2 cut(s) 110, 623
BslI CCNNNNNNNGG 2 cut(s) 108, 605
BsmFI GGGAC 2 cut(s) 110, 623
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 1 cut(s) 634
BspACI CCGC 1 cut(s) 388
BspCNI CTCAG 1 cut(s) 244
BspFNI CGCG 1 cut(s) 388
BsrFI RCCGGY 1 cut(s) 207
BsrI ACTGG 3 cut(s) 559, 610, 652
BssAI RCCGGY 1 cut(s) 207
BssECI CCNNGG 3 cut(s) 93, 190, 598
BssMI GATC 1 cut(s) 634
Bst2UI CCWGG 4 cut(s) 94, 461, 525, 600
Bst4CI ACNGT 1 cut(s) 256
Bst6I CTCTTC 1 cut(s) 77
BstDEI CTNAG 2 cut(s) 231, 626
BstF5I GGATG 2 cut(s) 136, 469
BstFNI CGCG 1 cut(s) 388
BstKTI GATC 1 cut(s) 637
BstMBI GATC 1 cut(s) 634
BstMCI CGRYCG 1 cut(s) 392
BstNI CCWGG 4 cut(s) 94, 461, 525, 600
BstSCI CCNGG 5 cut(s) 92, 190, 459, 523, 598
BstSFI CTRYAG 2 cut(s) 19, 507
BstUI CGCG 1 cut(s) 388
BstV1I GCAGC 1 cut(s) 372
BsuI GTATCC 1 cut(s) 430
BtsCI GGATG 2 cut(s) 136, 469
BtsIMutI CAGTG 1 cut(s) 261
Cfr10I RCCGGY 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 372
Csp6I GTAC 1 cut(s) 242
CspAI ACCGGT 1 cut(s) 207
CviAII CATG 2 cut(s) 103, 352
CviJI RGCY 5 cut(s) 56, 189, 204, 363, 625
CviKI_1 RGCY 5 cut(s) 56, 189, 204, 363, 625
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 2 cut(s) 231, 626
DpnI GATC 1 cut(s) 636
DpnII GATC 1 cut(s) 634
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 372
Eco57I CTGAAG 1 cut(s) 169
EcoRII CCWGG 4 cut(s) 92, 459, 523, 598
EcoT22I ATGCAT 1 cut(s) 646
FaeI CATG 2 cut(s) 106, 355
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FaqI GGGAC 2 cut(s) 110, 623
FatI CATG 2 cut(s) 102, 351
Fnu4HI GCNGC 1 cut(s) 361
FokI GGATG 2 cut(s) 143, 476
Fsp4HI GCNGC 1 cut(s) 361
FspBI CTAG 3 cut(s) 201, 237, 332
GluI GCNGC 1 cut(s) 361
HapII CCGG 2 cut(s) 192, 208
Hin1II CATG 2 cut(s) 106, 355
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 1 cut(s) 219
HpaI GTTAAC 1 cut(s) 406
HpaII CCGG 2 cut(s) 192, 208
HphI GGTGA 2 cut(s) 152, 553
Hpy166II GTNNAC 2 cut(s) 375, 406
Hpy188I TCNGA 2 cut(s) 234, 634
Hpy8I GTNNAC 2 cut(s) 375, 406
HpyAV CCTTC 2 cut(s) 110, 121
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4V TGCA 4 cut(s) 87, 269, 425, 644
HpyF3I CTNAG 2 cut(s) 231, 626
Hsp92II CATG 2 cut(s) 106, 355
KspAI GTTAAC 1 cut(s) 406
Kzo9I GATC 1 cut(s) 634
Lsp1109I GCAGC 1 cut(s) 372
LweI GCATC 2 cut(s) 121, 653
MaeI CTAG 3 cut(s) 201, 237, 332
MaeIII GTNAC 2 cut(s) 140, 585
MalI GATC 1 cut(s) 636
MboI GATC 1 cut(s) 634
MboII GAAGA 2 cut(s) 64, 175
MfeI CAATTG 1 cut(s) 122
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 7 cut(s) 24, 122, 173, 196, 445, 519, 544
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 3 cut(s) 101, 307, 615
Mph1103I ATGCAT 1 cut(s) 646
MseI TTAA 3 cut(s) 405, 518, 572
MslI CAYNNNNRTG 1 cut(s) 380
MspI CCGG 2 cut(s) 192, 208
MspR9I CCNGG 5 cut(s) 94, 192, 461, 525, 600
MunI CAATTG 1 cut(s) 122
MvaI CCWGG 4 cut(s) 94, 461, 525, 600
MvnI CGCG 1 cut(s) 388
NciI CCSGG 1 cut(s) 192
NdeII GATC 1 cut(s) 634
NlaIII CATG 2 cut(s) 106, 355
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 140, 585
NsiI ATGCAT 1 cut(s) 646
OliI CACNNNNGTG 1 cut(s) 380
PfeI GAWTC 1 cut(s) 219
PfoI TCCNGGA 1 cut(s) 459
PinAI ACCGGT 1 cut(s) 207
PkrI GCNGC 1 cut(s) 362
PsiI TTATAA 1 cut(s) 348
Psp6I CCWGG 4 cut(s) 92, 459, 523, 598
PspGI CCWGG 4 cut(s) 92, 459, 523, 598
PspPI GGNCC 1 cut(s) 372
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 380
SaqAI TTAA 3 cut(s) 405, 518, 572
SatI GCNGC 1 cut(s) 361
Sau3AI GATC 1 cut(s) 634
Sau96I GGNCC 1 cut(s) 372
ScrFI CCNGG 5 cut(s) 94, 192, 461, 525, 600
SduI GDGCHC 1 cut(s) 309
SetI ASST 7 cut(s) 58, 206, 247, 299, 323, 529, 672
SfaNI GCATC 2 cut(s) 121, 653
SfcI CTRYAG 2 cut(s) 19, 507
SinI GGWCC 1 cut(s) 372
SmiMI CAYNNNNRTG 1 cut(s) 380
SpeI ACTAGT 1 cut(s) 331
Sse9I AATT 7 cut(s) 24, 122, 173, 196, 445, 519, 544
SsiI CCGC 1 cut(s) 388
SspMI CTAG 3 cut(s) 201, 237, 332
StyD4I CCNGG 5 cut(s) 92, 190, 459, 523, 598
TaaI ACNGT 1 cut(s) 256
TasI AATT 7 cut(s) 24, 122, 173, 196, 445, 519, 544
TfiI GAWTC 1 cut(s) 219
Tru1I TTAA 3 cut(s) 405, 518, 572
Tru9I TTAA 3 cut(s) 405, 518, 572
TscAI CASTG 1 cut(s) 261
TseFI GTSAC 2 cut(s) 140, 585
TseI GCWGC 1 cut(s) 360
Tsp45I GTSAC 2 cut(s) 140, 585
TspDTI ATGAA 3 cut(s) 329, 489, 545
TspRI CASTG 1 cut(s) 261
VpaK11BI GGWCC 1 cut(s) 372
XapI RAATTY 2 cut(s) 196, 445
XspI CTAG 3 cut(s) 201, 237, 332
Zsp2I ATGCAT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.