FvH4_6g00300

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000112
Physical Location & Seq
Forward (+)
229478 .. 230392
915 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00300.t1

Sequence Viewer

Length: 765 bp
ATGTATCGCAAAGCTCTGTTTCTCTTCCTCCTCTTTCAGTTCTGCACTTCCAGGGACACCATAAAAGGGAACAAAGAGCAACTGAAGGATGTTGATGGTGACTATTTAGTGTCCAGAGAAAGCAAGTTTGAGTTGGGGTTCTTCAGCCCTGGAAATTCTTGCTACCGGTATGTTGGAATCTGGTATTCTCAGACTAGAGTATCTGAAAAAACAGTGGTGTGGGTTGCAAACAGGAACAATCCCATCAATGATACCTCTGGTGTGCTCACAATCAACAGGTATGGAGAACTGGTCCTTTATGCTTACAGTGTGGAAAATGATCCTATATGGTTCGCCAATGTGTCGCAGTCGGTCCAAAATGTTAACACTAGCACTTTATCTGCACAGCTTTTGGATTCAGGAAACTTAGTTGTGTTCCAGGATGATACAAATGACATCTATATGTGGCAAAGCTTTGATCATCCTACAGATACTCAAATTCCAGGTATGAAACTTGGGGTGAATTGGAAAACTGGGCAAGAATGGGTTTTAACATCTTGGAAGTCACAAGATGACCCTGGAACTGGTGCAATTACAAGAACAATAGTTACTGATTCTGCGGTGAAGCGCCTTACTTGGGATGATGGCAAACTTCAATGGAAGGAAGACTTCTCTGCACCAAAGTCCCGGTGTGACTGGTATGGACGGTGTGGTGCCAACAGCAAATGTAGCCCTGACAATGTTAATCTGTTTGAGTGTGAATGCTTACCAGGGTATGAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

255

Amino Acids

28.99

Weight (kDa)

4.93

Isoelectric Point (pI)

28.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 71 - 181 2.6e-35 D-mannose binding lectin
S_locus_glycop PF00954 191 - 254 7.7e-12 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 692
AciI CCGC 1 cut(s) 599
AclWI GGATC 1 cut(s) 314
AcsI RAATTY 2 cut(s) 154, 477
AcuI CTGAAG 2 cut(s) 104, 127
AfiI CCNNNNNNNGG 3 cut(s) 66, 563, 616
AgeI ACCGGT 1 cut(s) 165
AgsI TTSAA 1 cut(s) 635
AjnI CCWGG 6 cut(s) 50, 148, 417, 481, 556, 748
AluBI AGCT 3 cut(s) 14, 388, 453
AluI AGCT 3 cut(s) 14, 388, 453
Alw21I GWGCWC 1 cut(s) 267
AlwI GGATC 1 cut(s) 314
ApoI RAATTY 2 cut(s) 154, 477
AsiGI ACCGGT 1 cut(s) 165
AspLEI GCGC 1 cut(s) 609
AspS9I GGNCC 2 cut(s) 292, 352
AsuC2I CCSGG 1 cut(s) 667
AsuHPI GGTGA 3 cut(s) 110, 511, 613
AvaII GGWCC 2 cut(s) 292, 352
BaeI ACNNNNGTAYC 2 cut(s) 183, 216
BanI GGYRCC 1 cut(s) 692
BanII GRGCYC 1 cut(s) 762
BbsI GAAGAC 1 cut(s) 651
Bbv12I GWGCWC 1 cut(s) 267
BccI CCATC 3 cut(s) 89, 251, 617
BciT130I CCWGG 6 cut(s) 52, 150, 419, 483, 558, 750
BclI TGATCA 1 cut(s) 457
BcnI CCSGG 1 cut(s) 667
BfaI CTAG 2 cut(s) 195, 369
BfmI CTRYAG 1 cut(s) 465
BfoI RGCGCY 1 cut(s) 610
Bme1390I CCNGG 7 cut(s) 52, 150, 419, 483, 558, 667, 750
Bme18I GGWCC 2 cut(s) 292, 352
BmgT120I GGNCC 2 cut(s) 292, 352
BmiI GGNNCC 1 cut(s) 694
BmrFI CCNGG 7 cut(s) 52, 150, 419, 483, 558, 667, 750
BmrI ACTGGG 1 cut(s) 522
BmuI ACTGGG 1 cut(s) 522
BpiI GAAGAC 1 cut(s) 651
BpuMI CCSGG 1 cut(s) 667
BsaJI CCNNGG 4 cut(s) 51, 148, 556, 749
BsaWI WCCGGW 1 cut(s) 165
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 563, 616
Bse118I RCCGGY 1 cut(s) 165
Bse1I ACTGG 4 cut(s) 294, 517, 568, 680
BseBI CCWGG 6 cut(s) 52, 150, 419, 483, 558, 750
BseDI CCNNGG 4 cut(s) 51, 148, 556, 749
BseGI GGATG 4 cut(s) 94, 427, 460, 625
BseLI CCNNNNNNNGG 3 cut(s) 66, 563, 616
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 4 cut(s) 294, 517, 568, 680
BseRI GAGGAG 1 cut(s) 20
BsgI GTGCAG 3 cut(s) 28, 366, 639
BshNI GGYRCC 1 cut(s) 692
BshTI ACCGGT 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 267
BsiSI CCGG 2 cut(s) 166, 667
BslFI GGGAC 2 cut(s) 68, 649
BslI CCNNNNNNNGG 3 cut(s) 66, 563, 616
BsmFI GGGAC 2 cut(s) 68, 649
BsmI GAATGC 1 cut(s) 746
Bsp1286I GDGCHC 2 cut(s) 267, 762
Bsp143I GATC 2 cut(s) 319, 457
BspACI CCGC 1 cut(s) 599
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 694
BspPI GGATC 1 cut(s) 314
BspT107I GGYRCC 1 cut(s) 692
BsrFI RCCGGY 1 cut(s) 165
BsrI ACTGG 4 cut(s) 294, 517, 568, 680
BssAI RCCGGY 1 cut(s) 165
BssECI CCNNGG 4 cut(s) 51, 148, 556, 749
BssMI GATC 2 cut(s) 319, 457
Bst2UI CCWGG 6 cut(s) 52, 150, 419, 483, 558, 750
Bst4CI ACNGT 3 cut(s) 214, 308, 687
Bst6I CTCTTC 1 cut(s) 29
BstDEI CTNAG 2 cut(s) 189, 406
BstF5I GGATG 4 cut(s) 94, 427, 460, 625
BstH2I RGCGCY 1 cut(s) 610
BstHHI GCGC 1 cut(s) 609
BstKTI GATC 2 cut(s) 322, 460
BstMBI GATC 2 cut(s) 319, 457
BstMWI GCNNNNNNNGC 1 cut(s) 708
BstNI CCWGG 6 cut(s) 52, 150, 419, 483, 558, 750
BstSCI CCNGG 7 cut(s) 50, 148, 417, 481, 556, 665, 748
BstSFI CTRYAG 1 cut(s) 465
BstV2I GAAGAC 1 cut(s) 651
BtsCI GGATG 4 cut(s) 94, 427, 460, 625
BtsIMutI CAGTG 2 cut(s) 219, 313
CfoI GCGC 1 cut(s) 609
Cfr10I RCCGGY 1 cut(s) 165
Cfr13I GGNCC 2 cut(s) 292, 352
CspAI ACCGGT 1 cut(s) 165
CviJI RGCY 6 cut(s) 14, 147, 388, 453, 711, 760
CviKI_1 RGCY 6 cut(s) 14, 147, 388, 453, 711, 760
DdeI CTNAG 2 cut(s) 189, 406
DpnI GATC 2 cut(s) 321, 459
DpnII GATC 2 cut(s) 319, 457
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 762
Eco47I GGWCC 2 cut(s) 292, 352
Eco57I CTGAAG 2 cut(s) 104, 127
EcoRII CCWGG 6 cut(s) 50, 148, 417, 481, 556, 748
EcoT38I GRGCYC 1 cut(s) 762
FalI AAGNNNNNCTT 2 cut(s) 632, 664
FaqI GGGAC 2 cut(s) 68, 649
FbaI TGATCA 1 cut(s) 457
FokI GGATG 4 cut(s) 101, 434, 447, 632
FriOI GRGCYC 1 cut(s) 762
FspBI CTAG 2 cut(s) 195, 369
GlaI GCGC 1 cut(s) 608
HaeII RGCGCY 1 cut(s) 610
HapII CCGG 2 cut(s) 166, 667
HhaI GCGC 1 cut(s) 609
Hin6I GCGC 1 cut(s) 607
HinP1I GCGC 1 cut(s) 607
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HindIII AAGCTT 1 cut(s) 451
HinfI GANTC 3 cut(s) 177, 395, 593
HpaI GTTAAC 1 cut(s) 364
HpaII CCGG 2 cut(s) 166, 667
HphI GGTGA 3 cut(s) 110, 511, 613
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 2 cut(s) 192, 205
Hpy188III TCNNGA 2 cut(s) 114, 399
Hpy8I GTNNAC 1 cut(s) 364
HpyAV CCTTC 2 cut(s) 79, 634
HpyCH4III ACNGT 3 cut(s) 214, 308, 687
HpyCH4V TGCA 5 cut(s) 45, 227, 383, 569, 656
HpyF10VI GCNNNNNNNGC 1 cut(s) 708
HpyF3I CTNAG 2 cut(s) 189, 406
HspAI GCGC 1 cut(s) 607
Ksp22I TGATCA 1 cut(s) 457
KspAI GTTAAC 1 cut(s) 364
Kzo9I GATC 2 cut(s) 319, 457
MaeI CTAG 2 cut(s) 195, 369
MaeIII GTNAC 4 cut(s) 98, 543, 586, 671
MalI GATC 2 cut(s) 321, 459
MboI GATC 2 cut(s) 319, 457
MboII GAAGA 3 cut(s) 16, 133, 656
MhlI GDGCHC 2 cut(s) 267, 762
MluCI AATT 4 cut(s) 154, 477, 502, 570
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 3 cut(s) 38, 41, 265
MseI TTAA 3 cut(s) 363, 530, 723
MslI CAYNNNNRTG 1 cut(s) 440
MspI CCGG 2 cut(s) 166, 667
MspR9I CCNGG 7 cut(s) 52, 150, 419, 483, 558, 667, 750
Mva1269I GAATGC 1 cut(s) 746
MvaI CCWGG 6 cut(s) 52, 150, 419, 483, 558, 750
MwoI GCNNNNNNNGC 1 cut(s) 708
NciI CCSGG 1 cut(s) 667
NdeII GATC 2 cut(s) 319, 457
NlaIV GGNNCC 1 cut(s) 694
NmuCI GTSAC 3 cut(s) 98, 543, 671
PctI GAATGC 1 cut(s) 746
PfeI GAWTC 3 cut(s) 177, 395, 593
PfoI TCCNGGA 1 cut(s) 417
PinAI ACCGGT 1 cut(s) 165
Psp6I CCWGG 6 cut(s) 50, 148, 417, 481, 556, 748
PspGI CCWGG 6 cut(s) 50, 148, 417, 481, 556, 748
PspN4I GGNNCC 1 cut(s) 694
PspPI GGNCC 2 cut(s) 292, 352
PsrI GAACNNNNNNTAC 2 cut(s) 571, 603
RseI CAYNNNNRTG 1 cut(s) 440
SaqAI TTAA 3 cut(s) 363, 530, 723
Sau3AI GATC 2 cut(s) 319, 457
Sau96I GGNCC 2 cut(s) 292, 352
ScrFI CCNGG 7 cut(s) 52, 150, 419, 483, 558, 667, 750
SduI GDGCHC 2 cut(s) 267, 762
SetI ASST 6 cut(s) 16, 257, 281, 390, 455, 487
SfcI CTRYAG 1 cut(s) 465
SinI GGWCC 2 cut(s) 292, 352
SmiMI CAYNNNNRTG 1 cut(s) 440
Sse9I AATT 4 cut(s) 154, 477, 502, 570
SsiI CCGC 1 cut(s) 599
SspMI CTAG 2 cut(s) 195, 369
StyD4I CCNGG 7 cut(s) 50, 148, 417, 481, 556, 665, 748
TaaI ACNGT 3 cut(s) 214, 308, 687
TaqII GACCGA 1 cut(s) 340
TasI AATT 4 cut(s) 154, 477, 502, 570
TfiI GAWTC 3 cut(s) 177, 395, 593
Tru1I TTAA 3 cut(s) 363, 530, 723
Tru9I TTAA 3 cut(s) 363, 530, 723
TscAI CASTG 2 cut(s) 219, 313
TseFI GTSAC 3 cut(s) 98, 543, 671
Tsp45I GTSAC 3 cut(s) 98, 543, 671
TspDTI ATGAA 1 cut(s) 503
TspRI CASTG 2 cut(s) 219, 313
VpaK11BI GGWCC 2 cut(s) 292, 352
XapI RAATTY 2 cut(s) 154, 477
XspI CTAG 2 cut(s) 195, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.