FvH4_3g03322

serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
1802085 .. 1802574
490 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g03322.t1

Sequence Viewer

Length: 318 bp
ATGTTTCGCAGAGCTCTGTTTCTCTTCCTCCTCTTTCAGTTCTGCACTTCCAGGGACACCATAAGAGGGAACGAAGAGCAACTGAAGGATGTTGATGGTGACTATTTAGTGTCCAGAGAAAGCAAGTTTGAGTTGGGGTTCTTCAGCCCTGGAAATTCTAGCTACCGGTATGTTGGAATCTGGTATTCTCAGACTAGAGTATCTGAAAAAACAGTGGTGTGGGTTGCAAACAGGAACAATCCCATCAATGATACGTCTGGTGTGCTCACAATCAACAGAGTTTTGATCATCCTACAGATACTCTACTTCAAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

106

Amino Acids

12.31

Weight (kDa)

9.25

Isoelectric Point (pI)

31.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 71 - 93 2.6e-06 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 2 cut(s) 104, 127
AfiI CCNNNNNNNGG 1 cut(s) 66
AgeI ACCGGT 1 cut(s) 165
AgsI TTSAA 1 cut(s) 310
AjnI CCWGG 2 cut(s) 50, 148
AluBI AGCT 2 cut(s) 14, 162
AluI AGCT 2 cut(s) 14, 162
Alw21I GWGCWC 2 cut(s) 16, 267
ApoI RAATTY 1 cut(s) 154
AsiGI ACCGGT 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 110
BaeI ACNNNNGTAYC 2 cut(s) 183, 216
BanII GRGCYC 1 cut(s) 16
Bbv12I GWGCWC 2 cut(s) 16, 267
BccI CCATC 2 cut(s) 89, 251
BciT130I CCWGG 2 cut(s) 52, 150
BclI TGATCA 1 cut(s) 285
BfaI CTAG 2 cut(s) 159, 195
BfmI CTRYAG 1 cut(s) 293
Bme1390I CCNGG 2 cut(s) 52, 150
BmrFI CCNGG 2 cut(s) 52, 150
BsaJI CCNNGG 2 cut(s) 51, 148
BsaWI WCCGGW 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse118I RCCGGY 1 cut(s) 165
BseBI CCWGG 2 cut(s) 52, 150
BseDI CCNNGG 2 cut(s) 51, 148
BseGI GGATG 2 cut(s) 94, 288
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 203
BseRI GAGGAG 1 cut(s) 20
BsgI GTGCAG 1 cut(s) 28
BshTI ACCGGT 1 cut(s) 165
BsiHKAI GWGCWC 2 cut(s) 16, 267
BsiSI CCGG 1 cut(s) 166
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 68
Bsp1286I GDGCHC 2 cut(s) 16, 267
Bsp143I GATC 1 cut(s) 285
BspCNI CTCAG 1 cut(s) 202
BspQI GCTCTTC 1 cut(s) 69
BsrFI RCCGGY 1 cut(s) 165
BssAI RCCGGY 1 cut(s) 165
BssECI CCNNGG 2 cut(s) 51, 148
BssMI GATC 1 cut(s) 285
Bst2UI CCWGG 2 cut(s) 52, 150
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 2 cut(s) 29, 69
BstDEI CTNAG 1 cut(s) 189
BstF5I GGATG 2 cut(s) 94, 288
BstKTI GATC 1 cut(s) 288
BstMBI GATC 1 cut(s) 285
BstNI CCWGG 2 cut(s) 52, 150
BstSCI CCNGG 2 cut(s) 50, 148
BstSFI CTRYAG 1 cut(s) 293
BtsCI GGATG 2 cut(s) 94, 288
BtsIMutI CAGTG 1 cut(s) 219
Cfr10I RCCGGY 1 cut(s) 165
CspAI ACCGGT 1 cut(s) 165
CviJI RGCY 3 cut(s) 14, 147, 162
CviKI_1 RGCY 3 cut(s) 14, 147, 162
DdeI CTNAG 1 cut(s) 189
DpnI GATC 1 cut(s) 287
DpnII GATC 1 cut(s) 285
Eam1104I CTCTTC 2 cut(s) 29, 69
EarI CTCTTC 2 cut(s) 29, 69
Ecl136II GAGCTC 1 cut(s) 14
Eco24I GRGCYC 1 cut(s) 16
Eco53kI GAGCTC 1 cut(s) 14
Eco57I CTGAAG 2 cut(s) 104, 127
EcoICRI GAGCTC 1 cut(s) 14
EcoRII CCWGG 2 cut(s) 50, 148
EcoT38I GRGCYC 1 cut(s) 16
FaiI YATR 3 cut(s) 62, 171, 316
FaqI GGGAC 1 cut(s) 68
FbaI TGATCA 1 cut(s) 285
FokI GGATG 2 cut(s) 101, 275
FriOI GRGCYC 1 cut(s) 16
FspBI CTAG 2 cut(s) 159, 195
HapII CCGG 1 cut(s) 166
HinfI GANTC 1 cut(s) 177
HpaII CCGG 1 cut(s) 166
HphI GGTGA 1 cut(s) 110
Hpy188I TCNGA 2 cut(s) 192, 205
Hpy188III TCNNGA 1 cut(s) 114
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 254
HpyCH4V TGCA 2 cut(s) 45, 227
HpyF3I CTNAG 1 cut(s) 189
HpySE526I ACGT 1 cut(s) 254
Ksp22I TGATCA 1 cut(s) 285
Kzo9I GATC 1 cut(s) 285
LguI GCTCTTC 1 cut(s) 69
LpnPI CCDG 9 cut(s) 37, 64, 127, 135, 162, 166, 179, 217, 243
MaeI CTAG 2 cut(s) 159, 195
MaeII ACGT 1 cut(s) 254
MaeIII GTNAC 1 cut(s) 98
MalI GATC 1 cut(s) 287
MboI GATC 1 cut(s) 285
MboII GAAGA 3 cut(s) 16, 86, 133
MhlI GDGCHC 2 cut(s) 16, 267
MluCI AATT 1 cut(s) 154
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 3 cut(s) 38, 41, 59
MspI CCGG 1 cut(s) 166
MspR9I CCNGG 2 cut(s) 52, 150
MvaI CCWGG 2 cut(s) 52, 150
NdeII GATC 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 98
PciSI GCTCTTC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 177
PinAI ACCGGT 1 cut(s) 165
Psp124BI GAGCTC 1 cut(s) 16
Psp6I CCWGG 2 cut(s) 50, 148
PspGI CCWGG 2 cut(s) 50, 148
SacI GAGCTC 1 cut(s) 16
SapI GCTCTTC 1 cut(s) 69
Sau3AI GATC 1 cut(s) 285
ScrFI CCNGG 2 cut(s) 52, 150
SduI GDGCHC 2 cut(s) 16, 267
SetI ASST 4 cut(s) 16, 164, 257, 315
SfcI CTRYAG 1 cut(s) 293
Sse9I AATT 1 cut(s) 154
SspMI CTAG 2 cut(s) 159, 195
SstI GAGCTC 1 cut(s) 16
StyD4I CCNGG 2 cut(s) 50, 148
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 1 cut(s) 257
TasI AATT 1 cut(s) 154
TfiI GAWTC 1 cut(s) 177
TscAI CASTG 1 cut(s) 219
TseFI GTSAC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 98
TspRI CASTG 1 cut(s) 219
XapI RAATTY 1 cut(s) 154
XspI CTAG 2 cut(s) 159, 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.