Rw3G005880

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000112
Physical Location & Seq
Forward (+)
5278234 .. 5278750
517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G005880.1

Sequence Viewer

Length: 375 bp
ATGCCACTGTTTCACACCTACAAAGTTGCTACTGCGCAGAAAATGTTTTTCAAAGCTCTGCTTCTCTTCCTCCTCTTCCGATTTTGCGAATCCAGGGACACCATAACATGGAACCAAGAACAACTGAAGGATGATGGTGGAGTTTTAGTGTCCAAACAGAGCAAGTTCGAATTGGGTTTCTTCAGCCCCGGAAATTCTAGCTACCGGTATGTCGGAATTTGGTATTCTCAGACTAAAGTATCTAATAAAACAGTGGTGTGGGTTGCAAACAGGAACAATCCCATCAATGATACCTCTGGTGTGCTCACAATCAACAGGATGATAATAATGAAATCTCTATATGGCAAAGTTTTGATCATCCTACAGATACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

124

Amino Acids

14.32

Weight (kDa)

9.84

Isoelectric Point (pI)

29.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 84 - 106 2.4e-06 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 36
AccB7I CCANNNNNTGG 1 cut(s) 108
AcsI RAATTY 2 cut(s) 193, 216
AcuI CTGAAG 2 cut(s) 146, 166
AfiI CCNNNNNNNGG 1 cut(s) 108
AgeI ACCGGT 1 cut(s) 204
AgsI TTSAA 1 cut(s) 52
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 2 cut(s) 56, 201
AluI AGCT 2 cut(s) 56, 201
Alw21I GWGCWC 1 cut(s) 306
ApoI RAATTY 2 cut(s) 193, 216
AsiGI ACCGGT 1 cut(s) 204
AspLEI GCGC 1 cut(s) 37
AsuC2I CCSGG 1 cut(s) 189
AsuII TTCGAA 1 cut(s) 168
BaeI ACNNNNGTAYC 2 cut(s) 222, 255
Bbv12I GWGCWC 1 cut(s) 306
BccI CCATC 2 cut(s) 128, 290
BciT130I CCWGG 1 cut(s) 94
BclI TGATCA 1 cut(s) 354
BcnI CCSGG 1 cut(s) 189
BfaI CTAG 1 cut(s) 198
BfmI CTRYAG 1 cut(s) 362
Bme1390I CCNGG 2 cut(s) 94, 189
BmiI GGNNCC 1 cut(s) 113
BmrFI CCNGG 2 cut(s) 94, 189
Bpu14I TTCGAA 1 cut(s) 168
BpuMI CCSGG 1 cut(s) 189
BsaJI CCNNGG 2 cut(s) 93, 187
BsaWI WCCGGW 1 cut(s) 204
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse118I RCCGGY 1 cut(s) 204
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 2 cut(s) 93, 187
BseGI GGATG 3 cut(s) 136, 324, 357
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMII CTCAG 1 cut(s) 242
BseRI GAGGAG 1 cut(s) 62
BshTI ACCGGT 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 2 cut(s) 189, 205
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 110
Bsp119I TTCGAA 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 1 cut(s) 354
BspCNI CTCAG 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 113
BspT104I TTCGAA 1 cut(s) 168
BsrFI RCCGGY 1 cut(s) 204
BssAI RCCGGY 1 cut(s) 204
BssECI CCNNGG 2 cut(s) 93, 187
BssMI GATC 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 2 cut(s) 9, 253
Bst6I CTCTTC 2 cut(s) 71, 80
BstBI TTCGAA 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 3 cut(s) 136, 324, 357
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 1 cut(s) 357
BstMBI GATC 1 cut(s) 354
BstNI CCWGG 1 cut(s) 94
BstSCI CCNGG 2 cut(s) 92, 187
BstSFI CTRYAG 1 cut(s) 362
BtsCI GGATG 3 cut(s) 136, 324, 357
BtsIMutI CAGTG 2 cut(s) 5, 258
CfoI GCGC 1 cut(s) 37
Cfr10I RCCGGY 1 cut(s) 204
CspAI ACCGGT 1 cut(s) 204
CviAII CATG 1 cut(s) 108
CviJI RGCY 3 cut(s) 56, 186, 201
CviKI_1 RGCY 3 cut(s) 56, 186, 201
DdeI CTNAG 1 cut(s) 228
DpnI GATC 1 cut(s) 356
DpnII GATC 1 cut(s) 354
Eam1104I CTCTTC 2 cut(s) 71, 80
EarI CTCTTC 2 cut(s) 71, 80
Eco57I CTGAAG 2 cut(s) 146, 166
EcoRII CCWGG 1 cut(s) 92
FaeI CATG 1 cut(s) 111
FaiI YATR 5 cut(s) 104, 109, 210, 340, 342
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FaqI GGGAC 1 cut(s) 110
FatI CATG 1 cut(s) 107
FbaI TGATCA 1 cut(s) 354
FokI GGATG 3 cut(s) 143, 331, 344
FspBI CTAG 1 cut(s) 198
FspI TGCGCA 1 cut(s) 36
GlaI GCGC 1 cut(s) 36
HapII CCGG 2 cut(s) 189, 205
HhaI GCGC 1 cut(s) 37
Hin1II CATG 1 cut(s) 111
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HinfI GANTC 1 cut(s) 89
HpaII CCGG 2 cut(s) 189, 205
Hpy188I TCNGA 3 cut(s) 80, 215, 231
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 2 cut(s) 9, 253
HpyCH4V TGCA 1 cut(s) 266
HpyF3I CTNAG 1 cut(s) 228
Hsp92II CATG 1 cut(s) 111
HspAI GCGC 1 cut(s) 35
Ksp22I TGATCA 1 cut(s) 354
Kzo9I GATC 1 cut(s) 354
LpnPI CCDG 7 cut(s) 79, 106, 202, 218, 256, 282, 301
MaeI CTAG 1 cut(s) 198
MalI GATC 1 cut(s) 356
MboI GATC 1 cut(s) 354
MboII GAAGA 3 cut(s) 58, 67, 172
MhlI GDGCHC 1 cut(s) 306
MluCI AATT 3 cut(s) 170, 193, 216
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 3 cut(s) 80, 83, 304
MseI TTAA 1 cut(s) 373
MspI CCGG 2 cut(s) 189, 205
MspR9I CCNGG 2 cut(s) 94, 189
MvaI CCWGG 1 cut(s) 94
NciI CCSGG 1 cut(s) 189
NdeII GATC 1 cut(s) 354
NlaIII CATG 1 cut(s) 111
NlaIV GGNNCC 1 cut(s) 113
NsbI TGCGCA 1 cut(s) 36
NspV TTCGAA 1 cut(s) 168
PfeI GAWTC 1 cut(s) 89
PflMI CCANNNNNTGG 1 cut(s) 108
PinAI ACCGGT 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 92
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 113
SaqAI TTAA 1 cut(s) 373
Sau3AI GATC 1 cut(s) 354
ScrFI CCNGG 2 cut(s) 94, 189
SduI GDGCHC 1 cut(s) 306
SetI ASST 4 cut(s) 20, 58, 203, 296
SfcI CTRYAG 1 cut(s) 362
SfuI TTCGAA 1 cut(s) 168
Sse9I AATT 3 cut(s) 170, 193, 216
SspMI CTAG 1 cut(s) 198
StyD4I CCNGG 2 cut(s) 92, 187
TaaI ACNGT 2 cut(s) 9, 253
TaqI TCGA 1 cut(s) 168
TasI AATT 3 cut(s) 170, 193, 216
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 1 cut(s) 373
Tru9I TTAA 1 cut(s) 373
TscAI CASTG 2 cut(s) 12, 258
TspDTI ATGAA 1 cut(s) 344
TspRI CASTG 2 cut(s) 12, 258
Van91I CCANNNNNTGG 1 cut(s) 108
XapI RAATTY 2 cut(s) 193, 216
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.