RchiOBHm_Chr2g0132531

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000112
Physical Location & Seq
Forward (+)
49109414 .. 49113709
4296 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50379

Sequence Viewer

Length: 603 bp
ATGGTAAAAGTCAAGGAGACAGATACATCAAAAGCTGCAAGGTTGGAAAGAATTATGAGTGCCAAAAAGTGCAAGCAGCAGTGCTTAAGAAATTGTTCTTGCACAGCATATATGAGCATGGACATTGAAGGGCGCATTGATTGCTTGACACGGTATGGTGAGTTTCTGGACATCACAGAGCACACTGCAGTGGGACGAGATCTTTATGTTCATTTAGATCATATGGAATCGGCTGAGAATGCCAGAAAATCAAAAGGCTACTTTGGAAGGAGGGTGATGCTGACTGTTCCAATATTGTCTGTTCTTCTGCCATTAGTACTGGTCATTGGCTTAAGAGGAAAACAGAAGGCCGATGAACTTGAGGAAACGAGGAGACACCCAGAATTACAGTTTTTCAATCTGAACACACTAATAGATGCCACGGAAAACTTCTCTCCAGACAATGAACTTTTTTGGCTCAGTTGGATATATGTCACCAGAATCCTATGTGAACTTCTGGAACCTCATTGCGCGTGCGCATGGAAAGCTGTTTGTGTGAAGCCTGCCGTCATTAAAACAATAGGGATCAATATCATCGATCTAAATACAATGTCTTATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

200

Amino Acids

22.97

Weight (kDa)

7.54

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 3 - 58 2.5e-12 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 517
AccII CGCG 1 cut(s) 512
AclWI GGATC 1 cut(s) 572
AfaI GTAC 1 cut(s) 318
AflII CTTAAG 2 cut(s) 85, 331
AgsI TTSAA 2 cut(s) 128, 397
AleI CACNNNNGTG 1 cut(s) 188
AluBI AGCT 2 cut(s) 35, 527
AluI AGCT 2 cut(s) 35, 527
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 2 cut(s) 11, 367
AlwI GGATC 1 cut(s) 572
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 2 cut(s) 35, 76
Asp700I GAANNNNTTC 1 cut(s) 94
AspLEI GCGC 3 cut(s) 135, 512, 518
AsuHPI GGTGA 3 cut(s) 170, 286, 466
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 2 cut(s) 22, 88
BceAI ACGGC 1 cut(s) 530
BcoDI GTCTC 2 cut(s) 11, 367
BfmI CTRYAG 1 cut(s) 186
BfrI CTTAAG 2 cut(s) 85, 331
BglII AGATCT 1 cut(s) 199
BisI GCNGC 2 cut(s) 36, 77
BlsI GCNGC 2 cut(s) 37, 78
BmcAI AGTACT 1 cut(s) 318
BmiI GGNNCC 1 cut(s) 501
BmsI GCATC 2 cut(s) 267, 406
BpmI CTGGAG 1 cut(s) 420
BpuEI CTTGAG 1 cut(s) 380
Bsa29I ATCGAT 1 cut(s) 576
BsaBI GATNNNNATC 1 cut(s) 569
BsaJI CCNNGG 1 cut(s) 420
Bse1I ACTGG 1 cut(s) 324
Bse3DI GCAATG 1 cut(s) 505
Bse8I GATNNNNATC 1 cut(s) 569
BseCI ATCGAT 1 cut(s) 576
BseDI CCNNGG 1 cut(s) 420
BseJI GATNNNNATC 1 cut(s) 569
BseMI GCAATG 1 cut(s) 505
BseMII CTCAG 2 cut(s) 225, 472
BseNI ACTGG 1 cut(s) 324
BseRI GAGGAG 1 cut(s) 385
BseXI GCAGC 2 cut(s) 22, 88
Bsh1236I CGCG 1 cut(s) 512
BshFI GGCC 1 cut(s) 350
BshVI ATCGAT 1 cut(s) 576
BsiHKAI GWGCWC 1 cut(s) 183
BslFI GGGAC 1 cut(s) 207
BsmAI GTCTC 2 cut(s) 11, 367
BsmFI GGGAC 1 cut(s) 207
BsmI GAATGC 1 cut(s) 244
BsnI GGCC 1 cut(s) 350
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 4 cut(s) 199, 217, 564, 577
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 2 cut(s) 226, 471
BspDI ATCGAT 1 cut(s) 576
BspFNI CGCG 1 cut(s) 512
BspLI GGNNCC 1 cut(s) 501
BspMAI CTGCAG 1 cut(s) 190
BspPI GGATC 1 cut(s) 572
BspTI CTTAAG 2 cut(s) 85, 331
BsrDI GCAATG 1 cut(s) 505
BsrI ACTGG 1 cut(s) 324
BssECI CCNNGG 1 cut(s) 420
BssMI GATC 4 cut(s) 199, 217, 564, 577
Bst4CI ACNGT 3 cut(s) 153, 286, 390
BstAFI CTTAAG 2 cut(s) 85, 331
BstAPI GCANNNNNTGC 1 cut(s) 141
BstC8I GCNNGC 3 cut(s) 74, 514, 543
BstDEI CTNAG 2 cut(s) 234, 458
BstDSI CCRYGG 1 cut(s) 420
BstFNI CGCG 1 cut(s) 512
BstHHI GCGC 3 cut(s) 135, 512, 518
BstKTI GATC 4 cut(s) 202, 220, 567, 580
BstMAI GTCTC 2 cut(s) 11, 367
BstMBI GATC 4 cut(s) 199, 217, 564, 577
BstMWI GCNNNNNNNGC 3 cut(s) 141, 239, 524
BstSFI CTRYAG 1 cut(s) 186
BstUI CGCG 1 cut(s) 512
BstV1I GCAGC 2 cut(s) 22, 88
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
Bsu15I ATCGAT 1 cut(s) 576
BsuRI GGCC 1 cut(s) 350
BsuTUI ATCGAT 1 cut(s) 576
BtgI CCRYGG 1 cut(s) 420
BtsI GCAGTG 3 cut(s) 86, 183, 195
BtsIMutI CAGTG 3 cut(s) 86, 183, 195
Cac8I GCNNGC 3 cut(s) 74, 514, 543
CfoI GCGC 3 cut(s) 135, 512, 518
ClaI ATCGAT 1 cut(s) 576
Csp6I GTAC 1 cut(s) 317
CviAII CATG 2 cut(s) 118, 519
CviJI RGCY 8 cut(s) 35, 233, 258, 330, 350, 457, 527, 541
CviKI_1 RGCY 8 cut(s) 35, 233, 258, 330, 350, 457, 527, 541
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 2 cut(s) 234, 458
DpnI GATC 4 cut(s) 201, 219, 566, 579
DpnII GATC 4 cut(s) 199, 217, 564, 577
FaeI CATG 2 cut(s) 121, 522
FaqI GGGAC 1 cut(s) 207
FatI CATG 2 cut(s) 117, 518
FauNDI CATATG 1 cut(s) 222
Fnu4HI GCNGC 2 cut(s) 36, 77
Fsp4HI GCNGC 2 cut(s) 36, 77
FspAI RTGCGCAY 1 cut(s) 517
FspI TGCGCA 1 cut(s) 517
GlaI GCGC 3 cut(s) 134, 511, 517
GluI GCNGC 2 cut(s) 36, 77
GsuI CTGGAG 1 cut(s) 420
HaeIII GGCC 1 cut(s) 350
HhaI GCGC 3 cut(s) 135, 512, 518
Hin1II CATG 2 cut(s) 121, 522
Hin6I GCGC 3 cut(s) 133, 510, 516
HinP1I GCGC 3 cut(s) 133, 510, 516
HinfI GANTC 2 cut(s) 227, 480
HphI GGTGA 3 cut(s) 170, 286, 466
Hpy166II GTNNAC 1 cut(s) 491
Hpy188I TCNGA 1 cut(s) 402
Hpy188III TCNNGA 3 cut(s) 167, 437, 497
Hpy8I GTNNAC 1 cut(s) 491
HpyAV CCTTC 3 cut(s) 122, 261, 340
HpyCH4III ACNGT 3 cut(s) 153, 286, 390
HpyCH4V TGCA 4 cut(s) 38, 72, 102, 188
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 239, 524
HpyF3I CTNAG 2 cut(s) 234, 458
Hsp92II CATG 2 cut(s) 121, 522
HspAI GCGC 3 cut(s) 133, 510, 516
Kzo9I GATC 4 cut(s) 199, 217, 564, 577
LpnPI CCDG 8 cut(s) 152, 256, 305, 393, 450, 482, 490, 555
Lsp1109I GCAGC 2 cut(s) 22, 88
LweI GCATC 2 cut(s) 267, 406
MaeIII GTNAC 1 cut(s) 472
MalI GATC 4 cut(s) 201, 219, 566, 579
MboI GATC 4 cut(s) 199, 217, 564, 577
MboII GAAGA 1 cut(s) 296
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 3 cut(s) 51, 91, 383
MmeI TCCRAC 2 cut(s) 24, 443
MnlI CCTC 5 cut(s) 264, 329, 355, 363, 513
MroXI GAANNNNTTC 1 cut(s) 94
MseI TTAA 3 cut(s) 86, 332, 552
MslI CAYNNNNRTG 1 cut(s) 188
MspCI CTTAAG 2 cut(s) 85, 331
Mva1269I GAATGC 1 cut(s) 244
MvnI CGCG 1 cut(s) 512
MwoI GCNNNNNNNGC 3 cut(s) 141, 239, 524
NdeI CATATG 1 cut(s) 222
NdeII GATC 4 cut(s) 199, 217, 564, 577
NlaIII CATG 2 cut(s) 121, 522
NlaIV GGNNCC 1 cut(s) 501
NmuCI GTSAC 1 cut(s) 472
NsbI TGCGCA 1 cut(s) 517
OliI CACNNNNGTG 1 cut(s) 188
PctI GAATGC 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 94
PfeI GAWTC 2 cut(s) 227, 480
PkrI GCNGC 2 cut(s) 37, 78
PspN4I GGNNCC 1 cut(s) 501
PstI CTGCAG 1 cut(s) 190
PsuI RGATCY 1 cut(s) 199
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 3 cut(s) 86, 332, 552
SatI GCNGC 2 cut(s) 36, 77
Sau3AI GATC 4 cut(s) 199, 217, 564, 577
ScaI AGTACT 1 cut(s) 318
SduI GDGCHC 1 cut(s) 183
SetI ASST 4 cut(s) 37, 44, 505, 529
SfaNI GCATC 2 cut(s) 267, 406
SfcI CTRYAG 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 3 cut(s) 85, 331, 359
SmoI CTYRAG 3 cut(s) 85, 331, 359
Sse9I AATT 3 cut(s) 51, 91, 383
SspI AATATT 1 cut(s) 294
TaaI ACNGT 3 cut(s) 153, 286, 390
TaqI TCGA 1 cut(s) 576
TasI AATT 3 cut(s) 51, 91, 383
TatI WGTACW 1 cut(s) 316
TfiI GAWTC 2 cut(s) 227, 480
Tru1I TTAA 3 cut(s) 86, 332, 552
Tru9I TTAA 3 cut(s) 86, 332, 552
TscAI CASTG 3 cut(s) 86, 190, 195
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 2 cut(s) 35, 76
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 3 cut(s) 200, 369, 459
TspGWI ACGGA 1 cut(s) 437
TspRI CASTG 3 cut(s) 86, 190, 195
Vha464I CTTAAG 2 cut(s) 85, 331
XmnI GAANNNNTTC 1 cut(s) 94
ZrmI AGTACT 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.