RchiOBHm_Chr5g0005111

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000112
Physical Location & Seq
Forward (+)
3328373 .. 3329218
846 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28634

Sequence Viewer

Length: 846 bp
ATGTCACTGTTGCGTACCAACAAAGTTGCAAATGCCCAAAAAATGTTCTTCAAAACTCTGCTTCTCTTCTTCCTCTTCCGATTTTGCGATTCCAGGGACACCATAACATGGAACCAAGAACAACTGAAGGATGATGGTGGAGTTTTAGTGTCCAAACAGAGCAAGTTAGAATTGTGTTTCTTCAGCCCCGGAAATTCTAGCAACTGGTATGTTGGAATTTGGTATTCTCAGACTAGAGTATCTAATAAAACAGTGGTGTGGGTTGCAAACAGGAACAATCCCATCAATGATACCTCTGGTGTGCTCAAAATAAACAGGTATGGAGAACTAGTCCTTTATGCTTATAACAAGGAGAGCACTCCTATTTGGTCTACTAATGTGTCGCGGTCGGTTCAAAATGTTAACATAAGCACTTTATCTGCACAGCTTTTAGATACAGGAAATCTAGTTGTGTTCCAGGATGATAATAATGAAAACTTTTTATGGCAAAGCTTTGATCATCCTATAGATACTTTAATTCCAGGTATGAAAGTTGGGGTGAATTGGAAAACTGGGAAAGAATCGGTTTTAACATCTTGGAAGTCACAAGATGACCCTGCAATTGGGGACTCTACCTTAAGGCTCTATCCAAATCAGATTGCATCCCCTGAAATTTTTATGTACAAGGGTTTGAGTAAGTATTCGCGAAGTCTAGGGCCATCGCCTAGTGTGGTCACTAATCAAGAGGAAACTTATTATCTCATGGATGACACCAATGCAATTACAAGAGCAACAGTGATTGATTCTGTGCACAAGCGCTTTACATGGGATGATGGTGGCCTTCAATGGAAGGAAGAATACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

281

Amino Acids

32.11

Weight (kDa)

6.17

Isoelectric Point (pI)

41.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 84 - 194 6.2e-37 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 345
AccB7I CCANNNNNTGG 1 cut(s) 108
AccI GTMKAC 1 cut(s) 371
AccII CGCG 2 cut(s) 385, 685
AciI CCGC 1 cut(s) 385
AcsI RAATTY 3 cut(s) 193, 216, 651
AcuI CTGAAG 2 cut(s) 146, 166
AfaI GTAC 2 cut(s) 16, 662
AfeI AGCGCT 1 cut(s) 797
AfiI CCNNNNNNNGG 2 cut(s) 108, 602
AflII CTTAAG 1 cut(s) 616
AgsI TTSAA 3 cut(s) 52, 395, 824
AhlI ACTAGT 1 cut(s) 328
AjnI CCWGG 3 cut(s) 92, 456, 520
AluBI AGCT 2 cut(s) 427, 492
AluI AGCT 2 cut(s) 427, 492
Alw21I GWGCWC 3 cut(s) 306, 359, 792
Alw44I GTGCAC 1 cut(s) 788
Aor51HI AGCGCT 1 cut(s) 797
AoxI GGCC 2 cut(s) 695, 817
ApaLI GTGCAC 1 cut(s) 788
ApoI RAATTY 3 cut(s) 193, 216, 651
AspLEI GCGC 1 cut(s) 798
AspS9I GGNCC 1 cut(s) 695
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 1 cut(s) 550
BaeGI GKGCMC 1 cut(s) 792
BaeI ACNNNNGTAYC 2 cut(s) 222, 255
BarI GAAGNNNNNNTAC 1 cut(s) 821
Bbv12I GWGCWC 3 cut(s) 306, 359, 792
BccI CCATC 4 cut(s) 128, 290, 706, 806
BciT130I CCWGG 3 cut(s) 94, 458, 522
BclI TGATCA 1 cut(s) 496
BcnI CCSGG 1 cut(s) 189
BcuI ACTAGT 1 cut(s) 328
BfaI CTAG 6 cut(s) 198, 234, 329, 446, 692, 705
BfmI CTRYAG 1 cut(s) 504
BfoI RGCGCY 1 cut(s) 799
BfrI CTTAAG 1 cut(s) 616
Bme1390I CCNGG 4 cut(s) 94, 189, 458, 522
BmgT120I GGNCC 1 cut(s) 695
BmiI GGNNCC 1 cut(s) 113
BmrFI CCNGG 4 cut(s) 94, 189, 458, 522
BmrI ACTGGG 1 cut(s) 561
BmsI GCATC 1 cut(s) 650
BmuI ACTGGG 1 cut(s) 561
BpuMI CCSGG 1 cut(s) 189
BsaJI CCNNGG 2 cut(s) 93, 187
BsaXI ACNNNNNCTCC 4 cut(s) 132, 162, 315, 345
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 602
Bse1I ACTGG 2 cut(s) 209, 556
BseBI CCWGG 3 cut(s) 94, 458, 522
BseDI CCNNGG 2 cut(s) 93, 187
BseGI GGATG 6 cut(s) 136, 466, 499, 641, 751, 814
BseLI CCNNNNNNNGG 2 cut(s) 108, 602
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 2 cut(s) 209, 556
BseSI GKGCMC 1 cut(s) 792
BsgI GTGCAG 1 cut(s) 405
Bsh1236I CGCG 2 cut(s) 385, 685
Bsh1285I CGRYCG 1 cut(s) 389
BshFI GGCC 2 cut(s) 697, 819
BsiEI CGRYCG 1 cut(s) 389
BsiHKAI GWGCWC 3 cut(s) 306, 359, 792
BsiSI CCGG 1 cut(s) 189
BslFI GGGAC 2 cut(s) 110, 620
BslI CCNNNNNNNGG 2 cut(s) 108, 602
BsmFI GGGAC 2 cut(s) 110, 620
BsnI GGCC 2 cut(s) 697, 819
Bsp1286I GDGCHC 3 cut(s) 306, 359, 792
Bsp1407I TGTACA 1 cut(s) 660
Bsp143I GATC 1 cut(s) 496
Bsp68I TCGCGA 1 cut(s) 685
BspACI CCGC 1 cut(s) 385
BspANI GGCC 2 cut(s) 697, 819
BspCNI CTCAG 1 cut(s) 241
BspFNI CGCG 2 cut(s) 385, 685
BspLI GGNNCC 1 cut(s) 113
BspTI CTTAAG 1 cut(s) 616
BsrGI TGTACA 1 cut(s) 660
BsrI ACTGG 2 cut(s) 209, 556
BssECI CCNNGG 2 cut(s) 93, 187
BssMI GATC 1 cut(s) 496
Bst2UI CCWGG 3 cut(s) 94, 458, 522
Bst4CI ACNGT 3 cut(s) 9, 253, 775
Bst6I CTCTTC 2 cut(s) 71, 80
BstAFI CTTAAG 1 cut(s) 616
BstAUI TGTACA 1 cut(s) 660
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 6 cut(s) 136, 466, 499, 641, 751, 814
BstFNI CGCG 2 cut(s) 385, 685
BstH2I RGCGCY 1 cut(s) 799
BstHHI GCGC 1 cut(s) 798
BstKTI GATC 1 cut(s) 499
BstMBI GATC 1 cut(s) 496
BstMCI CGRYCG 1 cut(s) 389
BstNI CCWGG 3 cut(s) 94, 458, 522
BstSCI CCNGG 4 cut(s) 92, 187, 456, 520
BstSFI CTRYAG 1 cut(s) 504
BstSLI GKGCMC 1 cut(s) 792
BstUI CGCG 2 cut(s) 385, 685
BsuRI GGCC 2 cut(s) 697, 819
BtgZI GCGATG 1 cut(s) 684
BtsCI GGATG 6 cut(s) 136, 466, 499, 641, 751, 814
BtsIMutI CAGTG 3 cut(s) 5, 258, 780
BtuMI TCGCGA 1 cut(s) 685
CfoI GCGC 1 cut(s) 798
Cfr13I GGNCC 1 cut(s) 695
Csp6I GTAC 2 cut(s) 15, 661
CviAII CATG 3 cut(s) 108, 742, 804
CviJI RGCY 6 cut(s) 186, 427, 492, 622, 697, 819
CviKI_1 RGCY 6 cut(s) 186, 427, 492, 622, 697, 819
CviQI GTAC 2 cut(s) 15, 661
DdeI CTNAG 1 cut(s) 228
DpnI GATC 1 cut(s) 498
DpnII GATC 1 cut(s) 496
Eam1104I CTCTTC 2 cut(s) 71, 80
EarI CTCTTC 2 cut(s) 71, 80
Eco47III AGCGCT 1 cut(s) 797
Eco57I CTGAAG 2 cut(s) 146, 166
EcoRII CCWGG 3 cut(s) 92, 456, 520
FaeI CATG 3 cut(s) 111, 745, 807
FaqI GGGAC 2 cut(s) 110, 620
FatI CATG 3 cut(s) 107, 741, 803
FbaI TGATCA 1 cut(s) 496
FblI GTMKAC 1 cut(s) 371
FokI GGATG 6 cut(s) 143, 473, 486, 628, 758, 821
FspBI CTAG 6 cut(s) 198, 234, 329, 446, 692, 705
GlaI GCGC 1 cut(s) 797
HaeII RGCGCY 1 cut(s) 799
HaeIII GGCC 2 cut(s) 697, 819
HapII CCGG 1 cut(s) 189
HhaI GCGC 1 cut(s) 798
Hin1II CATG 3 cut(s) 111, 745, 807
Hin6I GCGC 1 cut(s) 796
HinP1I GCGC 1 cut(s) 796
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HindIII AAGCTT 1 cut(s) 490
HinfI GANTC 4 cut(s) 89, 560, 608, 782
HpaI GTTAAC 1 cut(s) 403
HpaII CCGG 1 cut(s) 189
HphI GGTGA 1 cut(s) 550
Hpy166II GTNNAC 3 cut(s) 372, 403, 790
Hpy188I TCNGA 3 cut(s) 80, 231, 636
Hpy188III TCNNGA 2 cut(s) 684, 722
Hpy8I GTNNAC 3 cut(s) 372, 403, 790
HpyAV CCTTC 3 cut(s) 121, 823, 830
HpyCH4III ACNGT 3 cut(s) 9, 253, 775
HpyCH4V TGCA 7 cut(s) 29, 266, 422, 599, 641, 758, 790
HpyF3I CTNAG 1 cut(s) 228
Hsp92II CATG 3 cut(s) 111, 745, 807
HspAI GCGC 1 cut(s) 796
Ksp22I TGATCA 1 cut(s) 496
KspAI GTTAAC 1 cut(s) 403
Kzo9I GATC 1 cut(s) 496
LweI GCATC 1 cut(s) 650
MaeI CTAG 6 cut(s) 198, 234, 329, 446, 692, 705
MaeIII GTNAC 3 cut(s) 3, 582, 712
MalI GATC 1 cut(s) 498
MboI GATC 1 cut(s) 496
MboII GAAGA 6 cut(s) 40, 58, 61, 67, 172, 845
MfeI CAATTG 1 cut(s) 600
MhlI GDGCHC 3 cut(s) 306, 359, 792
MluCI AATT 8 cut(s) 170, 193, 216, 516, 541, 600, 651, 759
MlyI GAGTC 1 cut(s) 602
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 3 cut(s) 83, 304, 718
MseI TTAA 5 cut(s) 402, 515, 569, 617, 844
MspCI CTTAAG 1 cut(s) 616
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 4 cut(s) 94, 189, 458, 522
MunI CAATTG 1 cut(s) 600
MvaI CCWGG 3 cut(s) 94, 458, 522
MvnI CGCG 2 cut(s) 385, 685
NciI CCSGG 1 cut(s) 189
NdeII GATC 1 cut(s) 496
NlaIII CATG 3 cut(s) 111, 745, 807
NlaIV GGNNCC 1 cut(s) 113
NmuCI GTSAC 3 cut(s) 3, 582, 712
NruI TCGCGA 1 cut(s) 685
PfeI GAWTC 3 cut(s) 89, 560, 782
PflMI CCANNNNNTGG 1 cut(s) 108
PfoI TCCNGGA 1 cut(s) 456
PleI GAGTC 1 cut(s) 602
PpsI GAGTC 1 cut(s) 602
PsiI TTATAA 1 cut(s) 345
Psp6I CCWGG 3 cut(s) 92, 456, 520
PspGI CCWGG 3 cut(s) 92, 456, 520
PspN4I GGNNCC 1 cut(s) 113
PspPI GGNCC 1 cut(s) 695
RruI TCGCGA 1 cut(s) 685
RsaI GTAC 2 cut(s) 16, 662
RsaNI GTAC 2 cut(s) 15, 661
SaqAI TTAA 5 cut(s) 402, 515, 569, 617, 844
Sau3AI GATC 1 cut(s) 496
Sau96I GGNCC 1 cut(s) 695
SchI GAGTC 1 cut(s) 602
ScrFI CCNGG 4 cut(s) 94, 189, 458, 522
SduI GDGCHC 3 cut(s) 306, 359, 792
SetI ASST 6 cut(s) 296, 320, 429, 494, 526, 617
SfaNI GCATC 1 cut(s) 650
SfcI CTRYAG 1 cut(s) 504
SmlI CTYRAG 1 cut(s) 616
SmoI CTYRAG 1 cut(s) 616
SpeI ACTAGT 1 cut(s) 328
Sse9I AATT 8 cut(s) 170, 193, 216, 516, 541, 600, 651, 759
SsiI CCGC 1 cut(s) 385
SspMI CTAG 6 cut(s) 198, 234, 329, 446, 692, 705
StyD4I CCNGG 4 cut(s) 92, 187, 456, 520
TaaI ACNGT 3 cut(s) 9, 253, 775
TasI AATT 8 cut(s) 170, 193, 216, 516, 541, 600, 651, 759
TatI WGTACW 1 cut(s) 660
TfiI GAWTC 3 cut(s) 89, 560, 782
Tru1I TTAA 5 cut(s) 402, 515, 569, 617, 844
Tru9I TTAA 5 cut(s) 402, 515, 569, 617, 844
TscAI CASTG 3 cut(s) 12, 258, 780
TseFI GTSAC 3 cut(s) 3, 582, 712
Tsp45I GTSAC 3 cut(s) 3, 582, 712
TspDTI ATGAA 2 cut(s) 486, 542
TspRI CASTG 3 cut(s) 12, 258, 780
Van91I CCANNNNNTGG 1 cut(s) 108
Vha464I CTTAAG 1 cut(s) 616
VneI GTGCAC 1 cut(s) 788
XapI RAATTY 3 cut(s) 193, 216, 651
XmiI GTMKAC 1 cut(s) 371
XspI CTAG 6 cut(s) 198, 234, 329, 446, 692, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.