Rorug04G0400500

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000112
Physical Location & Seq
Reverse (-)
56561456 .. 56564382
2927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0400500.1

Sequence Viewer

Length: 774 bp
ATGGGATTTGAGGTTTCTGATGAGTTATTGGGAACTTTCGTCCCAGTTTTGATATATTGGGCATATTCAGGGATTTATGTGCTTCTGGGTTCGTTTGACAAGTATCGACTACACACCAGGAAAGATGAGGATGAGAAGAATTTGGTGTCCAAGAGAACCGTGGTTAAAGGCGTTCTTCTTCAGCAGACCATTCAGGCCATTGTTGCTATCATTTTGTTCAAGGTGACAGGAGATGATGGTGCAGCTGCAAGTGTAAAGCCTTCATACATAGATCTAGCGAGACAGTTAGTTACTGCAATGTTGGTTTTGGATACCTGGCAATACTTTATGCACAGATACATGCATCACAACAAGTTCTTGTACAAGCATATTCATTCTCAACATCACCGGCTTGTTGTGCCCTATGCATTTGGAGCCTTATACAATCACCCTGTAGAGGGTCTTCTCCTTGATACAATTGGTGGGGCCTTATCATTTCTCCTCTCTGGTATGTCTCCTCGAGCCTCCATATTCTTCTTCTCCTTTGCCACCATCAAAACAGTAGACGATCATTGTGGATTATGGCTTCCCGGGAACCTCTTCCATGTACTTTTCAGAAACAATACTGCTTACCATGATGTCCACCATCAGCTCTATGGAAGCAAGTATAACTTCTCCCAGCCGTTCTTTGTCATGTGGGATAGAATACTTGGTACCTATATGCCGTACTCATTGGAGAAGAGAACAGGTGGGGGCTTTGAAGTACGACCTGCAAAAGAAGGGAAGGAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

257

Amino Acids

29.44

Weight (kDa)

8.78

Isoelectric Point (pI)

36.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_hydroxylase PF04116 97 - 232 2.5e-25 Fatty acid hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 757
Acc65I GGTACC 1 cut(s) 692
AccB1I GGYRCC 1 cut(s) 692
AccI GTMKAC 1 cut(s) 543
AcsI RAATTY 1 cut(s) 139
AcuI CTGAAG 1 cut(s) 164
AfaI GTAC 5 cut(s) 362, 588, 694, 707, 744
AfiI CCNNNNNNNGG 2 cut(s) 436, 437
AgsI TTSAA 2 cut(s) 220, 740
AjnI CCWGG 2 cut(s) 116, 314
AluBI AGCT 2 cut(s) 245, 631
AluI AGCT 2 cut(s) 245, 631
Alw26I GTCTC 2 cut(s) 274, 498
Ama87I CYCGRG 2 cut(s) 498, 569
AoxI GGCC 2 cut(s) 195, 465
ApeKI GCWGC 2 cut(s) 242, 245
ApoI RAATTY 1 cut(s) 139
Asp700I GAANNNNTTC 1 cut(s) 578
Asp718I GGTACC 1 cut(s) 692
AspS9I GGNCC 1 cut(s) 465
AsuC2I CCSGG 2 cut(s) 570, 571
AsuHPI GGTGA 3 cut(s) 235, 377, 419
AvaI CYCGRG 2 cut(s) 498, 569
BaeGI GKGCMC 1 cut(s) 402
BanI GGYRCC 1 cut(s) 692
BarI GAAGNNNNNNTAC 2 cut(s) 426, 458
BbsI GAAGAC 1 cut(s) 434
BbvI GCAGC 2 cut(s) 232, 254
BccI CCATC 3 cut(s) 230, 539, 633
BceAI ACGGC 2 cut(s) 646, 688
BciT130I CCWGG 2 cut(s) 118, 316
BciVI GTATCC 1 cut(s) 304
BcnI CCSGG 2 cut(s) 570, 571
BcoDI GTCTC 2 cut(s) 274, 498
BfaI CTAG 1 cut(s) 275
BfmI CTRYAG 1 cut(s) 432
BfuAI ACCTGC 1 cut(s) 757
BfuI GTATCC 1 cut(s) 304
BglII AGATCT 1 cut(s) 271
BisI GCNGC 2 cut(s) 243, 246
BlsI GCNGC 2 cut(s) 244, 247
Bme1390I CCNGG 4 cut(s) 118, 316, 570, 571
BmeT110I CYCGRG 2 cut(s) 498, 569
BmgT120I GGNCC 1 cut(s) 465
BmiI GGNNCC 4 cut(s) 415, 466, 575, 694
BmrFI CCNGG 4 cut(s) 118, 316, 570, 571
BmrI ACTGGG 1 cut(s) 38
BmsI GCATC 1 cut(s) 352
BmuI ACTGGG 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 434
BpuMI CCSGG 2 cut(s) 570, 571
BsaJI CCNNGG 2 cut(s) 159, 569
Bsc4I CCNNNNNNNGG 2 cut(s) 436, 437
Bse118I RCCGGY 1 cut(s) 387
Bse1I ACTGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 303
BseBI CCWGG 2 cut(s) 118, 316
BseDI CCNNGG 2 cut(s) 159, 569
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 2 cut(s) 436, 437
BseMI GCAATG 1 cut(s) 303
BseNI ACTGG 1 cut(s) 44
BseRI GAGGAG 2 cut(s) 470, 486
BseSI GKGCMC 1 cut(s) 402
BseXI GCAGC 2 cut(s) 232, 254
BseYI CCCAGC 1 cut(s) 657
BsgI GTGCAG 1 cut(s) 261
BshFI GGCC 2 cut(s) 197, 467
BshNI GGYRCC 1 cut(s) 692
BsiHKCI CYCGRG 2 cut(s) 498, 569
BsiSI CCGG 2 cut(s) 388, 570
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 2 cut(s) 436, 437
BsmAI GTCTC 2 cut(s) 274, 498
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 2 cut(s) 197, 467
BsoBI CYCGRG 2 cut(s) 498, 569
Bsp1286I GDGCHC 1 cut(s) 402
Bsp1407I TGTACA 1 cut(s) 360
Bsp143I GATC 2 cut(s) 271, 547
BspANI GGCC 2 cut(s) 197, 467
BspLI GGNNCC 4 cut(s) 415, 466, 575, 694
BspMI ACCTGC 1 cut(s) 757
BspT107I GGYRCC 1 cut(s) 692
BsrDI GCAATG 1 cut(s) 303
BsrFI RCCGGY 1 cut(s) 387
BsrGI TGTACA 1 cut(s) 360
BsrI ACTGG 1 cut(s) 44
BssAI RCCGGY 1 cut(s) 387
BssECI CCNNGG 2 cut(s) 159, 569
BssMI GATC 2 cut(s) 271, 547
Bst2UI CCWGG 2 cut(s) 118, 316
Bst4CI ACNGT 3 cut(s) 160, 285, 541
Bst6I CTCTTC 2 cut(s) 584, 713
BstAUI TGTACA 1 cut(s) 360
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 2 cut(s) 274, 550
BstMAI GTCTC 2 cut(s) 274, 498
BstMBI GATC 2 cut(s) 271, 547
BstMWI GCNNNNNNNGC 3 cut(s) 203, 397, 413
BstNI CCWGG 2 cut(s) 118, 316
BstNSI RCATGY 1 cut(s) 343
BstSCI CCNGG 4 cut(s) 116, 314, 568, 569
BstSFI CTRYAG 1 cut(s) 432
BstSLI GKGCMC 1 cut(s) 402
BstV1I GCAGC 2 cut(s) 232, 254
BstV2I GAAGAC 1 cut(s) 434
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuI GTATCC 1 cut(s) 304
BsuRI GGCC 2 cut(s) 197, 467
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 136
BveI ACCTGC 1 cut(s) 757
Cfr10I RCCGGY 1 cut(s) 387
Cfr13I GGNCC 1 cut(s) 465
Cfr9I CCCGGG 1 cut(s) 569
Csp6I GTAC 5 cut(s) 361, 587, 693, 706, 743
CviAII CATG 4 cut(s) 340, 584, 614, 673
CviQI GTAC 5 cut(s) 361, 587, 693, 706, 743
DpnI GATC 2 cut(s) 273, 549
DpnII GATC 2 cut(s) 271, 547
Eam1104I CTCTTC 2 cut(s) 584, 713
EarI CTCTTC 2 cut(s) 584, 713
Eco57I CTGAAG 1 cut(s) 164
Eco88I CYCGRG 2 cut(s) 498, 569
EcoO109I RGGNCCY 1 cut(s) 465
EcoRII CCWGG 2 cut(s) 116, 314
EcoT22I ATGCAT 2 cut(s) 345, 409
FaeI CATG 4 cut(s) 343, 587, 617, 676
FalI AAGNNNNNCTT 4 cut(s) 159, 191, 635, 667
FaqI GGGAC 1 cut(s) 26
FatI CATG 4 cut(s) 339, 583, 613, 672
FblI GTMKAC 1 cut(s) 543
Fnu4HI GCNGC 2 cut(s) 243, 246
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 2 cut(s) 243, 246
FspBI CTAG 1 cut(s) 275
GluI GCNGC 2 cut(s) 243, 246
GsaI CCCAGC 1 cut(s) 661
HaeIII GGCC 2 cut(s) 197, 467
HapII CCGG 2 cut(s) 388, 570
Hin1II CATG 4 cut(s) 343, 587, 617, 676
HpaII CCGG 2 cut(s) 388, 570
HphI GGTGA 3 cut(s) 235, 377, 419
Hpy166II GTNNAC 2 cut(s) 544, 622
Hpy188I TCNGA 2 cut(s) 19, 596
Hpy8I GTNNAC 2 cut(s) 544, 622
HpyAV CCTTC 3 cut(s) 270, 752, 757
HpyCH4III ACNGT 3 cut(s) 160, 285, 541
HpyCH4V TGCA 7 cut(s) 242, 248, 296, 331, 343, 407, 752
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 397, 413
Hsp92II CATG 4 cut(s) 343, 587, 617, 676
KpnI GGTACC 1 cut(s) 696
Kzo9I GATC 2 cut(s) 271, 547
LmnI GCTCC 1 cut(s) 413
Lsp1109I GCAGC 2 cut(s) 232, 254
LweI GCATC 1 cut(s) 352
MaeI CTAG 1 cut(s) 275
MaeIII GTNAC 2 cut(s) 223, 289
MalI GATC 2 cut(s) 273, 549
MboI GATC 2 cut(s) 271, 547
MboII GAAGA 8 cut(s) 148, 167, 170, 434, 505, 508, 571, 730
MfeI CAATTG 1 cut(s) 456
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 1 cut(s) 402
MluCI AATT 2 cut(s) 139, 456
MnlI CCTC 7 cut(s) 4, 121, 430, 491, 507, 514, 587
Mph1103I ATGCAT 2 cut(s) 345, 409
MroXI GAANNNNTTC 1 cut(s) 578
MseI TTAA 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 2 cut(s) 388, 570
MspR9I CCNGG 4 cut(s) 118, 316, 570, 571
MunI CAATTG 1 cut(s) 456
MvaI CCWGG 2 cut(s) 118, 316
MwoI GCNNNNNNNGC 3 cut(s) 203, 397, 413
NciI CCSGG 2 cut(s) 570, 571
NdeII GATC 2 cut(s) 271, 547
NlaIII CATG 4 cut(s) 343, 587, 617, 676
NlaIV GGNNCC 4 cut(s) 415, 466, 575, 694
NmuCI GTSAC 1 cut(s) 223
NsiI ATGCAT 2 cut(s) 345, 409
NspI RCATGY 1 cut(s) 343
PaeR7I CTCGAG 1 cut(s) 498
PdmI GAANNNNTTC 1 cut(s) 578
PkrI GCNGC 2 cut(s) 244, 247
Psp6I CCWGG 2 cut(s) 116, 314
PspFI CCCAGC 1 cut(s) 657
PspGI CCWGG 2 cut(s) 116, 314
PspN4I GGNNCC 4 cut(s) 415, 466, 575, 694
PspPI GGNCC 1 cut(s) 465
PspXI VCTCGAGB 1 cut(s) 498
PsuI RGATCY 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 245
RsaI GTAC 5 cut(s) 362, 588, 694, 707, 744
RsaNI GTAC 5 cut(s) 361, 587, 693, 706, 743
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 2 cut(s) 243, 246
Sau3AI GATC 2 cut(s) 271, 547
Sau96I GGNCC 1 cut(s) 465
ScrFI CCNGG 4 cut(s) 118, 316, 570, 571
SduI GDGCHC 1 cut(s) 402
SetI ASST 9 cut(s) 15, 225, 247, 317, 579, 633, 698, 730, 751
SfaNI GCATC 1 cut(s) 352
SfcI CTRYAG 1 cut(s) 432
Sfr274I CTCGAG 1 cut(s) 498
SlaI CTCGAG 1 cut(s) 498
SmaI CCCGGG 1 cut(s) 571
SmlI CTYRAG 1 cut(s) 498
SmoI CTYRAG 1 cut(s) 498
Sse9I AATT 2 cut(s) 139, 456
SspMI CTAG 1 cut(s) 275
StyD4I CCNGG 4 cut(s) 116, 314, 568, 569
TaaI ACNGT 3 cut(s) 160, 285, 541
TaqI TCGA 2 cut(s) 106, 499
TasI AATT 2 cut(s) 139, 456
TatI WGTACW 2 cut(s) 360, 586
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 2 cut(s) 242, 245
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 2 cut(s) 252, 362
TspMI CCCGGG 1 cut(s) 569
XapI RAATTY 1 cut(s) 139
XceI RCATGY 1 cut(s) 343
XcmI CCANNNNNNNNNTGG 2 cut(s) 157, 632
XhoI CTCGAG 1 cut(s) 498
XmaI CCCGGG 1 cut(s) 569
XmiI GTMKAC 1 cut(s) 543
XmnI GAANNNNTTC 1 cut(s) 578
XspI CTAG 1 cut(s) 275
Zsp2I ATGCAT 2 cut(s) 345, 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.