Rh5CG047700

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000112
Physical Location & Seq
Forward (+)
3352880 .. 3353716
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG047700.1

Sequence Viewer

Length: 435 bp
ATGTTCGAGTATGATTTACCAGGGTATGAACTGAAGTCTTTAAATGATTGGAATCAGATAAATGGGTCAGATGGATGTGTCAGTAAGCAAGTTGAAGTGTCAAAGTGTGGGAATGGAGAAGGGTTTGTGCAGATGGTAAAAGTCAAGGAGCCAGACACATCCAAATATGCAAGAGAATCTGTGAAAATGACTGGACTGGTTGTTTGTCCAGCTGAGAATGCCAGAAAATCAAAAGGCTTCTTTGGAAGGAGGGTGATGCTGACTGTTCCAATATTGTCTGTTCTTCTGCCGTTGGTGCTGGTCATTGGCTTAAGAGGAAAACAGAAGATTGTGAAGTTTGTAAATCACATGAAATCACTCAACTTGAACAGGATACATATTGAAGTATTTGCATTTTCAATGCCATTGCCAGTTATAACATTGAGCAGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

144

Amino Acids

16.06

Weight (kDa)

9.57

Isoelectric Point (pI)

36.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 416
AcuI CTGAAG 1 cut(s) 53
AflII CTTAAG 1 cut(s) 310
AgsI TTSAA 4 cut(s) 95, 367, 383, 399
AjnI CCWGG 1 cut(s) 19
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
ApeKI GCWGC 1 cut(s) 426
ArsI GACNNNNNNTTYG 2 cut(s) 186, 218
AsuHPI GGTGA 1 cut(s) 265
BccI CCATC 2 cut(s) 65, 127
BceAI ACGGC 1 cut(s) 274
BciT130I CCWGG 1 cut(s) 21
BciVI GTATCC 1 cut(s) 366
BfrI CTTAAG 1 cut(s) 310
BfuI GTATCC 1 cut(s) 366
BisI GCNGC 1 cut(s) 427
BlsI GCNGC 1 cut(s) 428
Bme1390I CCNGG 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 21
BmsI GCATC 1 cut(s) 246
BsaBI GATNNNNATC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 20
Bse1I ACTGG 3 cut(s) 196, 201, 410
Bse3DI GCAATG 1 cut(s) 404
Bse8I GATNNNNATC 1 cut(s) 51
BseBI CCWGG 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 2 cut(s) 80, 158
BseJI GATNNNNATC 1 cut(s) 51
BseMI GCAATG 1 cut(s) 404
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 3 cut(s) 196, 201, 410
BsgI GTGCAG 1 cut(s) 149
BsmI GAATGC 1 cut(s) 223
BspCNI CTCAG 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 150
BspTI CTTAAG 1 cut(s) 310
BsrDI GCAATG 1 cut(s) 404
BsrI ACTGG 3 cut(s) 196, 201, 410
BssECI CCNNGG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 265
BstAFI CTTAAG 1 cut(s) 310
BstDEI CTNAG 1 cut(s) 213
BstF5I GGATG 2 cut(s) 80, 158
BstMWI GCNNNNNNNGC 2 cut(s) 218, 295
BstNI CCWGG 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 19
BsuI GTATCC 1 cut(s) 366
BtsCI GGATG 2 cut(s) 80, 158
CviAII CATG 1 cut(s) 349
CviJI RGCY 4 cut(s) 151, 212, 237, 309
CviKI_1 RGCY 4 cut(s) 151, 212, 237, 309
DdeI CTNAG 1 cut(s) 213
DraI TTTAAA 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 19
FaeI CATG 1 cut(s) 352
FaiI YATR 6 cut(s) 12, 27, 168, 350, 378, 416
FatI CATG 1 cut(s) 348
Fnu4HI GCNGC 1 cut(s) 427
FokI GGATG 2 cut(s) 87, 145
Fsp4HI GCNGC 1 cut(s) 427
GluI GCNGC 1 cut(s) 427
Hin1II CATG 1 cut(s) 352
HinfI GANTC 2 cut(s) 52, 176
HphI GGTGA 1 cut(s) 265
Hpy188I TCNGA 2 cut(s) 57, 70
HpyAV CCTTC 2 cut(s) 113, 240
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 3 cut(s) 130, 170, 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 295
HpyF3I CTNAG 1 cut(s) 213
Hsp92II CATG 1 cut(s) 352
LmnI GCTCC 1 cut(s) 148
LweI GCATC 1 cut(s) 246
MboII GAAGA 2 cut(s) 275, 337
MnlI CCTC 2 cut(s) 243, 308
MseI TTAA 2 cut(s) 41, 311
MspA1I CMGCKG 1 cut(s) 212
MspCI CTTAAG 1 cut(s) 310
MspR9I CCNGG 1 cut(s) 21
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 1 cut(s) 21
MwoI GCNNNNNNNGC 2 cut(s) 218, 295
NlaIII CATG 1 cut(s) 352
NlaIV GGNNCC 1 cut(s) 150
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 52, 176
PkrI GCNGC 1 cut(s) 428
PsiI TTATAA 1 cut(s) 416
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 150
PvuII CAGCTG 1 cut(s) 212
SaqAI TTAA 2 cut(s) 41, 311
SatI GCNGC 1 cut(s) 427
ScrFI CCNGG 1 cut(s) 21
SetI ASST 1 cut(s) 214
SfaNI GCATC 1 cut(s) 246
SmlI CTYRAG 1 cut(s) 310
SmoI CTYRAG 1 cut(s) 310
SspI AATATT 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 19
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 1 cut(s) 6
TfiI GAWTC 2 cut(s) 52, 176
Tru1I TTAA 2 cut(s) 41, 311
Tru9I TTAA 2 cut(s) 41, 311
TseI GCWGC 1 cut(s) 426
TspDTI ATGAA 2 cut(s) 42, 365
Vha464I CTTAAG 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.