Rorug03G0009100

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000112
Physical Location & Seq
Reverse (-)
674281 .. 678701
4421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0009100.1

Sequence Viewer

Length: 2148 bp
ATGGCGGACGTGATGTTGATGAACGATATAGAGGCGACGGCGGCTAGTCTCGGAATTGACCTCTCGCACTTAGACCTAGGCTCAATCCGTCTGCCTCACGGCGAAACCTTCGGCATTCCAAGTGACGATGAAGATGTCGGTCACGATGTGAATTCGGAGATGGAGTCCGGGTTCGGGAACATCATCGTTGTCGATAACCTGCCGGCGGTGCCGATTGAGAAGTTCGAGAAACTTGAAAACGTGATTCGGAAAATTTACAGTCAGCTTGGTGTGATCAAGGAAGATGGATTCTGGATGCCTCTCGAACCCGAAACCCAGAAGACCATGGGCTATTGCTTCATCGAGTTCAATACTCCTCAGGAAGCTGAGCTTGCCAGGGAGAAGACTCATGGATACAAGCTGGACAGATCACACATTTTCGCTGTCAGCATGTTTGATGACTTTGATCGTTTCATGAAAGTTCCTGATCAGTGGGCTCCGCCCGAAACTAAGCCATATACTCCAGGGGAAAATCTTCAAAATTGGCTCACTGATTTAAAAGGCCGGGATCAATTTGTCATCCGTGCTGGTAATGATACTGAAGTTTATTGGAATGATGCACGACAATTGAAGGCTGATTTTGTTTACAAGCGTCAATACTGGACTGAAAGCTTTGTGCAATGGTCGCCCCTGGGGACATATTTGGCCACTGTACACAGACAGGGTGCTGCAGTTTGGGGAGGTGCCACCAGCGAGTTCAAACGATTGATGCGTTATGCTCATCCACAGGTTAGACTGATTGATTTTTCCCCTGGTGAGAAATATTTGGTGACCTACAGCAGCCATGAAGCAAGCAATCCCCGCGACACAAATAGGGTTGTCATAGACATTTTTGATGTGAGAACTGGAAAAGTTATGAGAGATTTTAAGGGAACTCCTGATGATTTTGCAATTGGAGGAACTGGAGGTGTTTCGGGCGTGTCTTGGCCTGTGTTCAAATGGGGTGGTGGAAAAGATGACAAGTACTTTGCCAGAATGGGAAAGAGTGCTATATCTGTTTATGAGACAGAAACGTTTTCACTTGTGGACAAAAAATCTATCAAAGTTGAGAATGTTATGGACTTCAGTTGGTCACCAACTGATTCAATTCTTGCTCTTTTTGTTCCTGAATTGGGCGGTGGGAACCAACCTGCTAGGGTGAGTCTTATTCAAATCCCCAGTAAAGAGGAGTTAAGGCAGAAGAATCTTTTCAGTGTTAGTGATTGCAAGATGTACTGGCAAAGCAATGGGGAGTATCTTGCTGTTAAAGTTGATCGTTATACGAAAACGAAAAAAAGTACATATACTGGATTTGAACTTTTCCGAATCAAGGAGCGAGATATCCCTATTGAAGTTTTAGAGCTTGAGAATAAGAATGACAAGATCATTGCATTTGCTTGGGAGCCTAAGGGACATAGATTTGCAATTATTCATGGTGACACTCCAAGGCCTGATATAAGCTTCTACTCAATGCGTACTGCTCACAATACAGGCCGTGTGTCAAAGCTTATTACTCTTAAAGGCAAGCAGGCGAATGCTCTTTCTTGGTCACCTTCAGGGCGCTTTATAATTCTTGCAGGATTGAAGGGTTTGAACGGGCAGTTGGAATTTTACAATGTGGATGAGCAAGAAACGATGGCGACAACTGAGCATTTTATGGCGACAGATATTGAATGGGATCCTACTGGAAGATATGTTGCTACTGCAGTTACTTCAGTTCATGAGATGGAGAATGGTTATATTATATGGACCTTCAATGGCAAGCTACTTTATCGGGTATTAAAGGATCATTTCTTCCAGTTTTTGTGGCGTCCAAGGCCAGCATCTTTCCTGACTCCTGAGCAAGAGGAGGAGATTGCAAAGAACTTGAAAAAGTATAGCAAAAGATATGAGCTCGAGGATAATGATGTGGAAAAGCAATTGAGCGAGCAGGAGCGTGCAAAGAGGAGAGAGTTGAAGGAAGAATGGGAGAAGTGGGTCGCTGAGTGGAAGCGGTTGTACGAAGAAGAAAAAATGGATAGGCAGAGGCTCAGGGATGGAGAAGCCAGTGATGAAGAGGAGGAGTACGAAGCTAGAGAGGTTGAAGTAGAGGAAGTGGTGAGTACTCAAGAGGAGGTTCTTTCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

715

Amino Acids

82.49

Weight (kDa)

5.15

Isoelectric Point (pI)

32.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 79 - 136 5e-06 RNA recognition motif
eIF2A PF08662 407 - 607 2.3e-62 Eukaryotic translation initiation factor eIF2A
Beta-prop_THOC3 PF25174 465 - 591 1.1e-06 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1586
Acc36I ACCTGC 2 cut(s) 207, 1177
AccB1I GGYRCC 2 cut(s) 208, 722
AccII CGCG 1 cut(s) 843
AciI CCGC 7 cut(s) 5, 41, 206, 479, 841, 1155, 2011
AclI AACGTT 1 cut(s) 1052
AclWI GGATC 4 cut(s) 555, 1691, 1704, 1812
AcoI YGGCCR 1 cut(s) 684
AcsI RAATTY 3 cut(s) 151, 252, 1625
AcuI CTGAAG 4 cut(s) 600, 1087, 1557, 1716
AcyI GRCGYC 1 cut(s) 1828
AdeI CACNNNGTG 1 cut(s) 148
AfaI GTAC 8 cut(s) 693, 1004, 1253, 1318, 1495, 2018, 2084, 2122
AfiI CCNNNNNNNGG 4 cut(s) 174, 205, 1151, 1348
AjiI CACGTC 1 cut(s) 10
AjnI CCWGG 4 cut(s) 374, 502, 669, 790
AjuI GAANNNNNNNTTGG 2 cut(s) 1604, 1636
AloI GAACNNNNNNTCC 2 cut(s) 155, 187
Alw21I GWGCWC 1 cut(s) 1914
Alw26I GTCTC 2 cut(s) 53, 1037
AlwI GGATC 4 cut(s) 555, 1691, 1704, 1812
Ama87I CYCGRG 1 cut(s) 1913
AoxI GGCC 6 cut(s) 541, 684, 965, 1466, 1510, 1835
ApeKI GCWGC 2 cut(s) 707, 819
ApoI RAATTY 3 cut(s) 151, 252, 1625
ArsI GACNNNNNNTTYG 2 cut(s) 989, 1021
Asp700I GAANNNNTTC 2 cut(s) 513, 1226
AspA2I CCTAGG 1 cut(s) 76
AspLEI GCGC 1 cut(s) 1581
AspS9I GGNCC 1 cut(s) 1767
AsuC2I CCSGG 2 cut(s) 169, 545
AsuHPI GGTGA 7 cut(s) 806, 820, 1104, 1189, 1466, 1560, 2128
AvaI CYCGRG 1 cut(s) 1913
AvaII GGWCC 1 cut(s) 1767
AvrII CCTAGG 1 cut(s) 76
AxyI CCTNAGG 2 cut(s) 357, 1425
BaeI ACNNNNGTAYC 2 cut(s) 567, 600
BalI TGGCCA 1 cut(s) 686
BamHI GGATCC 1 cut(s) 1696
BanI GGYRCC 2 cut(s) 208, 722
BanII GRGCYC 2 cut(s) 478, 1914
BarI GAAGNNNNNNTAC 2 cut(s) 2000, 2032
BbsI GAAGAC 2 cut(s) 326, 389
Bbv12I GWGCWC 1 cut(s) 1914
BbvI GCAGC 2 cut(s) 694, 831
BccI CCATC 5 cut(s) 154, 278, 1648, 1738, 2048
BceAI ACGGC 3 cut(s) 54, 115, 1497
BciT130I CCWGG 4 cut(s) 376, 504, 671, 792
BciVI GTATCC 1 cut(s) 386
BclI TGATCA 2 cut(s) 273, 466
BcnI CCSGG 2 cut(s) 169, 545
BcoDI GTCTC 2 cut(s) 53, 1037
BfaI CTAG 4 cut(s) 45, 77, 1173, 2091
BfmI CTRYAG 3 cut(s) 708, 814, 1722
BfoI RGCGCY 1 cut(s) 1582
BfuAI ACCTGC 2 cut(s) 207, 1177
BfuI GTATCC 1 cut(s) 386
BisI GCNGC 3 cut(s) 42, 708, 820
BlnI CCTAGG 1 cut(s) 76
BlpI GCTNAGC 1 cut(s) 366
BlsI GCNGC 3 cut(s) 43, 709, 821
BmcAI AGTACT 2 cut(s) 1004, 2122
Bme1390I CCNGG 6 cut(s) 169, 376, 504, 545, 671, 792
Bme18I GGWCC 1 cut(s) 1767
BmeT110I CYCGRG 1 cut(s) 1913
BmgBI CACGTC 1 cut(s) 10
BmgT120I GGNCC 1 cut(s) 1767
BmiI GGNNCC 6 cut(s) 210, 477, 724, 1163, 1422, 1698
BmrFI CCNGG 6 cut(s) 169, 376, 504, 545, 671, 792
BmrI ACTGGG 1 cut(s) 1191
BmsI GCATC 4 cut(s) 285, 586, 738, 1850
BmuI ACTGGG 1 cut(s) 1191
BpiI GAAGAC 2 cut(s) 326, 389
BpmI CTGGAG 2 cut(s) 486, 963
Bpu10I CCTNAGC 2 cut(s) 1857, 2048
Bpu1102I GCTNAGC 1 cut(s) 366
BpuEI CTTGAG 2 cut(s) 1403, 2109
BpuMI CCSGG 2 cut(s) 169, 545
BsaHI GRCGYC 1 cut(s) 1828
BsaJI CCNNGG 9 cut(s) 76, 324, 375, 503, 669, 670, 790, 1463, 1832
BsaXI ACNNNNNCTCC 4 cut(s) 149, 155, 179, 185
Bsc4I CCNNNNNNNGG 4 cut(s) 174, 205, 1151, 1348
Bse118I RCCGGY 1 cut(s) 202
Bse1I ACTGG 9 cut(s) 644, 889, 946, 1197, 1259, 1330, 1708, 1816, 2064
Bse21I CCTNAGG 2 cut(s) 357, 1425
Bse3DI GCAATG 3 cut(s) 665, 1270, 1404
BseBI CCWGG 4 cut(s) 376, 504, 671, 792
BseDI CCNNGG 9 cut(s) 76, 324, 375, 503, 669, 670, 790, 1463, 1832
BseGI GGATG 5 cut(s) 300, 558, 760, 1645, 2059
BseLI CCNNNNNNNGG 4 cut(s) 174, 205, 1151, 1348
BseMI GCAATG 3 cut(s) 665, 1270, 1404
BseMII CTCAG 6 cut(s) 357, 371, 1656, 1848, 1992, 2062
BseNI ACTGG 9 cut(s) 644, 889, 946, 1197, 1259, 1330, 1708, 1816, 2064
BseRI GAGGAG 8 cut(s) 345, 1220, 1880, 1883, 1978, 2090, 2093, 2144
BseXI GCAGC 2 cut(s) 694, 831
Bsh1236I CGCG 1 cut(s) 843
BshFI GGCC 6 cut(s) 543, 686, 967, 1468, 1512, 1837
BshNI GGYRCC 2 cut(s) 208, 722
BsiHKAI GWGCWC 1 cut(s) 1914
BsiHKCI CYCGRG 1 cut(s) 1913
BsiSI CCGG 3 cut(s) 168, 203, 544
BslFI GGGAC 2 cut(s) 688, 1443
BslI CCNNNNNNNGG 4 cut(s) 174, 205, 1151, 1348
BsmAI GTCTC 2 cut(s) 53, 1037
BsmFI GGGAC 2 cut(s) 688, 1443
BsmI GAATGC 2 cut(s) 114, 1558
BsnI GGCC 6 cut(s) 543, 686, 967, 1468, 1512, 1837
BsoBI CYCGRG 1 cut(s) 1913
Bsp1286I GDGCHC 2 cut(s) 478, 1914
Bsp1407I TGTACA 1 cut(s) 691
Bsp143I GATC 9 cut(s) 273, 407, 445, 466, 547, 1291, 1401, 1696, 1804
Bsp1720I GCTNAGC 1 cut(s) 366
Bsp19I CCATGG 1 cut(s) 324
BspACI CCGC 7 cut(s) 5, 41, 206, 479, 841, 1155, 2011
BspANI GGCC 6 cut(s) 543, 686, 967, 1468, 1512, 1837
BspCNI CTCAG 6 cut(s) 358, 370, 1657, 1849, 1993, 2061
BspFNI CGCG 1 cut(s) 843
BspHI TCATGA 2 cut(s) 453, 1738
BspLI GGNNCC 6 cut(s) 210, 477, 724, 1163, 1422, 1698
BspMAI CTGCAG 2 cut(s) 712, 1726
BspMI ACCTGC 2 cut(s) 207, 1177
BspPI GGATC 4 cut(s) 555, 1691, 1704, 1812
BspT107I GGYRCC 2 cut(s) 208, 722
BsrDI GCAATG 3 cut(s) 665, 1270, 1404
BsrFI RCCGGY 1 cut(s) 202
BsrGI TGTACA 1 cut(s) 691
BsrI ACTGG 9 cut(s) 644, 889, 946, 1197, 1259, 1330, 1708, 1816, 2064
BssAI RCCGGY 1 cut(s) 202
BssECI CCNNGG 9 cut(s) 76, 324, 375, 503, 669, 670, 790, 1463, 1832
BssMI GATC 9 cut(s) 273, 407, 445, 466, 547, 1291, 1401, 1696, 1804
BssNI GRCGYC 1 cut(s) 1828
BssT1I CCWWGG 4 cut(s) 76, 324, 1463, 1832
Bst2UI CCWGG 4 cut(s) 376, 504, 671, 792
Bst4CI ACNGT 2 cut(s) 260, 691
Bst6I CTCTTC 1 cut(s) 2067
BstACI GRCGYC 1 cut(s) 1828
BstAUI TGTACA 1 cut(s) 691
BstC8I GCNNGC 9 cut(s) 204, 372, 832, 1544, 1548, 1781, 1839, 1946, 1956
BstDEI CTNAG 9 cut(s) 70, 357, 366, 489, 1425, 1665, 1857, 2001, 2048
BstDSI CCRYGG 1 cut(s) 324
BstEII GGTNACC 3 cut(s) 808, 1110, 1566
BstF5I GGATG 5 cut(s) 300, 558, 760, 1645, 2059
BstFNI CGCG 1 cut(s) 843
BstH2I RGCGCY 1 cut(s) 1582
BstHHI GCGC 1 cut(s) 1581
BstKTI GATC 9 cut(s) 276, 410, 448, 469, 550, 1294, 1404, 1699, 1807
BstMAI GTCTC 2 cut(s) 53, 1037
BstMBI GATC 9 cut(s) 273, 407, 445, 466, 547, 1291, 1401, 1696, 1804
BstMWI GCNNNNNNNGC 6 cut(s) 41, 208, 371, 664, 840, 1834
BstNI CCWGG 4 cut(s) 376, 504, 671, 792
BstNSI RCATGY 1 cut(s) 433
BstPI GGTNACC 3 cut(s) 808, 1110, 1566
BstSCI CCNGG 6 cut(s) 167, 374, 502, 543, 669, 790
BstSFI CTRYAG 3 cut(s) 708, 814, 1722
BstUI CGCG 1 cut(s) 843
BstV1I GCAGC 2 cut(s) 694, 831
BstV2I GAAGAC 2 cut(s) 326, 389
BstX2I RGATCY 1 cut(s) 1696
BstYI RGATCY 1 cut(s) 1696
Bsu36I CCTNAGG 2 cut(s) 357, 1425
BsuI GTATCC 1 cut(s) 386
BsuRI GGCC 6 cut(s) 543, 686, 967, 1468, 1512, 1837
BtgI CCRYGG 1 cut(s) 324
BtrI CACGTC 1 cut(s) 10
BtsCI GGATG 5 cut(s) 300, 558, 760, 1645, 2059
BtsIMutI CAGTG 5 cut(s) 476, 528, 687, 1237, 2071
BveI ACCTGC 2 cut(s) 207, 1177
Cac8I GCNNGC 9 cut(s) 204, 372, 832, 1544, 1548, 1781, 1839, 1946, 1956
CciI TCATGA 2 cut(s) 453, 1738
CfoI GCGC 1 cut(s) 1581
Cfr10I RCCGGY 1 cut(s) 202
Cfr13I GGNCC 1 cut(s) 1767
CseI GACGC 2 cut(s) 620, 1817
Csp6I GTAC 8 cut(s) 692, 1003, 1252, 1317, 1494, 2017, 2083, 2121
CspCI CAANNNNNGTGG 2 cut(s) 964, 999
CviAII CATG 7 cut(s) 325, 389, 430, 454, 824, 1451, 1739
CviQI GTAC 8 cut(s) 692, 1003, 1252, 1317, 1494, 2017, 2083, 2121
DdeI CTNAG 9 cut(s) 70, 357, 366, 489, 1425, 1665, 1857, 2001, 2048
DpnI GATC 9 cut(s) 275, 409, 447, 468, 549, 1293, 1403, 1698, 1806
DpnII GATC 9 cut(s) 273, 407, 445, 466, 547, 1291, 1401, 1696, 1804
DraI TTTAAA 1 cut(s) 537
DraIII CACNNNGTG 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 684
Eam1104I CTCTTC 1 cut(s) 2067
EarI CTCTTC 1 cut(s) 2067
EciI GGCGGA 2 cut(s) 20, 468
Ecl136II GAGCTC 1 cut(s) 1912
Eco130I CCWWGG 4 cut(s) 76, 324, 1463, 1832
Eco147I AGGCCT 1 cut(s) 1468
Eco24I GRGCYC 2 cut(s) 478, 1914
Eco32I GATATC 1 cut(s) 1360
Eco47I GGWCC 1 cut(s) 1767
Eco53kI GAGCTC 1 cut(s) 1912
Eco57I CTGAAG 4 cut(s) 600, 1087, 1557, 1716
Eco81I CCTNAGG 2 cut(s) 357, 1425
Eco88I CYCGRG 1 cut(s) 1913
Eco91I GGTNACC 3 cut(s) 808, 1110, 1566
EcoICRI GAGCTC 1 cut(s) 1912
EcoO65I GGTNACC 3 cut(s) 808, 1110, 1566
EcoRI GAATTC 1 cut(s) 151
EcoRII CCWGG 4 cut(s) 374, 502, 669, 790
EcoRV GATATC 1 cut(s) 1360
EcoT14I CCWWGG 4 cut(s) 76, 324, 1463, 1832
EcoT38I GRGCYC 2 cut(s) 478, 1914
ErhI CCWWGG 4 cut(s) 76, 324, 1463, 1832
FaeI CATG 7 cut(s) 328, 392, 433, 457, 827, 1454, 1742
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FaqI GGGAC 2 cut(s) 688, 1443
FatI CATG 7 cut(s) 324, 388, 429, 453, 823, 1450, 1738
FauI CCCGC 1 cut(s) 848
FbaI TGATCA 2 cut(s) 273, 466
Fnu4HI GCNGC 3 cut(s) 42, 708, 820
FokI GGATG 5 cut(s) 307, 545, 747, 1652, 2066
FriOI GRGCYC 2 cut(s) 478, 1914
Fsp4HI GCNGC 3 cut(s) 42, 708, 820
FspBI CTAG 4 cut(s) 45, 77, 1173, 2091
GlaI GCGC 1 cut(s) 1580
GluI GCNGC 3 cut(s) 42, 708, 820
GsuI CTGGAG 2 cut(s) 486, 963
HaeII RGCGCY 1 cut(s) 1582
HaeIII GGCC 6 cut(s) 543, 686, 967, 1468, 1512, 1837
HapII CCGG 3 cut(s) 168, 203, 544
HgaI GACGC 2 cut(s) 620, 1817
HhaI GCGC 1 cut(s) 1581
Hin1I GRCGYC 1 cut(s) 1828
Hin1II CATG 7 cut(s) 328, 392, 433, 457, 827, 1454, 1742
Hin6I GCGC 1 cut(s) 1579
HinP1I GCGC 1 cut(s) 1579
HindIII AAGCTT 3 cut(s) 649, 1477, 1523
HinfI GANTC 9 cut(s) 164, 244, 288, 385, 1121, 1180, 1222, 1344, 1852
HpaII CCGG 3 cut(s) 168, 203, 544
HphI GGTGA 7 cut(s) 806, 820, 1104, 1189, 1466, 1560, 2128
Hpy166II GTNNAC 3 cut(s) 625, 694, 1066
Hpy188I TCNGA 5 cut(s) 53, 157, 249, 1343, 2143
Hpy8I GTNNAC 3 cut(s) 625, 694, 1066
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 6 cut(s) 118, 604, 1581, 1597, 1780, 1969
HpyCH4III ACNGT 2 cut(s) 260, 691
HpyCH4IV ACGT 3 cut(s) 9, 240, 1052
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 208, 371, 664, 840, 1834
HpyF3I CTNAG 9 cut(s) 70, 357, 366, 489, 1425, 1665, 1857, 2001, 2048
HpySE526I ACGT 3 cut(s) 9, 240, 1052
Hsp92I GRCGYC 1 cut(s) 1828
Hsp92II CATG 7 cut(s) 328, 392, 433, 457, 827, 1454, 1742
HspAI GCGC 1 cut(s) 1579
KroI GCCGGC 1 cut(s) 202
KroNI GCCGGC 1 cut(s) 204
Ksp22I TGATCA 2 cut(s) 273, 466
Kzo9I GATC 9 cut(s) 273, 407, 445, 466, 547, 1291, 1401, 1696, 1804
LmnI GCTCC 4 cut(s) 481, 1351, 1420, 1951
Lsp1109I GCAGC 2 cut(s) 694, 831
LweI GCATC 4 cut(s) 285, 586, 738, 1850
MaeI CTAG 4 cut(s) 45, 77, 1173, 2091
MaeII ACGT 3 cut(s) 9, 240, 1052
MaeIII GTNAC 7 cut(s) 122, 140, 808, 1110, 1454, 1566, 1726
MalI GATC 9 cut(s) 275, 409, 447, 468, 549, 1293, 1403, 1698, 1806
MboI GATC 9 cut(s) 273, 407, 445, 466, 547, 1291, 1401, 1696, 1804
MfeI CAATTG 3 cut(s) 605, 930, 1937
MflI RGATCY 1 cut(s) 1696
MhlI GDGCHC 2 cut(s) 478, 1914
MlsI TGGCCA 1 cut(s) 686
MluNI TGGCCA 1 cut(s) 686
MlyI GAGTC 4 cut(s) 173, 379, 1189, 1846
MmeI TCCRAC 1 cut(s) 1602
Mox20I TGGCCA 1 cut(s) 686
MroNI GCCGGC 1 cut(s) 202
MroXI GAANNNNTTC 2 cut(s) 513, 1226
MscI TGGCCA 1 cut(s) 686
MseI TTAA 6 cut(s) 536, 906, 1211, 1284, 1536, 1799
Msp20I TGGCCA 1 cut(s) 686
MspI CCGG 3 cut(s) 168, 203, 544
MspR9I CCNGG 6 cut(s) 169, 376, 504, 545, 671, 792
MunI CAATTG 3 cut(s) 605, 930, 1937
Mva1269I GAATGC 2 cut(s) 114, 1558
MvaI CCWGG 4 cut(s) 376, 504, 671, 792
MvnI CGCG 1 cut(s) 843
MwoI GCNNNNNNNGC 6 cut(s) 41, 208, 371, 664, 840, 1834
NaeI GCCGGC 1 cut(s) 204
NciI CCSGG 2 cut(s) 169, 545
NcoI CCATGG 1 cut(s) 324
NdeII GATC 9 cut(s) 273, 407, 445, 466, 547, 1291, 1401, 1696, 1804
NgoMIV GCCGGC 1 cut(s) 202
NlaIII CATG 7 cut(s) 328, 392, 433, 457, 827, 1454, 1742
NlaIV GGNNCC 6 cut(s) 210, 477, 724, 1163, 1422, 1698
NmuCI GTSAC 6 cut(s) 122, 140, 808, 1110, 1454, 1566
NspI RCATGY 1 cut(s) 433
PaeR7I CTCGAG 1 cut(s) 1913
PagI TCATGA 2 cut(s) 453, 1738
PasI CCCWGGG 1 cut(s) 670
PceI AGGCCT 1 cut(s) 1468
PcsI WCGNNNNNNNCGW 1 cut(s) 748
PctI GAATGC 2 cut(s) 114, 1558
PdiI GCCGGC 1 cut(s) 204
PdmI GAANNNNTTC 2 cut(s) 513, 1226
PfeI GAWTC 5 cut(s) 244, 288, 1121, 1222, 1344
PkrI GCNGC 3 cut(s) 43, 709, 821
PleI GAGTC 4 cut(s) 172, 379, 1188, 1846
PpsI GAGTC 4 cut(s) 172, 379, 1188, 1846
PsiI TTATAA 1 cut(s) 1586
Psp124BI GAGCTC 1 cut(s) 1914
Psp1406I AACGTT 1 cut(s) 1052
Psp6I CCWGG 4 cut(s) 374, 502, 669, 790
PspEI GGTNACC 3 cut(s) 808, 1110, 1566
PspGI CCWGG 4 cut(s) 374, 502, 669, 790
PspN4I GGNNCC 6 cut(s) 210, 477, 724, 1163, 1422, 1698
PspPI GGNCC 1 cut(s) 1767
PspXI VCTCGAGB 1 cut(s) 1913
PstI CTGCAG 2 cut(s) 712, 1726
PsuI RGATCY 1 cut(s) 1696
RsaI GTAC 8 cut(s) 693, 1004, 1253, 1318, 1495, 2018, 2084, 2122
RsaNI GTAC 8 cut(s) 692, 1003, 1252, 1317, 1494, 2017, 2083, 2121
SacI GAGCTC 1 cut(s) 1914
SaqAI TTAA 6 cut(s) 536, 906, 1211, 1284, 1536, 1799
SatI GCNGC 3 cut(s) 42, 708, 820
Sau3AI GATC 9 cut(s) 273, 407, 445, 466, 547, 1291, 1401, 1696, 1804
Sau96I GGNCC 1 cut(s) 1767
ScaI AGTACT 2 cut(s) 1004, 2122
SchI GAGTC 4 cut(s) 173, 379, 1189, 1846
ScrFI CCNGG 6 cut(s) 169, 376, 504, 545, 671, 792
SduI GDGCHC 2 cut(s) 478, 1914
SfaNI GCATC 4 cut(s) 285, 586, 738, 1850
SfcI CTRYAG 3 cut(s) 708, 814, 1722
Sfr274I CTCGAG 1 cut(s) 1913
SinI GGWCC 1 cut(s) 1767
SlaI CTCGAG 1 cut(s) 1913
SmlI CTYRAG 3 cut(s) 1382, 1913, 2124
SmoI CTYRAG 3 cut(s) 1382, 1913, 2124
SseBI AGGCCT 1 cut(s) 1468
SsiI CCGC 7 cut(s) 5, 41, 206, 479, 841, 1155, 2011
SspI AATATT 1 cut(s) 803
SspMI CTAG 4 cut(s) 45, 77, 1173, 2091
SstI GAGCTC 1 cut(s) 1914
StuI AGGCCT 1 cut(s) 1468
StyD4I CCNGG 6 cut(s) 167, 374, 502, 543, 669, 790
StyI CCWWGG 4 cut(s) 76, 324, 1463, 1832
TaaI ACNGT 2 cut(s) 260, 691
TaiI ACGT 3 cut(s) 12, 243, 1055
TaqI TCGA 5 cut(s) 192, 225, 303, 342, 1914
TaqII GACCGA 1 cut(s) 128
TatI WGTACW 5 cut(s) 691, 1002, 1251, 1316, 2120
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 5 cut(s) 244, 288, 1121, 1222, 1344
Tru1I TTAA 6 cut(s) 536, 906, 1211, 1284, 1536, 1799
Tru9I TTAA 6 cut(s) 536, 906, 1211, 1284, 1536, 1799
TscAI CASTG 5 cut(s) 476, 535, 694, 1237, 2071
TseFI GTSAC 6 cut(s) 122, 140, 808, 1110, 1454, 1566
TseI GCWGC 2 cut(s) 707, 819
Tsp45I GTSAC 6 cut(s) 122, 140, 808, 1110, 1454, 1566
TspDTI ATGAA 9 cut(s) 35, 144, 328, 442, 470, 840, 1439, 1727, 2085
TspGWI ACGGA 2 cut(s) 77, 551
TspRI CASTG 5 cut(s) 476, 535, 694, 1237, 2071
VpaK11BI GGWCC 1 cut(s) 1767
XapI RAATTY 3 cut(s) 151, 252, 1625
XceI RCATGY 1 cut(s) 433
XhoI CTCGAG 1 cut(s) 1913
XmaJI CCTAGG 1 cut(s) 76
XmnI GAANNNNTTC 2 cut(s) 513, 1226
XspI CTAG 4 cut(s) 45, 77, 1173, 2091
ZrmI AGTACT 2 cut(s) 1004, 2122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.