Rroxscaffold_1G00069610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000112
Physical Location & Seq
Reverse (-)
90533263 .. 90534052
790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00069610.1

Sequence Viewer

Length: 399 bp
ATGTTGGAGATTGTAAGTGGCCGGAAAAACAATGATTCTGATCCGGAGGATCCTTCCATGAACTTGATAGCACGTTTCGACGCCGTCAAGTTTCCTAGAGAGAGAAAAAGTGAGCGCTCCCGTCCCTGTCCGGCGGCGAGCCTCGCGCCGTCGTCGGACGGGCTTTGTCCACTTTGTGTGAGTCCGGTGTGTTCGAGGTGGCCATTTGGAAGAGGAAGGCCGAGTTGGGAGTCGGATTTTGGTTCGGACTTGCGGTACTTGTCGCCGGCGTGGTTCGGTGGGGGGTTGTTGGCTCGGATCAATGGGGTTTGGATCGAGGCGGAGTGGATTGGAACGAGTTGGCTCGGCGCGATATCGGAGATTGACCGGCGGCCTCTAATCCGTGGCGGCGCCGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.51

Weight (kDa)

7.65

Isoelectric Point (pI)

64.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 389
AccII CGCG 2 cut(s) 146, 350
AccIII TCCGGA 1 cut(s) 43
AciI CCGC 5 cut(s) 134, 253, 320, 370, 387
AclWI GGATC 5 cut(s) 35, 44, 57, 305, 320
AcoI YGGCCR 2 cut(s) 19, 200
AcyI GRCGYC 2 cut(s) 81, 390
AdeI CACNNNGTG 1 cut(s) 176
AfaI GTAC 1 cut(s) 257
AfeI AGCGCT 1 cut(s) 116
AjuI GAANNNNNNNTTGG 2 cut(s) 208, 240
AlwI GGATC 5 cut(s) 35, 44, 57, 305, 320
Aor13HI TCCGGA 1 cut(s) 43
Aor51HI AGCGCT 1 cut(s) 116
AoxI GGCC 4 cut(s) 19, 200, 218, 371
AspLEI GCGC 4 cut(s) 117, 148, 350, 392
AsuC2I CCSGG 1 cut(s) 394
BalI TGGCCA 1 cut(s) 202
BamHI GGATCC 1 cut(s) 49
BanI GGYRCC 1 cut(s) 389
BceAI ACGGC 2 cut(s) 68, 133
BcnI CCSGG 1 cut(s) 394
BfaI CTAG 1 cut(s) 96
BfoI RGCGCY 2 cut(s) 118, 393
BisI GCNGC 3 cut(s) 135, 371, 388
BlsI GCNGC 3 cut(s) 136, 372, 389
Bme1390I CCNGG 1 cut(s) 394
BmiI GGNNCC 2 cut(s) 51, 391
BmrFI CCNGG 1 cut(s) 394
BpuMI CCSGG 1 cut(s) 394
BsaBI GATNNNNATC 1 cut(s) 39
BsaHI GRCGYC 2 cut(s) 81, 390
BsaJI CCNNGG 1 cut(s) 382
BsaWI WCCGGW 2 cut(s) 43, 184
Bse118I RCCGGY 2 cut(s) 265, 366
Bse8I GATNNNNATC 1 cut(s) 39
BseAI TCCGGA 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 382
BseJI GATNNNNATC 1 cut(s) 39
Bsh1236I CGCG 2 cut(s) 146, 350
BshFI GGCC 4 cut(s) 21, 202, 220, 373
BshNI GGYRCC 1 cut(s) 389
BsiSI CCGG 7 cut(s) 22, 44, 131, 185, 266, 367, 393
BslFI GGGAC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 108
BsnI GGCC 4 cut(s) 21, 202, 220, 373
Bsp13I TCCGGA 1 cut(s) 43
Bsp143I GATC 4 cut(s) 40, 49, 297, 312
BspACI CCGC 5 cut(s) 134, 253, 320, 370, 387
BspANI GGCC 4 cut(s) 21, 202, 220, 373
BspEI TCCGGA 1 cut(s) 43
BspFNI CGCG 2 cut(s) 146, 350
BspLI GGNNCC 2 cut(s) 51, 391
BspPI GGATC 5 cut(s) 35, 44, 57, 305, 320
BspT107I GGYRCC 1 cut(s) 389
BsrFI RCCGGY 2 cut(s) 265, 366
BssAI RCCGGY 2 cut(s) 265, 366
BssECI CCNNGG 1 cut(s) 382
BssMI GATC 4 cut(s) 40, 49, 297, 312
BssNI GRCGYC 2 cut(s) 81, 390
Bst6I CTCTTC 1 cut(s) 205
BstACI GRCGYC 2 cut(s) 81, 390
BstC8I GCNNGC 2 cut(s) 139, 267
BstDSI CCRYGG 1 cut(s) 382
BstFNI CGCG 2 cut(s) 146, 350
BstH2I RGCGCY 2 cut(s) 118, 393
BstHHI GCGC 4 cut(s) 117, 148, 350, 392
BstKTI GATC 4 cut(s) 43, 52, 300, 315
BstMBI GATC 4 cut(s) 40, 49, 297, 312
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 392
BstUI CGCG 2 cut(s) 146, 350
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BsuRI GGCC 4 cut(s) 21, 202, 220, 373
BtgI CCRYGG 1 cut(s) 382
Cac8I GCNNGC 2 cut(s) 139, 267
CfoI GCGC 4 cut(s) 117, 148, 350, 392
Cfr10I RCCGGY 2 cut(s) 265, 366
CseI GACGC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 256
CviAII CATG 1 cut(s) 58
CviJI RGCY 8 cut(s) 21, 141, 163, 202, 220, 293, 343, 373
CviKI_1 RGCY 8 cut(s) 21, 141, 163, 202, 220, 293, 343, 373
CviQI GTAC 1 cut(s) 256
DinI GGCGCC 1 cut(s) 391
DpnI GATC 4 cut(s) 42, 51, 299, 314
DpnII GATC 4 cut(s) 40, 49, 297, 312
DraIII CACNNNGTG 1 cut(s) 176
EaeI YGGCCR 2 cut(s) 19, 200
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
EciI GGCGGA 1 cut(s) 335
Eco32I GATATC 1 cut(s) 354
Eco47III AGCGCT 1 cut(s) 116
EcoRV GATATC 1 cut(s) 354
EgeI GGCGCC 1 cut(s) 391
EheI GGCGCC 1 cut(s) 391
FaeI CATG 1 cut(s) 61
FaiI YATR 1 cut(s) 59
FaqI GGGAC 1 cut(s) 108
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 3 cut(s) 135, 371, 388
Fsp4HI GCNGC 3 cut(s) 135, 371, 388
FspBI CTAG 1 cut(s) 96
GlaI GCGC 4 cut(s) 116, 147, 349, 391
GluI GCNGC 3 cut(s) 135, 371, 388
HaeII RGCGCY 2 cut(s) 118, 393
HaeIII GGCC 4 cut(s) 21, 202, 220, 373
HapII CCGG 7 cut(s) 22, 44, 131, 185, 266, 367, 393
HgaI GACGC 1 cut(s) 89
HhaI GCGC 4 cut(s) 117, 148, 350, 392
Hin1I GRCGYC 2 cut(s) 81, 390
Hin1II CATG 1 cut(s) 61
Hin6I GCGC 4 cut(s) 115, 146, 348, 390
HinP1I GCGC 4 cut(s) 115, 146, 348, 390
HinfI GANTC 3 cut(s) 35, 181, 230
HpaII CCGG 7 cut(s) 22, 44, 131, 185, 266, 367, 393
Hpy166II GTNNAC 1 cut(s) 170
Hpy188I TCNGA 6 cut(s) 40, 157, 235, 247, 297, 358
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 1 cut(s) 170
Hpy99I CGWCG 3 cut(s) 83, 154, 157
HpyAV CCTTC 2 cut(s) 63, 210
HpyCH4IV ACGT 1 cut(s) 73
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpySE526I ACGT 1 cut(s) 73
Hsp92I GRCGYC 2 cut(s) 81, 390
Hsp92II CATG 1 cut(s) 61
HspAI GCGC 4 cut(s) 115, 146, 348, 390
KasI GGCGCC 1 cut(s) 389
Kpn2I TCCGGA 1 cut(s) 43
KroI GCCGGC 1 cut(s) 265
KroNI GCCGGC 1 cut(s) 267
Kzo9I GATC 4 cut(s) 40, 49, 297, 312
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 7 cut(s) 35, 57, 139, 144, 198, 279, 380
MaeI CTAG 1 cut(s) 96
MaeII ACGT 1 cut(s) 73
MalI GATC 4 cut(s) 42, 51, 299, 314
MboI GATC 4 cut(s) 40, 49, 297, 312
MboII GAAGA 1 cut(s) 222
MflI RGATCY 1 cut(s) 49
MlsI TGGCCA 1 cut(s) 202
MluNI TGGCCA 1 cut(s) 202
Mly113I GGCGCC 1 cut(s) 390
MlyI GAGTC 2 cut(s) 190, 239
MmeI TCCRAC 2 cut(s) 135, 213
MnlI CCTC 6 cut(s) 40, 152, 189, 206, 310, 384
Mox20I TGGCCA 1 cut(s) 202
MreI CGCCGGCG 1 cut(s) 265
MroI TCCGGA 1 cut(s) 43
MroNI GCCGGC 1 cut(s) 265
MscI TGGCCA 1 cut(s) 202
Msp20I TGGCCA 1 cut(s) 202
MspI CCGG 7 cut(s) 22, 44, 131, 185, 266, 367, 393
MspR9I CCNGG 1 cut(s) 394
MvnI CGCG 2 cut(s) 146, 350
MwoI GCNNNNNNNGC 1 cut(s) 143
NaeI GCCGGC 1 cut(s) 267
NarI GGCGCC 1 cut(s) 390
NciI CCSGG 1 cut(s) 394
NdeII GATC 4 cut(s) 40, 49, 297, 312
NgoMIV GCCGGC 1 cut(s) 265
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 2 cut(s) 51, 391
NmeAIII GCCGAG 2 cut(s) 246, 324
PdiI GCCGGC 1 cut(s) 267
PfeI GAWTC 1 cut(s) 35
PflFI GACNNNGTC 1 cut(s) 83
PkrI GCNGC 3 cut(s) 136, 372, 389
PleI GAGTC 2 cut(s) 189, 238
PluTI GGCGCC 1 cut(s) 393
PpsI GAGTC 2 cut(s) 189, 238
PspN4I GGNNCC 2 cut(s) 51, 391
PsuI RGATCY 1 cut(s) 49
PsyI GACNNNGTC 1 cut(s) 83
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SatI GCNGC 3 cut(s) 135, 371, 388
Sau3AI GATC 4 cut(s) 40, 49, 297, 312
SchI GAGTC 2 cut(s) 190, 239
ScrFI CCNGG 1 cut(s) 394
SetI ASST 2 cut(s) 76, 200
SfoI GGCGCC 1 cut(s) 391
SgrAI CRCCGGYG 1 cut(s) 265
SsiI CCGC 5 cut(s) 134, 253, 320, 370, 387
SspDI GGCGCC 1 cut(s) 389
SspMI CTAG 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 392
TaiI ACGT 1 cut(s) 76
TaqI TCGA 3 cut(s) 78, 194, 315
TauI GCSGC 3 cut(s) 137, 373, 390
TfiI GAWTC 1 cut(s) 35
TspDTI ATGAA 1 cut(s) 74
TspGWI ACGGA 1 cut(s) 371
Tth111I GACNNNGTC 1 cut(s) 83
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.