Rh5CG340700

serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
39041233 .. 39041784
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG340700.1

Sequence Viewer

Length: 552 bp
ATGAGAGGGAACGAAGGACAATTGAAGGATGCTGATGGTGACTATTTAGTGTCCAAAGAAAGCAAGTTTGAATTGGGTTTCTTCAGCCCCGGAAATTCTAGCTACCGGTATGTTGGAATCTGGTATTCTCAGACTAGAGTACCTAATAAAACAGTGGTGTGGATTGCAAACAGGAACAATCCCATCAATGATACCTCTGGTGTGCTCACAATGAACAGGTATGGAGAACTAGTCCTTTATGCTTATAACATGGAGAGCAGCCCTATATGGTCCACAAATGTGTCGCGGTCGGTTCAAAATGTTAACACAAGCACTTTATCTGCACAGCTTTTGGATACAGGAAATTTAGTTGTGTTCCAGGATGATAAAAATGAAATCTTTATATGGCAAAGTTTTGATTATCCTATAGATACTTTAATTCCAGGTATGAAAGTTGGGGTGAATTGGAAAACTGGGCAAGAATGGGTTTTAACATCTTGGAAGTCACAAGATGACCCTGGAACTGGGGACTATACCTATAGGCTAAGTTCAGATCATAATGCATCTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

183

Amino Acids

20.72

Weight (kDa)

4.81

Isoelectric Point (pI)

24.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 51 - 161 4.5e-36 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 246
AccII CGCG 1 cut(s) 286
AciI CCGC 1 cut(s) 286
AcsI RAATTY 2 cut(s) 94, 343
AcuI CTGAAG 1 cut(s) 67
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 1 cut(s) 503
AgeI ACCGGT 1 cut(s) 105
AgsI TTSAA 3 cut(s) 25, 71, 296
AhlI ACTAGT 1 cut(s) 229
AjnI CCWGG 3 cut(s) 357, 421, 496
AleI CACNNNNGTG 1 cut(s) 278
AluBI AGCT 2 cut(s) 102, 328
AluI AGCT 2 cut(s) 102, 328
Alw21I GWGCWC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 258
ApoI RAATTY 2 cut(s) 94, 343
AsiGI ACCGGT 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 270
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 2 cut(s) 50, 451
AvaII GGWCC 1 cut(s) 270
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 270
BccI CCATC 2 cut(s) 29, 191
BciT130I CCWGG 3 cut(s) 359, 423, 498
BciVI GTATCC 1 cut(s) 328
BcnI CCSGG 1 cut(s) 90
BcuI ACTAGT 1 cut(s) 229
BfaI CTAG 3 cut(s) 99, 135, 230
BfmI CTRYAG 2 cut(s) 405, 517
BfuI GTATCC 1 cut(s) 328
BisI GCNGC 1 cut(s) 259
BlsI GCNGC 1 cut(s) 260
Bme1390I CCNGG 4 cut(s) 90, 359, 423, 498
Bme18I GGWCC 1 cut(s) 270
BmgT120I GGNCC 1 cut(s) 270
BmrFI CCNGG 4 cut(s) 90, 359, 423, 498
BmrI ACTGGG 2 cut(s) 462, 513
BmsI GCATC 1 cut(s) 19
BmuI ACTGGG 2 cut(s) 462, 513
BpuMI CCSGG 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 88, 496
BsaWI WCCGGW 1 cut(s) 105
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
Bsc4I CCNNNNNNNGG 1 cut(s) 503
Bse118I RCCGGY 1 cut(s) 105
Bse1I ACTGG 2 cut(s) 457, 508
BseBI CCWGG 3 cut(s) 359, 423, 498
BseDI CCNNGG 2 cut(s) 88, 496
BseGI GGATG 2 cut(s) 34, 367
BseLI CCNNNNNNNGG 1 cut(s) 503
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 2 cut(s) 457, 508
BseXI GCAGC 1 cut(s) 270
BsgI GTGCAG 1 cut(s) 306
Bsh1236I CGCG 1 cut(s) 286
Bsh1285I CGRYCG 1 cut(s) 290
BshTI ACCGGT 1 cut(s) 105
BsiEI CGRYCG 1 cut(s) 290
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 2 cut(s) 90, 106
BslFI GGGAC 1 cut(s) 521
BslI CCNNNNNNNGG 1 cut(s) 503
BsmFI GGGAC 1 cut(s) 521
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 532
BspACI CCGC 1 cut(s) 286
BspCNI CTCAG 1 cut(s) 142
BspFNI CGCG 1 cut(s) 286
BsrFI RCCGGY 1 cut(s) 105
BsrI ACTGG 2 cut(s) 457, 508
BssAI RCCGGY 1 cut(s) 105
BssECI CCNNGG 2 cut(s) 88, 496
BssMI GATC 1 cut(s) 532
Bst2UI CCWGG 3 cut(s) 359, 423, 498
Bst4CI ACNGT 1 cut(s) 154
BstDEI CTNAG 2 cut(s) 129, 524
BstF5I GGATG 2 cut(s) 34, 367
BstFNI CGCG 1 cut(s) 286
BstKTI GATC 1 cut(s) 535
BstMBI GATC 1 cut(s) 532
BstMCI CGRYCG 1 cut(s) 290
BstNI CCWGG 3 cut(s) 359, 423, 498
BstSCI CCNGG 4 cut(s) 88, 357, 421, 496
BstSFI CTRYAG 2 cut(s) 405, 517
BstUI CGCG 1 cut(s) 286
BstV1I GCAGC 1 cut(s) 270
BsuI GTATCC 1 cut(s) 328
BtsCI GGATG 2 cut(s) 34, 367
BtsIMutI CAGTG 1 cut(s) 159
Cfr10I RCCGGY 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 270
Csp6I GTAC 1 cut(s) 140
CspAI ACCGGT 1 cut(s) 105
CviAII CATG 1 cut(s) 250
CviJI RGCY 5 cut(s) 87, 102, 261, 328, 523
CviKI_1 RGCY 5 cut(s) 87, 102, 261, 328, 523
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 2 cut(s) 129, 524
DpnI GATC 1 cut(s) 534
DpnII GATC 1 cut(s) 532
Eco47I GGWCC 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 67
EcoRII CCWGG 3 cut(s) 357, 421, 496
EcoT22I ATGCAT 1 cut(s) 544
FaeI CATG 1 cut(s) 253
FaqI GGGAC 1 cut(s) 521
FatI CATG 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 259
FokI GGATG 2 cut(s) 41, 374
Fsp4HI GCNGC 1 cut(s) 259
FspBI CTAG 3 cut(s) 99, 135, 230
GluI GCNGC 1 cut(s) 259
HapII CCGG 2 cut(s) 90, 106
Hin1II CATG 1 cut(s) 253
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HinfI GANTC 1 cut(s) 117
HpaI GTTAAC 1 cut(s) 304
HpaII CCGG 2 cut(s) 90, 106
HphI GGTGA 2 cut(s) 50, 451
Hpy166II GTNNAC 2 cut(s) 273, 304
Hpy188I TCNGA 2 cut(s) 132, 532
Hpy8I GTNNAC 2 cut(s) 273, 304
HpyAV CCTTC 2 cut(s) 8, 19
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 3 cut(s) 167, 323, 542
HpyF3I CTNAG 2 cut(s) 129, 524
Hsp92II CATG 1 cut(s) 253
KspAI GTTAAC 1 cut(s) 304
Kzo9I GATC 1 cut(s) 532
Lsp1109I GCAGC 1 cut(s) 270
LweI GCATC 1 cut(s) 19
MaeI CTAG 3 cut(s) 99, 135, 230
MaeIII GTNAC 2 cut(s) 38, 483
MalI GATC 1 cut(s) 534
MboI GATC 1 cut(s) 532
MboII GAAGA 1 cut(s) 73
MfeI CAATTG 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 6 cut(s) 20, 71, 94, 343, 417, 442
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 1 cut(s) 205
Mph1103I ATGCAT 1 cut(s) 544
MseI TTAA 3 cut(s) 303, 416, 470
MslI CAYNNNNRTG 1 cut(s) 278
MspI CCGG 2 cut(s) 90, 106
MspR9I CCNGG 4 cut(s) 90, 359, 423, 498
MunI CAATTG 1 cut(s) 20
MvaI CCWGG 3 cut(s) 359, 423, 498
MvnI CGCG 1 cut(s) 286
NciI CCSGG 1 cut(s) 90
NdeII GATC 1 cut(s) 532
NlaIII CATG 1 cut(s) 253
NmuCI GTSAC 2 cut(s) 38, 483
NsiI ATGCAT 1 cut(s) 544
OliI CACNNNNGTG 1 cut(s) 278
PfeI GAWTC 1 cut(s) 117
PfoI TCCNGGA 1 cut(s) 357
PinAI ACCGGT 1 cut(s) 105
PkrI GCNGC 1 cut(s) 260
PsiI TTATAA 1 cut(s) 246
Psp6I CCWGG 3 cut(s) 357, 421, 496
PspGI CCWGG 3 cut(s) 357, 421, 496
PspPI GGNCC 1 cut(s) 270
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 278
SaqAI TTAA 3 cut(s) 303, 416, 470
SatI GCNGC 1 cut(s) 259
Sau3AI GATC 1 cut(s) 532
Sau96I GGNCC 1 cut(s) 270
ScrFI CCNGG 4 cut(s) 90, 359, 423, 498
SduI GDGCHC 1 cut(s) 207
SetI ASST 7 cut(s) 104, 145, 197, 221, 330, 427, 518
SfaNI GCATC 1 cut(s) 19
SfcI CTRYAG 2 cut(s) 405, 517
SinI GGWCC 1 cut(s) 270
SmiMI CAYNNNNRTG 1 cut(s) 278
SpeI ACTAGT 1 cut(s) 229
Sse9I AATT 6 cut(s) 20, 71, 94, 343, 417, 442
SsiI CCGC 1 cut(s) 286
SspMI CTAG 3 cut(s) 99, 135, 230
StyD4I CCNGG 4 cut(s) 88, 357, 421, 496
TaaI ACNGT 1 cut(s) 154
TasI AATT 6 cut(s) 20, 71, 94, 343, 417, 442
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 3 cut(s) 303, 416, 470
Tru9I TTAA 3 cut(s) 303, 416, 470
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 2 cut(s) 38, 483
TseI GCWGC 1 cut(s) 258
Tsp45I GTSAC 2 cut(s) 38, 483
TspDTI ATGAA 3 cut(s) 227, 387, 443
TspRI CASTG 1 cut(s) 159
VpaK11BI GGWCC 1 cut(s) 270
XapI RAATTY 2 cut(s) 94, 343
XspI CTAG 3 cut(s) 99, 135, 230
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.