pycom05g30200

serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
30383422 .. 30383649
228 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g30200.1

Sequence Viewer

Length: 228 bp
ATGAGATGCATTCAAGTCGGGCTCTTGTGTGTCGAAGAAGAGTCGAAGAACAGACCATCCATGTCAGCTGTTGTTTTTATGTTGAGCGGTGAAGCATCTGCTCCATCTCCTCAGCAGCCTGCATTTGCCTTGAGAAGAAATTCATGCGGCGATGCTACAGTTCCATCAGTTTCCAAAGGATCGTGTTCTATCAACGACGTGACAATAACTAAATTCGAAGGTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

76

Amino Acids

7.98

Weight (kDa)

7.65

Isoelectric Point (pI)

71.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3403 PF11883 33 - 75 1.7e-07 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 87
AciI CCGC 2 cut(s) 87, 147
AclWI GGATC 1 cut(s) 187
AcsI RAATTY 2 cut(s) 139, 212
AgsI TTSAA 1 cut(s) 14
AjiI CACGTC 1 cut(s) 199
AloI GAACNNNNNNTCC 2 cut(s) 41, 73
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
AlwI GGATC 1 cut(s) 187
ApeKI GCWGC 1 cut(s) 115
ApoI RAATTY 2 cut(s) 139, 212
Asp700I GAANNNNTTC 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 101
AsuII TTCGAA 1 cut(s) 216
BanII GRGCYC 1 cut(s) 24
BbvCI CCTCAGC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 127
BccI CCATC 3 cut(s) 64, 112, 172
BcgI CGANNNNNNTGC 1 cut(s) 32
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 2 cut(s) 116, 148
BlsI GCNGC 2 cut(s) 117, 149
BmgBI CACGTC 1 cut(s) 199
BmsI GCATC 2 cut(s) 104, 142
Bpu10I CCTNAGC 1 cut(s) 111
Bpu14I TTCGAA 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 151
BseGI GGATG 1 cut(s) 56
BseMII CTCAG 1 cut(s) 125
BseRI GAGGAG 1 cut(s) 99
BseXI GCAGC 1 cut(s) 127
BsmI GAATGC 1 cut(s) 9
Bsp119I TTCGAA 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 1 cut(s) 179
BspACI CCGC 2 cut(s) 87, 147
BspCNI CTCAG 1 cut(s) 124
BspPI GGATC 1 cut(s) 187
BspT104I TTCGAA 1 cut(s) 216
BsrBI CCGCTC 1 cut(s) 87
BssMI GATC 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 33
BstBI TTCGAA 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 56
BstKTI GATC 1 cut(s) 182
BstMBI GATC 1 cut(s) 179
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 127
BtgZI GCGATG 1 cut(s) 165
BtrI CACGTC 1 cut(s) 199
BtsCI GGATG 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 120
CviAII CATG 2 cut(s) 61, 144
CviJI RGCY 3 cut(s) 22, 68, 118
CviKI_1 RGCY 3 cut(s) 22, 68, 118
DdeI CTNAG 1 cut(s) 111
DpnI GATC 1 cut(s) 181
DpnII GATC 1 cut(s) 179
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 11
EcoT38I GRGCYC 1 cut(s) 24
FaeI CATG 2 cut(s) 64, 147
FaiI YATR 3 cut(s) 62, 80, 145
FatI CATG 2 cut(s) 60, 143
Fnu4HI GCNGC 2 cut(s) 116, 148
FokI GGATG 1 cut(s) 43
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 2 cut(s) 116, 148
GluI GCNGC 2 cut(s) 116, 148
Hin1II CATG 2 cut(s) 64, 147
HinfI GANTC 1 cut(s) 41
HphI GGTGA 1 cut(s) 101
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 212
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 2 cut(s) 9, 122
HpyF3I CTNAG 1 cut(s) 111
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 2 cut(s) 64, 147
Kzo9I GATC 1 cut(s) 179
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 1 cut(s) 132
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 2 cut(s) 104, 142
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 199
MalI GATC 1 cut(s) 181
MbiI CCGCTC 1 cut(s) 87
MboI GATC 1 cut(s) 179
MboII GAAGA 4 cut(s) 47, 50, 58, 147
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 2 cut(s) 139, 212
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 1 cut(s) 120
Mph1103I ATGCAT 1 cut(s) 11
MroXI GAANNNNTTC 1 cut(s) 139
MspA1I CMGCKG 1 cut(s) 68
Mva1269I GAATGC 1 cut(s) 9
NdeII GATC 1 cut(s) 179
NlaIII CATG 2 cut(s) 64, 147
NmuCI GTSAC 1 cut(s) 199
NsiI ATGCAT 1 cut(s) 11
NspV TTCGAA 1 cut(s) 216
PctI GAATGC 1 cut(s) 9
PdmI GAANNNNTTC 1 cut(s) 139
PkrI GCNGC 2 cut(s) 117, 149
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PvuII CAGCTG 1 cut(s) 68
SatI GCNGC 2 cut(s) 116, 148
Sau3AI GATC 1 cut(s) 179
SchI GAGTC 1 cut(s) 50
SduI GDGCHC 1 cut(s) 24
SetI ASST 3 cut(s) 70, 201, 223
SfaNI GCATC 2 cut(s) 104, 142
SfcI CTRYAG 1 cut(s) 156
SfuI TTCGAA 1 cut(s) 216
SgeI CNNG 9 cut(s) 26, 31, 37, 73, 131, 142, 156, 195, 211
SmlI CTYRAG 1 cut(s) 130
SmoI CTYRAG 1 cut(s) 130
Sse9I AATT 2 cut(s) 139, 212
SsiI CCGC 2 cut(s) 87, 147
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 1 cut(s) 201
TaqI TCGA 4 cut(s) 33, 44, 216, 223
TasI AATT 2 cut(s) 139, 212
TauI GCSGC 1 cut(s) 150
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 1 cut(s) 132
XapI RAATTY 2 cut(s) 139, 212
XmnI GAANNNNTTC 1 cut(s) 139
Zsp2I ATGCAT 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.