RchiOBHm_Chr3g0476681

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000112
Physical Location & Seq
Forward (+)
22682127 .. 22684153
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44207

Sequence Viewer

Length: 261 bp
ATGAGCCGACATTCTAAAATATTTTCATGGTGGTTCAGACTTCAGAGATATGAATTGTTTATGCACCAGTTGTATCTAGCAGGCGCTTGGAAAACTGGTCAAGAATGGTTCTTAACATCTTGGAAGTCACAAGATTATCCTGGAACTGGGAACTATACCTCTAGGCTCTATCCGAATTGGAATCAAAGTGCTAAGCCCCAGTATTTTGTGTATCAAGATTTGACAAGGTACTGGCGAAGTGATCCATGGGCCATGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

86

Amino Acids

10.69

Weight (kDa)

9.69

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 26
AfaI GTAC 1 cut(s) 230
AfiI CCNNNNNNNGG 1 cut(s) 146
AjnI CCWGG 1 cut(s) 139
AlwI GGATC 1 cut(s) 236
AoxI GGCC 2 cut(s) 249, 255
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 249
BciT130I CCWGG 1 cut(s) 141
BfaI CTAG 3 cut(s) 77, 162, 259
BfoI RGCGCY 1 cut(s) 87
BlpI GCTNAGC 1 cut(s) 192
Bme1390I CCNGG 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 141
BmrI ACTGGG 2 cut(s) 156, 193
BmuI ACTGGG 2 cut(s) 156, 193
Bpu1102I GCTNAGC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 245, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse1I ACTGG 5 cut(s) 67, 100, 151, 199, 236
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 2 cut(s) 245, 252
BseLI CCNNNNNNNGG 1 cut(s) 146
BseNI ACTGG 5 cut(s) 67, 100, 151, 199, 236
BshFI GGCC 2 cut(s) 251, 257
BslI CCNNNNNNNGG 1 cut(s) 146
BsnI GGCC 2 cut(s) 251, 257
Bsp143I GATC 1 cut(s) 241
Bsp1720I GCTNAGC 1 cut(s) 192
Bsp19I CCATGG 2 cut(s) 245, 252
BspANI GGCC 2 cut(s) 251, 257
BspPI GGATC 1 cut(s) 236
BsrI ACTGG 5 cut(s) 67, 100, 151, 199, 236
BssECI CCNNGG 2 cut(s) 245, 252
BssMI GATC 1 cut(s) 241
BssT1I CCWWGG 2 cut(s) 245, 252
Bst2UI CCWGG 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 1 cut(s) 192
BstDSI CCRYGG 2 cut(s) 245, 252
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 1 cut(s) 244
BstMBI GATC 1 cut(s) 241
BstNI CCWGG 1 cut(s) 141
BstSCI CCNGG 1 cut(s) 139
BsuRI GGCC 2 cut(s) 251, 257
BtgI CCRYGG 2 cut(s) 245, 252
Cac8I GCNNGC 1 cut(s) 82
CfoI GCGC 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 249
Csp6I GTAC 1 cut(s) 229
CviAII CATG 3 cut(s) 27, 246, 253
CviJI RGCY 5 cut(s) 6, 166, 196, 251, 257
CviKI_1 RGCY 5 cut(s) 6, 166, 196, 251, 257
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 1 cut(s) 192
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
Eco130I CCWWGG 2 cut(s) 245, 252
Eco57I CTGAAG 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 139
EcoT14I CCWWGG 2 cut(s) 245, 252
ErhI CCWWGG 2 cut(s) 245, 252
FaeI CATG 3 cut(s) 30, 249, 256
FaiI YATR 6 cut(s) 28, 51, 62, 156, 247, 254
FatI CATG 3 cut(s) 26, 245, 252
FspBI CTAG 3 cut(s) 77, 162, 259
GlaI GCGC 1 cut(s) 85
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 2 cut(s) 251, 257
HhaI GCGC 1 cut(s) 86
Hin1II CATG 3 cut(s) 30, 249, 256
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HinfI GANTC 1 cut(s) 181
Hpy188I TCNGA 3 cut(s) 38, 45, 174
Hpy188III TCNNGA 2 cut(s) 101, 215
HpyCH4V TGCA 1 cut(s) 64
HpyF3I CTNAG 1 cut(s) 192
Hsp92II CATG 3 cut(s) 30, 249, 256
HspAI GCGC 1 cut(s) 84
Kzo9I GATC 1 cut(s) 241
LpnPI CCDG 8 cut(s) 66, 80, 81, 126, 132, 153, 212, 217
MaeI CTAG 3 cut(s) 77, 162, 259
MaeIII GTNAC 1 cut(s) 126
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MluCI AATT 2 cut(s) 53, 175
MnlI CCTC 1 cut(s) 169
MseI TTAA 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 141
MvaI CCWGG 1 cut(s) 141
NcoI CCATGG 2 cut(s) 245, 252
NdeII GATC 1 cut(s) 241
NlaIII CATG 3 cut(s) 30, 249, 256
NmuCI GTSAC 1 cut(s) 126
PfeI GAWTC 1 cut(s) 181
PfoI TCCNGGA 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspPI GGNCC 1 cut(s) 249
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
SaqAI TTAA 1 cut(s) 113
Sau3AI GATC 1 cut(s) 241
Sau96I GGNCC 1 cut(s) 249
ScrFI CCNGG 1 cut(s) 141
SetI ASST 2 cut(s) 161, 230
Sse9I AATT 2 cut(s) 53, 175
SspI AATATT 1 cut(s) 21
SspMI CTAG 3 cut(s) 77, 162, 259
StyD4I CCNGG 1 cut(s) 139
StyI CCWWGG 2 cut(s) 245, 252
TasI AATT 2 cut(s) 53, 175
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TseFI GTSAC 1 cut(s) 126
Tsp45I GTSAC 1 cut(s) 126
TspDTI ATGAA 2 cut(s) 15, 66
XspI CTAG 3 cut(s) 77, 162, 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.