Rroxscaffold_1G00069570

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000112
Physical Location & Seq
Reverse (-)
90506349 .. 90508473
2125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00069570.1

Sequence Viewer

Length: 990 bp
ATGACACCAATGCAATTACAAGAGCAACGGTGGTCGCACGCAGTAGAAAGCCTTACATGGGATGATGGTGGCCTTCAATGGAAGGTAGGCTTCGCTGCACCGAAGTCCTGTGTGACTGGTATGGAGAGTGCGGTGCCAACAGCAAATTGTGGAGATGGAGACGGGTTTGTGAAGGCGGCAAGAGTTAAATATCCCGACACATCGATAGGAGCATTGTCAAAATTAGGTATGAGTGCCAAAGAGTGTGAGCAGGAGTGCCTAAGAAATTGTTCTTGCACCGCATATTTGAGCACTGAATATGAAGGGCTTGTTGATTGCTTGATATGGTATGATGACTTGATGGACATTAAAGTGTACACGAGAGATTGGACAAGATCTCTACGTTCGTGTGAATGCGACCGTACTTTGTGGAGGCGGAGGAGCTTGTGGAAAAACGAGAGACACCCTGAATTGCAATTTTTCGATCTTGACACAATAGTCGCAGCAACAGACCACTTCTCTCATGTCAATGAACTTGGCCATGGTGGTTTTGGCTCTGTTTATAAGCTACCAAATGAACAGAAAGTTGCTGTGAAAAGATTGTCCAAAACTTCAGGACAAGGGATCGAAGAATTCAAAAATGAAGTTACACTTATAGCAAGACTTCAACACGGGAATCTTGTGAAACTTTTAGGCTGTTGTATAAAGGGAGAAGAAAGGATGTTAGTGCTAGAATACATGCCTAACAAAAGCTTGAACTCCTTTCTTTTTGACAACACAAGACGGTCCTTCTTGGATTGGGAAAAGCGTTTTGAAATTATCAACGGGATTGCTCGTGGGATTCTGTATCTTCACCAAGACTCAAGATTGAGGATCATCCATAGAGATCTGAAAACTAGCAATATTCTTCTAGATGCTGAGATGAACCCAAAAATTTCTGATTTTGGCATGGCTAGAATATTCCACGGAGATCAACTGCAAGATAAGACGAGCCGAATTGTTGGAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

329

Amino Acids

37.57

Weight (kDa)

6.76

Isoelectric Point (pI)

52.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 50 - 116 8.8e-18 PAN-like domain
Pkinase PF00069 167 - 323 3.2e-33 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 169 - 320 6.7e-33 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 543
AasI GACNNNNNNGTC 1 cut(s) 476
AccB1I GGYRCC 1 cut(s) 133
AciI CCGC 4 cut(s) 131, 176, 279, 415
AclWI GGATC 2 cut(s) 611, 860
AcoI YGGCCR 1 cut(s) 517
AcsI RAATTY 2 cut(s) 611, 912
AcuI CTGAAG 1 cut(s) 576
AfaI GTAC 2 cut(s) 356, 403
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 5 cut(s) 77, 616, 647, 736, 794
AluBI AGCT 3 cut(s) 423, 547, 732
AluI AGCT 3 cut(s) 423, 547, 732
Alw21I GWGCWC 1 cut(s) 293
Alw26I GTCTC 2 cut(s) 153, 433
AlwI GGATC 2 cut(s) 611, 860
AoxI GGCC 2 cut(s) 70, 517
ApeKI GCWGC 2 cut(s) 95, 482
ApoI RAATTY 2 cut(s) 611, 912
Asp700I GAANNNNTTC 1 cut(s) 268
AspS9I GGNCC 1 cut(s) 765
AsuHPI GGTGA 1 cut(s) 824
AvaII GGWCC 1 cut(s) 765
BalI TGGCCA 1 cut(s) 519
BanI GGYRCC 1 cut(s) 133
BauI CACGAG 2 cut(s) 358, 813
Bbv12I GWGCWC 1 cut(s) 293
BbvI GCAGC 2 cut(s) 82, 494
BccI CCATC 3 cut(s) 59, 149, 334
BcoDI GTCTC 2 cut(s) 153, 433
BfaI CTAG 4 cut(s) 710, 876, 890, 933
BglII AGATCT 2 cut(s) 374, 865
BisI GCNGC 3 cut(s) 96, 177, 483
BlsI GCNGC 3 cut(s) 97, 178, 484
Bme18I GGWCC 1 cut(s) 765
BmgT120I GGNCC 1 cut(s) 765
BmiI GGNNCC 1 cut(s) 135
BmsI GCATC 1 cut(s) 883
BpuEI CTTGAG 1 cut(s) 826
Bsa29I ATCGAT 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 520, 943
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse1I ACTGG 1 cut(s) 121
BseCI ATCGAT 1 cut(s) 203
BseDI CCNNGG 2 cut(s) 520, 943
BseGI GGATG 3 cut(s) 67, 705, 855
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 888
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 1 cut(s) 433
BseXI GCAGC 2 cut(s) 82, 494
BsgI GTGCAG 1 cut(s) 81
Bsh1285I CGRYCG 1 cut(s) 400
BshFI GGCC 2 cut(s) 72, 519
BshNI GGYRCC 1 cut(s) 133
BshVI ATCGAT 1 cut(s) 203
BsiEI CGRYCG 1 cut(s) 400
BsiHKAI GWGCWC 1 cut(s) 293
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 2 cut(s) 153, 433
BsmBI CGTCTC 1 cut(s) 153
BsmI GAATGC 1 cut(s) 398
BsnI GGCC 2 cut(s) 72, 519
Bsp1286I GDGCHC 1 cut(s) 293
Bsp1407I TGTACA 1 cut(s) 354
Bsp143I GATC 6 cut(s) 374, 463, 603, 852, 865, 949
Bsp19I CCATGG 1 cut(s) 520
BspACI CCGC 4 cut(s) 131, 176, 279, 415
BspANI GGCC 2 cut(s) 72, 519
BspCNI CTCAG 1 cut(s) 889
BspDI ATCGAT 1 cut(s) 203
BspLI GGNNCC 1 cut(s) 135
BspPI GGATC 2 cut(s) 611, 860
BspT107I GGYRCC 1 cut(s) 133
BsrGI TGTACA 1 cut(s) 354
BsrI ACTGG 1 cut(s) 121
BssECI CCNNGG 2 cut(s) 520, 943
BssMI GATC 6 cut(s) 374, 463, 603, 852, 865, 949
BssSI CACGAG 2 cut(s) 358, 813
BssT1I CCWWGG 1 cut(s) 520
Bst2BI CACGAG 2 cut(s) 358, 813
Bst4CI ACNGT 3 cut(s) 30, 401, 765
BstAUI TGTACA 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 2 cut(s) 260, 897
BstDSI CCRYGG 2 cut(s) 520, 943
BstF5I GGATG 3 cut(s) 67, 705, 855
BstKTI GATC 6 cut(s) 377, 466, 606, 855, 868, 952
BstMAI GTCTC 2 cut(s) 153, 433
BstMBI GATC 6 cut(s) 374, 463, 603, 852, 865, 949
BstMCI CGRYCG 1 cut(s) 400
BstNSI RCATGY 1 cut(s) 721
BstV1I GCAGC 2 cut(s) 82, 494
BstX2I RGATCY 2 cut(s) 374, 865
BstYI RGATCY 2 cut(s) 374, 865
Bsu15I ATCGAT 1 cut(s) 203
BsuRI GGCC 2 cut(s) 72, 519
BsuTUI ATCGAT 1 cut(s) 203
BtgI CCRYGG 2 cut(s) 520, 943
BtsCI GGATG 3 cut(s) 67, 705, 855
BtsIMutI CAGTG 1 cut(s) 291
Cac8I GCNNGC 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 765
ClaI ATCGAT 1 cut(s) 203
Csp6I GTAC 2 cut(s) 355, 402
CviAII CATG 5 cut(s) 57, 503, 521, 718, 928
CviQI GTAC 2 cut(s) 355, 402
DdeI CTNAG 2 cut(s) 260, 897
DpnI GATC 6 cut(s) 376, 465, 605, 854, 867, 951
DpnII GATC 6 cut(s) 374, 463, 603, 852, 865, 949
DrdI GACNNNNNNGTC 1 cut(s) 476
DseDI GACNNNNNNGTC 1 cut(s) 476
EaeI YGGCCR 1 cut(s) 517
EciI GGCGGA 1 cut(s) 430
Eco130I CCWWGG 1 cut(s) 520
Eco47I GGWCC 1 cut(s) 765
Eco57I CTGAAG 1 cut(s) 576
EcoRI GAATTC 1 cut(s) 611
EcoT14I CCWWGG 1 cut(s) 520
ErhI CCWWGG 1 cut(s) 520
Esp3I CGTCTC 1 cut(s) 153
FaeI CATG 5 cut(s) 60, 506, 524, 721, 931
FalI AAGNNNNNCTT 4 cut(s) 74, 106, 615, 647
FatI CATG 5 cut(s) 56, 502, 520, 717, 927
Fnu4HI GCNGC 3 cut(s) 96, 177, 483
FokI GGATG 3 cut(s) 74, 712, 842
Fsp4HI GCNGC 3 cut(s) 96, 177, 483
FspBI CTAG 4 cut(s) 710, 876, 890, 933
GluI GCNGC 3 cut(s) 96, 177, 483
HaeIII GGCC 2 cut(s) 72, 519
Hin1II CATG 5 cut(s) 60, 506, 524, 721, 931
HindIII AAGCTT 1 cut(s) 730
HinfI GANTC 3 cut(s) 655, 820, 839
HphI GGTGA 1 cut(s) 824
Hpy166II GTNNAC 2 cut(s) 355, 357
Hpy188I TCNGA 2 cut(s) 870, 919
Hpy188III TCNNGA 5 cut(s) 194, 467, 594, 843, 890
Hpy8I GTNNAC 2 cut(s) 355, 357
HpyAV CCTTC 5 cut(s) 76, 83, 166, 296, 778
HpyCH4III ACNGT 3 cut(s) 30, 401, 765
HpyCH4IV ACGT 1 cut(s) 382
HpyCH4V TGCA 5 cut(s) 13, 98, 276, 454, 958
HpyF3I CTNAG 2 cut(s) 260, 897
HpySE526I ACGT 1 cut(s) 382
Hsp92II CATG 5 cut(s) 60, 506, 524, 721, 931
Kzo9I GATC 6 cut(s) 374, 463, 603, 852, 865, 949
LmnI GCTCC 2 cut(s) 209, 420
LpnPI CCDG 5 cut(s) 102, 121, 236, 459, 579
Lsp1109I GCAGC 2 cut(s) 82, 494
LweI GCATC 1 cut(s) 883
MaeI CTAG 4 cut(s) 710, 876, 890, 933
MaeII ACGT 1 cut(s) 382
MaeIII GTNAC 2 cut(s) 112, 625
MalI GATC 6 cut(s) 376, 465, 605, 854, 867, 951
MboI GATC 6 cut(s) 374, 463, 603, 852, 865, 949
MboII GAAGA 4 cut(s) 620, 704, 821, 878
MflI RGATCY 2 cut(s) 374, 865
MhlI GDGCHC 1 cut(s) 293
MlsI TGGCCA 1 cut(s) 519
MluNI TGGCCA 1 cut(s) 519
MlyI GAGTC 1 cut(s) 833
MmeI TCCRAC 1 cut(s) 961
MnlI CCTC 3 cut(s) 405, 411, 843
Mox20I TGGCCA 1 cut(s) 519
MroXI GAANNNNTTC 1 cut(s) 268
MscI TGGCCA 1 cut(s) 519
MseI TTAA 2 cut(s) 186, 348
MslI CAYNNNNRTG 2 cut(s) 350, 507
Msp20I TGGCCA 1 cut(s) 519
Mva1269I GAATGC 1 cut(s) 398
NcoI CCATGG 1 cut(s) 520
NdeII GATC 6 cut(s) 374, 463, 603, 852, 865, 949
NlaIII CATG 5 cut(s) 60, 506, 524, 721, 931
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 112
NspI RCATGY 1 cut(s) 721
PctI GAATGC 1 cut(s) 398
PdmI GAANNNNTTC 1 cut(s) 268
PfeI GAWTC 2 cut(s) 655, 820
PkrI GCNGC 3 cut(s) 97, 178, 484
PleI GAGTC 1 cut(s) 833
PpsI GAGTC 1 cut(s) 833
PsiI TTATAA 1 cut(s) 543
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 1 cut(s) 765
PsuI RGATCY 2 cut(s) 374, 865
RsaI GTAC 2 cut(s) 356, 403
RsaNI GTAC 2 cut(s) 355, 402
RseI CAYNNNNRTG 2 cut(s) 350, 507
SaqAI TTAA 2 cut(s) 186, 348
SatI GCNGC 3 cut(s) 96, 177, 483
Sau3AI GATC 6 cut(s) 374, 463, 603, 852, 865, 949
Sau96I GGNCC 1 cut(s) 765
SchI GAGTC 1 cut(s) 833
SduI GDGCHC 1 cut(s) 293
SetI ASST 6 cut(s) 87, 229, 385, 425, 549, 734
SfaNI GCATC 1 cut(s) 883
SinI GGWCC 1 cut(s) 765
SmiMI CAYNNNNRTG 2 cut(s) 350, 507
SmlI CTYRAG 1 cut(s) 841
SmoI CTYRAG 1 cut(s) 841
SsiI CCGC 4 cut(s) 131, 176, 279, 415
SspI AATATT 2 cut(s) 883, 939
SspMI CTAG 4 cut(s) 710, 876, 890, 933
StyI CCWWGG 1 cut(s) 520
TaaI ACNGT 3 cut(s) 30, 401, 765
TaiI ACGT 1 cut(s) 385
TaqI TCGA 3 cut(s) 203, 462, 606
TatI WGTACW 1 cut(s) 354
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 2 cut(s) 655, 820
Tru1I TTAA 2 cut(s) 186, 348
Tru9I TTAA 2 cut(s) 186, 348
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 2 cut(s) 95, 482
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 5 cut(s) 315, 525, 570, 636, 917
TspGWI ACGGA 1 cut(s) 960
TspRI CASTG 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 765
XapI RAATTY 2 cut(s) 611, 912
XbaI TCTAGA 1 cut(s) 889
XceI RCATGY 1 cut(s) 721
XcmI CCANNNNNNNNNTGG 1 cut(s) 527
XmnI GAANNNNTTC 1 cut(s) 268
XspI CTAG 4 cut(s) 710, 876, 890, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.