Rh5CG048000

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000112
Physical Location & Seq
Forward (+)
3373017 .. 3373411
395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG048000.1

Sequence Viewer

Length: 321 bp
ATGAACTTGATAGGACGTATTTGGGAGCTCTGGGGAGAAGGCAGAGCCTTAGATATTGTTGATTCGACACTAAAGTCATATCAGCCTAATGAAGTCATGAGATGCATACATGTTGCGCTCTTGTGTGTACAAGAAGATTCAAAGGGCCGACCTGCCATGTCAGCCATTGTTTTCATGTTGAGTGGTGAAGCATCTCCTCCATTGCCTAAGCATCCGGCATTTGTTTACAGAAGAGATTCAGGCGCTGATGTTGATCCATTACATGCAAACGGATCTGATTCTATAAATGACTTGACAATAACTACAATGAAAGCTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

106

Amino Acids

11.69

Weight (kDa)

5.84

Isoelectric Point (pI)

33.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 73
Acc36I ACCTGC 1 cut(s) 160
AclWI GGATC 2 cut(s) 248, 280
AfaI GTAC 1 cut(s) 129
AflIII ACRYGT 1 cut(s) 109
AgsI TTSAA 1 cut(s) 141
AluBI AGCT 2 cut(s) 28, 314
AluI AGCT 2 cut(s) 28, 314
Alw21I GWGCWC 1 cut(s) 30
AlwI GGATC 2 cut(s) 248, 280
AlwNI CAGNNNCTG 1 cut(s) 245
AoxI GGCC 1 cut(s) 145
Asp700I GAANNNNTTC 1 cut(s) 235
AspLEI GCGC 2 cut(s) 118, 245
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 197
BanII GRGCYC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 30
BfoI RGCGCY 1 cut(s) 246
BfuAI ACCTGC 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 145
BmsI GCATC 3 cut(s) 92, 200, 220
Bpu10I CCTNAGC 1 cut(s) 207
BsaBI GATNNNNATC 1 cut(s) 252
Bse3DI GCAATG 1 cut(s) 200
Bse8I GATNNNNATC 1 cut(s) 252
BseGI GGATG 1 cut(s) 211
BseJI GATNNNNATC 1 cut(s) 252
BseMI GCAATG 1 cut(s) 200
BseRI GAGGAG 1 cut(s) 186
BshFI GGCC 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 30
BsiSI CCGG 1 cut(s) 215
BsnI GGCC 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 30
Bsp1407I TGTACA 1 cut(s) 127
Bsp143I GATC 2 cut(s) 253, 272
BspANI GGCC 1 cut(s) 147
BspHI TCATGA 1 cut(s) 96
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 2 cut(s) 248, 280
BsrDI GCAATG 1 cut(s) 200
BsrGI TGTACA 1 cut(s) 127
BssMI GATC 2 cut(s) 253, 272
Bst6I CTCTTC 1 cut(s) 226
BstAUI TGTACA 1 cut(s) 127
BstDEI CTNAG 2 cut(s) 49, 207
BstF5I GGATG 1 cut(s) 211
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 2 cut(s) 118, 245
BstKTI GATC 2 cut(s) 256, 275
BstMBI GATC 2 cut(s) 253, 272
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNSI RCATGY 2 cut(s) 113, 266
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
BsuRI GGCC 1 cut(s) 147
BtsCI GGATG 1 cut(s) 211
BveI ACCTGC 1 cut(s) 160
CaiI CAGNNNCTG 1 cut(s) 245
CciI TCATGA 1 cut(s) 96
CfoI GCGC 2 cut(s) 118, 245
Cfr13I GGNCC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 128
CviAII CATG 5 cut(s) 97, 110, 157, 175, 263
CviJI RGCY 6 cut(s) 28, 47, 85, 147, 164, 314
CviKI_1 RGCY 6 cut(s) 28, 47, 85, 147, 164, 314
CviQI GTAC 1 cut(s) 128
DdeI CTNAG 2 cut(s) 49, 207
DpnI GATC 2 cut(s) 255, 274
DpnII GATC 2 cut(s) 253, 272
DrdI GACNNNNNNGTC 1 cut(s) 73
DseDI GACNNNNNNGTC 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 226
Ecl136II GAGCTC 1 cut(s) 28
Eco24I GRGCYC 1 cut(s) 30
Eco53kI GAGCTC 1 cut(s) 28
EcoICRI GAGCTC 1 cut(s) 28
EcoT22I ATGCAT 1 cut(s) 107
EcoT38I GRGCYC 1 cut(s) 30
FaeI CATG 5 cut(s) 100, 113, 160, 178, 266
FaiI YATR 8 cut(s) 79, 98, 107, 111, 158, 176, 264, 284
FatI CATG 5 cut(s) 96, 109, 156, 174, 262
FokI GGATG 1 cut(s) 198
FriOI GRGCYC 1 cut(s) 30
GlaI GCGC 2 cut(s) 117, 244
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 1 cut(s) 147
HapII CCGG 1 cut(s) 215
HhaI GCGC 2 cut(s) 118, 245
Hin1II CATG 5 cut(s) 100, 113, 160, 178, 266
Hin6I GCGC 2 cut(s) 116, 243
HinP1I GCGC 2 cut(s) 116, 243
HinfI GANTC 4 cut(s) 62, 137, 236, 278
HpaII CCGG 1 cut(s) 215
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 2 cut(s) 128, 226
Hpy188I TCNGA 1 cut(s) 277
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 2 cut(s) 128, 226
HpyAV CCTTC 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 2 cut(s) 105, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 2 cut(s) 49, 207
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 5 cut(s) 100, 113, 160, 178, 266
HspAI GCGC 2 cut(s) 116, 243
Kzo9I GATC 2 cut(s) 253, 272
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 4 cut(s) 16, 165, 225, 228
LweI GCATC 3 cut(s) 92, 200, 220
MaeII ACGT 1 cut(s) 16
MalI GATC 2 cut(s) 255, 274
MboI GATC 2 cut(s) 253, 272
MboII GAAGA 2 cut(s) 146, 243
MflI RGATCY 1 cut(s) 272
MhlI GDGCHC 1 cut(s) 30
MnlI CCTC 1 cut(s) 207
Mph1103I ATGCAT 1 cut(s) 107
MroXI GAANNNNTTC 1 cut(s) 235
MspI CCGG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 2 cut(s) 253, 272
NlaIII CATG 5 cut(s) 100, 113, 160, 178, 266
NsiI ATGCAT 1 cut(s) 107
NspI RCATGY 2 cut(s) 113, 266
PagI TCATGA 1 cut(s) 96
PciI ACATGT 1 cut(s) 109
PdmI GAANNNNTTC 1 cut(s) 235
PfeI GAWTC 4 cut(s) 62, 137, 236, 278
PscI ACATGT 1 cut(s) 109
Psp124BI GAGCTC 1 cut(s) 30
PspPI GGNCC 1 cut(s) 145
PstNI CAGNNNCTG 1 cut(s) 245
PsuI RGATCY 1 cut(s) 272
RsaI GTAC 1 cut(s) 129
RsaNI GTAC 1 cut(s) 128
SacI GAGCTC 1 cut(s) 30
Sau3AI GATC 2 cut(s) 253, 272
Sau96I GGNCC 1 cut(s) 145
SduI GDGCHC 1 cut(s) 30
SetI ASST 4 cut(s) 19, 30, 154, 316
SfaNI GCATC 3 cut(s) 92, 200, 220
SstI GAGCTC 1 cut(s) 30
TaiI ACGT 1 cut(s) 19
TaqI TCGA 2 cut(s) 65, 316
TatI WGTACW 1 cut(s) 127
TfiI GAWTC 4 cut(s) 62, 137, 236, 278
TspDTI ATGAA 3 cut(s) 17, 105, 163
TspGWI ACGGA 1 cut(s) 285
XceI RCATGY 2 cut(s) 113, 266
XmnI GAANNNNTTC 1 cut(s) 235
Zsp2I ATGCAT 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.