Rh2CG341600

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000112
Physical Location & Seq
Forward (+)
45845918 .. 45847481
1564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG341600.1

Sequence Viewer

Length: 465 bp
ATGTATCAGCATTGCCTATTTGTATGGGTTGCAAACAGGAACAATCCCATCAGTGATACCTCTGGTGTCCTCACAATAAGCACGTATGAAAGTGGGGATATTTGGGAAACTGGGCTAGAATGGAATATAACATCTTGGAAGTCACAAGATGACCCTGAAGCCGGGGACTATACCGATAGGCTATATTCAAATCAAACTGCAATCCCTGAATTTTTTATATACAAAGGATATGAACTGAAGTCTTTAAATGATTGGAATCAGAGAAATGGGTCAGATGGATGTGTGAAGCACACTGCAGTGGGACGAGATCTTTATGTTCATGTAGATCATATGGAGTCAGCTGAGAATGCCAGAAAATCAAAAGGCTTCTTTGGAAGGGGGGTGACGCTGACTGTTCCAATATTGTCTGTTCTTCTGCCATTGGTACTGGTCATTGGCTTAAGAGGAAAACAGAAGATTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

154

Amino Acids

17.42

Weight (kDa)

5.76

Isoelectric Point (pI)

16.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 2 cut(s) 177, 257
AfaI GTAC 1 cut(s) 426
AfiI CCNNNNNNNGG 1 cut(s) 161
AflII CTTAAG 1 cut(s) 439
AgsI TTSAA 1 cut(s) 189
AleI CACNNNNGTG 1 cut(s) 296
AluBI AGCT 1 cut(s) 341
AluI AGCT 1 cut(s) 341
ApoI RAATTY 1 cut(s) 209
AsuC2I CCSGG 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 394
BccI CCATC 2 cut(s) 56, 269
BcnI CCSGG 1 cut(s) 163
BfaI CTAG 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 294
BfrI CTTAAG 1 cut(s) 439
BglII AGATCT 1 cut(s) 307
Bme1390I CCNGG 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 163
BmrI ACTGGG 1 cut(s) 120
BmuI ACTGGG 1 cut(s) 120
BpuMI CCSGG 1 cut(s) 163
BsaAI YACGTR 1 cut(s) 84
BsaBI GATNNNNATC 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse1I ACTGG 2 cut(s) 115, 432
Bse3DI GCAATG 1 cut(s) 10
Bse8I GATNNNNATC 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 1 cut(s) 284
BseJI GATNNNNATC 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMI GCAATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 2 cut(s) 115, 432
BsiSI CCGG 1 cut(s) 162
BslFI GGGAC 2 cut(s) 179, 315
BslI CCNNNNNNNGG 1 cut(s) 161
BsmFI GGGAC 2 cut(s) 179, 315
BsmI GAATGC 1 cut(s) 352
Bsp143I GATC 2 cut(s) 307, 325
BspCNI CTCAG 1 cut(s) 334
BspMAI CTGCAG 1 cut(s) 298
BspTI CTTAAG 1 cut(s) 439
BsrDI GCAATG 1 cut(s) 10
BsrI ACTGG 2 cut(s) 115, 432
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 2 cut(s) 307, 325
Bst4CI ACNGT 1 cut(s) 394
BstAFI CTTAAG 1 cut(s) 439
BstBAI YACGTR 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 342
BstF5I GGATG 1 cut(s) 284
BstKTI GATC 2 cut(s) 310, 328
BstMBI GATC 2 cut(s) 307, 325
BstMWI GCNNNNNNNGC 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 161
BstSFI CTRYAG 1 cut(s) 294
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
BtsCI GGATG 1 cut(s) 284
BtsI GCAGTG 2 cut(s) 291, 303
BtsIMutI CAGTG 3 cut(s) 58, 291, 303
CseI GACGC 1 cut(s) 394
Csp6I GTAC 1 cut(s) 425
CviAII CATG 1 cut(s) 320
CviJI RGCY 6 cut(s) 115, 161, 181, 341, 366, 438
CviKI_1 RGCY 6 cut(s) 115, 161, 181, 341, 366, 438
CviQI GTAC 1 cut(s) 425
DdeI CTNAG 1 cut(s) 342
DpnI GATC 2 cut(s) 309, 327
DpnII GATC 2 cut(s) 307, 325
DraI TTTAAA 1 cut(s) 246
Eco57I CTGAAG 2 cut(s) 177, 257
FaeI CATG 1 cut(s) 323
FaqI GGGAC 2 cut(s) 179, 315
FatI CATG 1 cut(s) 319
FauNDI CATATG 1 cut(s) 330
FokI GGATG 1 cut(s) 291
FspBI CTAG 1 cut(s) 116
HapII CCGG 1 cut(s) 162
HgaI GACGC 1 cut(s) 394
Hin1II CATG 1 cut(s) 323
HinfI GANTC 2 cut(s) 256, 335
HpaII CCGG 1 cut(s) 162
HphI GGTGA 1 cut(s) 394
Hpy188I TCNGA 2 cut(s) 261, 274
HpyAV CCTTC 1 cut(s) 369
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4IV ACGT 1 cut(s) 83
HpyCH4V TGCA 3 cut(s) 32, 200, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 347
HpyF3I CTNAG 1 cut(s) 342
HpySE526I ACGT 1 cut(s) 83
Hsp92II CATG 1 cut(s) 323
Kzo9I GATC 2 cut(s) 307, 325
LpnPI CCDG 8 cut(s) 22, 48, 96, 168, 175, 219, 364, 413
MaeI CTAG 1 cut(s) 116
MaeII ACGT 1 cut(s) 83
MaeIII GTNAC 2 cut(s) 141, 382
MalI GATC 2 cut(s) 309, 327
MboI GATC 2 cut(s) 307, 325
MboII GAAGA 1 cut(s) 404
MflI RGATCY 1 cut(s) 307
MluCI AATT 1 cut(s) 209
MlyI GAGTC 1 cut(s) 344
MnlI CCTC 3 cut(s) 70, 80, 437
MseI TTAA 2 cut(s) 245, 440
MslI CAYNNNNRTG 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 341
MspCI CTTAAG 1 cut(s) 439
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 163
Mva1269I GAATGC 1 cut(s) 352
MwoI GCNNNNNNNGC 1 cut(s) 347
NciI CCSGG 1 cut(s) 163
NdeI CATATG 1 cut(s) 330
NdeII GATC 2 cut(s) 307, 325
NlaIII CATG 1 cut(s) 323
NmuCI GTSAC 2 cut(s) 141, 382
OliI CACNNNNGTG 1 cut(s) 296
PctI GAATGC 1 cut(s) 352
PfeI GAWTC 1 cut(s) 256
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
Ppu21I YACGTR 1 cut(s) 84
PstI CTGCAG 1 cut(s) 298
PsuI RGATCY 1 cut(s) 307
PvuII CAGCTG 1 cut(s) 341
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
RseI CAYNNNNRTG 1 cut(s) 296
SaqAI TTAA 2 cut(s) 245, 440
Sau3AI GATC 2 cut(s) 307, 325
SchI GAGTC 1 cut(s) 344
ScrFI CCNGG 1 cut(s) 163
SetI ASST 3 cut(s) 62, 86, 343
SfcI CTRYAG 1 cut(s) 294
SmiMI CAYNNNNRTG 1 cut(s) 296
SmlI CTYRAG 1 cut(s) 439
SmoI CTYRAG 1 cut(s) 439
Sse9I AATT 1 cut(s) 209
SspI AATATT 1 cut(s) 402
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 394
TaiI ACGT 1 cut(s) 86
TasI AATT 1 cut(s) 209
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 2 cut(s) 245, 440
Tru9I TTAA 2 cut(s) 245, 440
TscAI CASTG 3 cut(s) 58, 298, 303
TseFI GTSAC 2 cut(s) 141, 382
Tsp45I GTSAC 2 cut(s) 141, 382
TspDTI ATGAA 3 cut(s) 102, 246, 308
TspRI CASTG 3 cut(s) 58, 298, 303
Vha464I CTTAAG 1 cut(s) 439
XapI RAATTY 1 cut(s) 209
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.