Rmu_sc0025106.1_g000012

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025106.1
OG0000112
Physical Location & Seq
Reverse (-)
15452 .. 16871
1420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025106.1_g000012.1.cds

Sequence Viewer

Length: 1014 bp
atgataggcaaagactcagtggattcgaatgaacttgagattactggacaccccgaattttttgatctcaacacacttagagtagccacagaaaacttttctgatgccaacaaacttggccaaggcggttttggcagtgtttgtaagggtgagttaccaaatcacgagaaggttgctgtcaaaagattgatcaggactagacacgggattgaagaatttagaaatgaagttgcactgatagccagacttcaacacaggaatctcgtgaaacttgtaggctactgtagaaatagagaagaaaggatgctagtcttggaatacatgccgaacaagagcttggactcatttctttttgataacacaagaaggtccttagaatggcagaagcgctttgagattatcaacggcgttgcttgtggaattttgtatcttcaccaagattcgagagtgaggatcatccatagggatctcaaaactagcaatgttcttctagacgccgacatgaaccccaaaatttcatatttcagcatggcaagactaatccatgggaaccaactgcagaatagaacgagcaaaaatgctggaacatttggctatatggcaccagaatatgcaaacttcggacaattttcaacaaaatctgatgtctatagtttcgggatcatattattggagatcgtaggaggcaagaagagcagtagttcttattgggattccacatacttggtacgacatgcttgggagctgtggaaagaagatagagccttggaattagtggatgcatcactacagtcctatcagccagatgaagtccgtagatgtattcaagttgggttgttgtgtgtggaagatgattcagagaaacgaccggccatgtcagatgttattttcatgttatgtggtgaggcatctcttccttctcctatacagcctgtatttggctttaacataggttccagaattgctcttgattcgtcaaataatgactcgagtataactgaaatggaagggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

337

Amino Acids

38.28

Weight (kDa)

5.96

Isoelectric Point (pI)

52.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 601
AciI CCGC 1 cut(s) 126
AclWI GGATC 3 cut(s) 461, 474, 668
AcoI YGGCCR 2 cut(s) 118, 870
AcsI RAATTY 4 cut(s) 56, 215, 420, 513
AcyI GRCGYC 1 cut(s) 495
AfaI GTAC 1 cut(s) 729
AfeI AGCGCT 1 cut(s) 389
AfiI CCNNNNNNNGG 2 cut(s) 378, 938
AgsI TTSAA 4 cut(s) 212, 251, 633, 827
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AluBI AGCT 2 cut(s) 336, 745
AluI AGCT 2 cut(s) 336, 745
AlwI GGATC 3 cut(s) 461, 474, 668
Ama87I CYCGRG 1 cut(s) 988
Aor51HI AGCGCT 1 cut(s) 389
AoxI GGCC 2 cut(s) 118, 870
ApoI RAATTY 4 cut(s) 56, 215, 420, 513
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 1 cut(s) 369
AsuHPI GGTGA 3 cut(s) 161, 425, 914
AsuII TTCGAA 1 cut(s) 26
AvaI CYCGRG 1 cut(s) 988
AvaII GGWCC 1 cut(s) 369
BalI TGGCCA 1 cut(s) 120
BanI GGYRCC 1 cut(s) 601
BauI CACGAG 2 cut(s) 164, 263
BceAI ACGGC 1 cut(s) 421
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BclI TGATCA 1 cut(s) 189
BfaI CTAG 4 cut(s) 198, 308, 477, 491
BfmI CTRYAG 4 cut(s) 283, 557, 649, 788
BfoI RGCGCY 1 cut(s) 391
Bme18I GGWCC 1 cut(s) 369
BmeT110I CYCGRG 1 cut(s) 988
BmgT120I GGNCC 1 cut(s) 369
BmiI GGNNCC 3 cut(s) 551, 603, 955
BmsI GCATC 5 cut(s) 94, 294, 769, 791, 917
Bpu14I TTCGAA 1 cut(s) 26
BpuEI CTTGAG 1 cut(s) 56
BsaHI GRCGYC 1 cut(s) 495
BsaJI CCNNGG 3 cut(s) 121, 544, 765
Bsc4I CCNNNNNNNGG 2 cut(s) 378, 938
Bse118I RCCGGY 1 cut(s) 868
Bse1I ACTGG 1 cut(s) 49
Bse3DI GCAATG 1 cut(s) 487
BseDI CCNNGG 3 cut(s) 121, 544, 765
BseGI GGATG 3 cut(s) 309, 456, 784
BseLI CCNNNNNNNGG 2 cut(s) 378, 938
BseMI GCAATG 1 cut(s) 487
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 49
Bsh1285I CGRYCG 1 cut(s) 869
BshFI GGCC 2 cut(s) 120, 872
BshNI GGYRCC 1 cut(s) 601
BsiEI CGRYCG 1 cut(s) 869
BsiHKCI CYCGRG 1 cut(s) 988
BsiSI CCGG 1 cut(s) 869
BslI CCNNNNNNNGG 2 cut(s) 378, 938
BsnI GGCC 2 cut(s) 120, 872
BsoBI CYCGRG 1 cut(s) 988
Bsp119I TTCGAA 1 cut(s) 26
Bsp143I GATC 6 cut(s) 64, 189, 453, 466, 660, 675
Bsp19I CCATGG 1 cut(s) 544
BspACI CCGC 1 cut(s) 126
BspANI GGCC 2 cut(s) 120, 872
BspCNI CTCAG 1 cut(s) 29
BspLI GGNNCC 3 cut(s) 551, 603, 955
BspMAI CTGCAG 1 cut(s) 561
BspPI GGATC 3 cut(s) 461, 474, 668
BspQI GCTCTTC 1 cut(s) 686
BspT104I TTCGAA 1 cut(s) 26
BspT107I GGYRCC 1 cut(s) 601
BsrDI GCAATG 1 cut(s) 487
BsrFI RCCGGY 1 cut(s) 868
BsrI ACTGG 1 cut(s) 49
BssAI RCCGGY 1 cut(s) 868
BssECI CCNNGG 3 cut(s) 121, 544, 765
BssMI GATC 6 cut(s) 64, 189, 453, 466, 660, 675
BssNI GRCGYC 1 cut(s) 495
BssSI CACGAG 2 cut(s) 164, 263
BssT1I CCWWGG 3 cut(s) 121, 544, 765
Bst2BI CACGAG 2 cut(s) 164, 263
Bst4CI ACNGT 2 cut(s) 284, 792
Bst6I CTCTTC 2 cut(s) 686, 918
BstACI GRCGYC 1 cut(s) 495
BstBI TTCGAA 1 cut(s) 26
BstDEI CTNAG 3 cut(s) 16, 77, 373
BstDSI CCRYGG 1 cut(s) 544
BstF5I GGATG 3 cut(s) 309, 456, 784
BstH2I RGCGCY 1 cut(s) 391
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 6 cut(s) 67, 192, 456, 469, 663, 678
BstMBI GATC 6 cut(s) 64, 189, 453, 466, 660, 675
BstMCI CGRYCG 1 cut(s) 869
BstMWI GCNNNNNNNGC 3 cut(s) 132, 239, 693
BstNSI RCATGY 2 cut(s) 325, 737
BstSFI CTRYAG 4 cut(s) 283, 557, 649, 788
BstX2I RGATCY 1 cut(s) 466
BstXI CCANNNNNNTGG 1 cut(s) 724
BstYI RGATCY 1 cut(s) 466
BsuRI GGCC 2 cut(s) 120, 872
BtgI CCRYGG 1 cut(s) 544
BtsCI GGATG 3 cut(s) 309, 456, 784
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 3 cut(s) 24, 142, 233
CfoI GCGC 1 cut(s) 390
Cfr10I RCCGGY 1 cut(s) 868
Cfr13I GGNCC 1 cut(s) 369
CseI GACGC 1 cut(s) 503
Csp6I GTAC 1 cut(s) 728
CviAII CATG 7 cut(s) 322, 502, 529, 545, 734, 874, 892
CviQI GTAC 1 cut(s) 728
DdeI CTNAG 3 cut(s) 16, 77, 373
DpnI GATC 6 cut(s) 66, 191, 455, 468, 662, 677
DpnII GATC 6 cut(s) 64, 189, 453, 466, 660, 675
EaeI YGGCCR 2 cut(s) 118, 870
Eam1104I CTCTTC 2 cut(s) 686, 918
EarI CTCTTC 2 cut(s) 686, 918
Eco130I CCWWGG 3 cut(s) 121, 544, 765
Eco47I GGWCC 1 cut(s) 369
Eco47III AGCGCT 1 cut(s) 389
Eco88I CYCGRG 1 cut(s) 988
EcoO109I RGGNCCY 1 cut(s) 369
EcoT14I CCWWGG 3 cut(s) 121, 544, 765
EcoT22I ATGCAT 1 cut(s) 784
ErhI CCWWGG 3 cut(s) 121, 544, 765
FaeI CATG 7 cut(s) 325, 505, 532, 548, 737, 877, 895
FatI CATG 7 cut(s) 321, 501, 528, 544, 733, 873, 891
FbaI TGATCA 1 cut(s) 189
FokI GGATG 3 cut(s) 316, 443, 791
FspBI CTAG 4 cut(s) 198, 308, 477, 491
GlaI GCGC 1 cut(s) 389
HaeII RGCGCY 1 cut(s) 391
HaeIII GGCC 2 cut(s) 120, 872
HapII CCGG 1 cut(s) 869
HgaI GACGC 1 cut(s) 503
HhaI GCGC 1 cut(s) 390
Hin1I GRCGYC 1 cut(s) 495
Hin1II CATG 7 cut(s) 325, 505, 532, 548, 737, 877, 895
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HinfI GANTC 9 cut(s) 14, 23, 259, 341, 440, 713, 854, 971, 986
HpaII CCGG 1 cut(s) 869
HphI GGTGA 3 cut(s) 161, 425, 914
Hpy188I TCNGA 5 cut(s) 103, 623, 643, 859, 880
Hpy188III TCNNGA 8 cut(s) 164, 193, 265, 444, 491, 658, 957, 968
HpyAV CCTTC 4 cut(s) 163, 360, 927, 1001
HpyCH4III ACNGT 2 cut(s) 284, 792
HpyCH4V TGCA 4 cut(s) 233, 559, 614, 782
HpyF10VI GCNNNNNNNGC 3 cut(s) 132, 239, 693
HpyF3I CTNAG 3 cut(s) 16, 77, 373
Hsp92I GRCGYC 1 cut(s) 495
Hsp92II CATG 7 cut(s) 325, 505, 532, 548, 737, 877, 895
HspAI GCGC 1 cut(s) 388
Ksp22I TGATCA 1 cut(s) 189
Kzo9I GATC 6 cut(s) 64, 189, 453, 466, 660, 675
LguI GCTCTTC 1 cut(s) 686
LmnI GCTCC 1 cut(s) 742
LweI GCATC 5 cut(s) 94, 294, 769, 791, 917
MaeI CTAG 4 cut(s) 198, 308, 477, 491
MaeIII GTNAC 1 cut(s) 153
MalI GATC 6 cut(s) 66, 191, 455, 468, 662, 677
MboI GATC 6 cut(s) 64, 189, 453, 466, 660, 675
MboII GAAGA 8 cut(s) 224, 308, 422, 479, 703, 767, 860, 905
MflI RGATCY 1 cut(s) 466
MlsI TGGCCA 1 cut(s) 120
MluCI AATT 7 cut(s) 56, 215, 420, 513, 626, 770, 960
MluNI TGGCCA 1 cut(s) 120
MlyI GAGTC 3 cut(s) 8, 335, 980
MnlI CCTC 3 cut(s) 444, 677, 898
Mox20I TGGCCA 1 cut(s) 120
Mph1103I ATGCAT 1 cut(s) 784
MscI TGGCCA 1 cut(s) 120
MseI TTAA 1 cut(s) 945
Msp20I TGGCCA 1 cut(s) 120
MspI CCGG 1 cut(s) 869
MwoI GCNNNNNNNGC 3 cut(s) 132, 239, 693
NcoI CCATGG 1 cut(s) 544
NdeII GATC 6 cut(s) 64, 189, 453, 466, 660, 675
NlaIII CATG 7 cut(s) 325, 505, 532, 548, 737, 877, 895
NlaIV GGNNCC 3 cut(s) 551, 603, 955
NsiI ATGCAT 1 cut(s) 784
NspI RCATGY 2 cut(s) 325, 737
NspV TTCGAA 1 cut(s) 26
PaeR7I CTCGAG 1 cut(s) 988
PciSI GCTCTTC 1 cut(s) 686
PfeI GAWTC 6 cut(s) 23, 259, 440, 713, 854, 971
PleI GAGTC 3 cut(s) 8, 335, 980
PpsI GAGTC 3 cut(s) 8, 335, 980
PpuMI RGGWCCY 1 cut(s) 369
Psp5II RGGWCCY 1 cut(s) 369
PspN4I GGNNCC 3 cut(s) 551, 603, 955
PspPI GGNCC 1 cut(s) 369
PspPPI RGGWCCY 1 cut(s) 369
PspXI VCTCGAGB 1 cut(s) 988
PstI CTGCAG 1 cut(s) 561
PsuI RGATCY 1 cut(s) 466
RsaI GTAC 1 cut(s) 729
RsaNI GTAC 1 cut(s) 728
SapI GCTCTTC 1 cut(s) 686
SaqAI TTAA 1 cut(s) 945
Sau3AI GATC 6 cut(s) 64, 189, 453, 466, 660, 675
Sau96I GGNCC 1 cut(s) 369
SchI GAGTC 3 cut(s) 8, 335, 980
SetI ASST 5 cut(s) 174, 338, 371, 747, 955
SfaNI GCATC 5 cut(s) 94, 294, 769, 791, 917
SfcI CTRYAG 4 cut(s) 283, 557, 649, 788
Sfr274I CTCGAG 1 cut(s) 988
SfuI TTCGAA 1 cut(s) 26
SinI GGWCC 1 cut(s) 369
SlaI CTCGAG 1 cut(s) 988
SmlI CTYRAG 2 cut(s) 35, 988
SmoI CTYRAG 2 cut(s) 35, 988
Sse9I AATT 7 cut(s) 56, 215, 420, 513, 626, 770, 960
SsiI CCGC 1 cut(s) 126
SspMI CTAG 4 cut(s) 198, 308, 477, 491
StyI CCWWGG 3 cut(s) 121, 544, 765
TaaI ACNGT 2 cut(s) 284, 792
TaqI TCGA 3 cut(s) 26, 443, 989
TasI AATT 7 cut(s) 56, 215, 420, 513, 626, 770, 960
TfiI GAWTC 6 cut(s) 23, 259, 440, 713, 854, 971
Tru1I TTAA 1 cut(s) 945
Tru9I TTAA 1 cut(s) 945
TscAI CASTG 3 cut(s) 24, 142, 240
TspDTI ATGAA 6 cut(s) 45, 240, 507, 518, 822, 880
TspGWI ACGGA 1 cut(s) 803
TspRI CASTG 3 cut(s) 24, 142, 240
VpaK11BI GGWCC 1 cut(s) 369
XapI RAATTY 4 cut(s) 56, 215, 420, 513
XbaI TCTAGA 1 cut(s) 490
XceI RCATGY 2 cut(s) 325, 737
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
XhoI CTCGAG 1 cut(s) 988
XspI CTAG 4 cut(s) 198, 308, 477, 491
Zsp2I ATGCAT 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.