Rmu_sc0020478.1_g000003

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020478.1
OG0000112
Physical Location & Seq
Forward (+)
19228 .. 20522
1295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020478.1_g000003.1.cds

Sequence Viewer

Length: 987 bp
atgaggtacgtcttttacggctccggcatttacagcctgcctttgtgtgccttaaatacccttttacggcacacattgtgggccgtaaaagaccgtttttggtgtagtgatattgctgtgaaaagactgtccaaaacttcggggcaagggattgaagaattcaaaaatgaagatgttcttatagaaaggcttcaacacaggaaccttgtgaaacttttgggttgttgcatagagggagaagaaaagatgttggtccttgaatacttgtcgaacaaaagcttggacttctttctttttgatcactcaagaaggtcctctttggattggaaaaagcgctttgaaattatcaatgggattgctcgtgggattctttatcttcaccgggactcgagagttagaattatacatagggatctgaaaaccagcaatattcttctagatgctgagataaacccaaaattttcagattttggcatggcaagaatattttatggggacccattgcagaataagacagccagagttgttggaacatatgggtatatgttaccagaatatgcagtttttggaagatattcaacaaaatcagatgtttttagcttcgggatcataatattggagatcgtaagtggcaagaaaaactctggttcttataaggaggatcattccatcaacttgatagaaaatgtttggcagatgtggggtgaagacagagctttagaagttcttgattcatcactagagttatatcaacctgatgaagtcttgagatgcattcaagttgggctcttatgtgtgcaagaagattcaaaggaccgacctaccatgtcagatgctgttttcatgttgagtggtgaagcatctctttcaactcctaagcagcctgcatttgtttttagaaaaagtgcatgcagtaatgttccatcccttgcaaatggattatgttcaataaatgacttaacaataaccaatgtggatgttcgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

328

Amino Acids

37.45

Weight (kDa)

7.0

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 654
AclWI GGATC 3 cut(s) 420, 614, 669
AcsI RAATTY 2 cut(s) 158, 458
AdeI CACNNNGTG 1 cut(s) 78
AfaI GTAC 1 cut(s) 8
AfeI AGCGCT 1 cut(s) 335
AfiI CCNNNNNNNGG 1 cut(s) 66
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AluBI AGCT 3 cut(s) 279, 600, 716
AluI AGCT 3 cut(s) 279, 600, 716
AlwI GGATC 3 cut(s) 420, 614, 669
AlwNI CAGNNNCTG 1 cut(s) 836
Ama87I CYCGRG 1 cut(s) 388
Aor51HI AGCGCT 1 cut(s) 335
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 880
ApoI RAATTY 2 cut(s) 158, 458
Asp700I GAANNNNTTC 3 cut(s) 174, 189, 574
AspLEI GCGC 1 cut(s) 336
AspS9I GGNCC 5 cut(s) 81, 253, 312, 496, 814
AsuC2I CCSGG 1 cut(s) 383
AsuHPI GGTGA 3 cut(s) 371, 716, 866
AvaI CYCGRG 1 cut(s) 388
AvaII GGWCC 4 cut(s) 253, 312, 496, 814
BanII GRGCYC 1 cut(s) 789
BauI CACGAG 1 cut(s) 360
BbsI GAAGAC 1 cut(s) 714
BbvI GCAGC 1 cut(s) 892
BccI CCATC 2 cut(s) 677, 931
BceAI ACGGC 3 cut(s) 34, 68, 83
BclI TGATCA 1 cut(s) 298
BcnI CCSGG 1 cut(s) 383
BfaI CTAG 2 cut(s) 437, 740
BfoI RGCGCY 1 cut(s) 337
BisI GCNGC 1 cut(s) 881
BlsI GCNGC 1 cut(s) 882
Bme1390I CCNGG 1 cut(s) 383
Bme18I GGWCC 4 cut(s) 253, 312, 496, 814
BmeT110I CYCGRG 1 cut(s) 388
BmgT120I GGNCC 5 cut(s) 81, 253, 312, 496, 814
BmiI GGNNCC 4 cut(s) 22, 203, 497, 498
BmrFI CCNGG 1 cut(s) 383
BmsI GCATC 4 cut(s) 430, 761, 823, 869
BpiI GAAGAC 1 cut(s) 714
Bpu10I CCTNAGC 1 cut(s) 876
BpuEI CTTGAG 2 cut(s) 289, 787
BpuMI CCSGG 1 cut(s) 383
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse3DI GCAATG 1 cut(s) 500
BseGI GGATG 2 cut(s) 923, 982
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMI GCAATG 1 cut(s) 500
BseMII CTCAG 1 cut(s) 435
BseXI GCAGC 1 cut(s) 892
BshFI GGCC 1 cut(s) 83
BsiHKCI CYCGRG 1 cut(s) 388
BsiSI CCGG 2 cut(s) 24, 382
BslFI GGGAC 2 cut(s) 398, 509
BslI CCNNNNNNNGG 1 cut(s) 66
BsmFI GGGAC 2 cut(s) 398, 509
BsmI GAATGC 1 cut(s) 774
BsnI GGCC 1 cut(s) 83
BsoBI CYCGRG 1 cut(s) 388
Bsp1286I GDGCHC 1 cut(s) 789
Bsp143I GATC 5 cut(s) 298, 412, 606, 621, 661
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 1 cut(s) 436
BspLI GGNNCC 4 cut(s) 22, 203, 497, 498
BspPI GGATC 3 cut(s) 420, 614, 669
BsrDI GCAATG 1 cut(s) 500
BssMI GATC 5 cut(s) 298, 412, 606, 621, 661
BssSI CACGAG 1 cut(s) 360
Bst2BI CACGAG 1 cut(s) 360
Bst4CI ACNGT 2 cut(s) 95, 129
BstC8I GCNNGC 3 cut(s) 38, 885, 910
BstDEI CTNAG 2 cut(s) 444, 876
BstF5I GGATG 2 cut(s) 923, 982
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 5 cut(s) 301, 415, 609, 624, 664
BstMBI GATC 5 cut(s) 298, 412, 606, 621, 661
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstNSI RCATGY 1 cut(s) 912
BstSCI CCNGG 1 cut(s) 381
BstV1I GCAGC 1 cut(s) 892
BstV2I GAAGAC 1 cut(s) 714
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BsuRI GGCC 1 cut(s) 83
BtsCI GGATG 2 cut(s) 923, 982
Cac8I GCNNGC 3 cut(s) 38, 885, 910
CaiI CAGNNNCTG 1 cut(s) 836
CfoI GCGC 1 cut(s) 336
Cfr13I GGNCC 5 cut(s) 81, 253, 312, 496, 814
Csp6I GTAC 1 cut(s) 7
CviAII CATG 4 cut(s) 475, 826, 844, 909
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 2 cut(s) 444, 876
DpnI GATC 5 cut(s) 300, 414, 608, 623, 663
DpnII GATC 5 cut(s) 298, 412, 606, 621, 661
DraIII CACNNNGTG 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 789
Eco47I GGWCC 4 cut(s) 253, 312, 496, 814
Eco47III AGCGCT 1 cut(s) 335
Eco88I CYCGRG 1 cut(s) 388
EcoO109I RGGNCCY 2 cut(s) 312, 496
EcoRI GAATTC 1 cut(s) 158
EcoT22I ATGCAT 1 cut(s) 776
EcoT38I GRGCYC 1 cut(s) 789
FaeI CATG 4 cut(s) 478, 829, 847, 912
FalI AAGNNNNNCTT 6 cut(s) 162, 194, 301, 333, 849, 881
FaqI GGGAC 2 cut(s) 398, 509
FatI CATG 4 cut(s) 474, 825, 843, 908
FauNDI CATATG 1 cut(s) 535
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 1 cut(s) 881
FokI GGATG 1 cut(s) 910
FriOI GRGCYC 1 cut(s) 789
Fsp4HI GCNGC 1 cut(s) 881
FspBI CTAG 2 cut(s) 437, 740
GlaI GCGC 1 cut(s) 335
GluI GCNGC 1 cut(s) 881
HaeII RGCGCY 1 cut(s) 337
HaeIII GGCC 1 cut(s) 83
HapII CCGG 2 cut(s) 24, 382
HhaI GCGC 1 cut(s) 336
Hin1II CATG 4 cut(s) 478, 829, 847, 912
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 277
HinfI GANTC 4 cut(s) 367, 386, 731, 806
HpaII CCGG 2 cut(s) 24, 382
HphI GGTGA 3 cut(s) 371, 716, 866
Hpy188I TCNGA 4 cut(s) 417, 466, 589, 832
Hpy188III TCNNGA 6 cut(s) 306, 390, 437, 604, 728, 766
HpyAV CCTTC 1 cut(s) 303
HpyCH4III ACNGT 2 cut(s) 95, 129
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 9 cut(s) 228, 505, 560, 774, 799, 887, 908, 912, 932
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpyF3I CTNAG 2 cut(s) 444, 876
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 4 cut(s) 478, 829, 847, 912
HspAI GCGC 1 cut(s) 334
KflI GGGWCCC 1 cut(s) 496
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 5 cut(s) 298, 412, 606, 621, 661
LmnI GCTCC 1 cut(s) 26
Lsp1109I GCAGC 1 cut(s) 892
LweI GCATC 4 cut(s) 430, 761, 823, 869
MaeI CTAG 2 cut(s) 437, 740
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 546
MalI GATC 5 cut(s) 300, 414, 608, 623, 663
MboI GATC 5 cut(s) 298, 412, 606, 621, 661
MboII GAAGA 8 cut(s) 167, 182, 251, 368, 425, 582, 719, 815
MflI RGATCY 1 cut(s) 412
MhlI GDGCHC 1 cut(s) 789
MluCI AATT 4 cut(s) 158, 342, 399, 458
MlyI GAGTC 1 cut(s) 380
MmeI TCCRAC 1 cut(s) 508
MnlI CCTC 3 cut(s) 226, 325, 652
Mph1103I ATGCAT 1 cut(s) 776
MroXI GAANNNNTTC 3 cut(s) 174, 189, 574
MseI TTAA 2 cut(s) 53, 959
MspI CCGG 2 cut(s) 24, 382
MspR9I CCNGG 1 cut(s) 383
Mva1269I GAATGC 1 cut(s) 774
MwoI GCNNNNNNNGC 1 cut(s) 33
NciI CCSGG 1 cut(s) 383
NdeI CATATG 1 cut(s) 535
NdeII GATC 5 cut(s) 298, 412, 606, 621, 661
NlaIII CATG 4 cut(s) 478, 829, 847, 912
NlaIV GGNNCC 4 cut(s) 22, 203, 497, 498
NsiI ATGCAT 1 cut(s) 776
NspI RCATGY 1 cut(s) 912
PaeI GCATGC 1 cut(s) 912
PaeR7I CTCGAG 1 cut(s) 388
PctI GAATGC 1 cut(s) 774
PdmI GAANNNNTTC 3 cut(s) 174, 189, 574
PfeI GAWTC 3 cut(s) 367, 731, 806
PkrI GCNGC 1 cut(s) 882
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
PpuMI RGGWCCY 2 cut(s) 312, 496
PsiI TTATAA 1 cut(s) 654
Psp5II RGGWCCY 2 cut(s) 312, 496
PspN4I GGNNCC 4 cut(s) 22, 203, 497, 498
PspPI GGNCC 5 cut(s) 81, 253, 312, 496, 814
PspPPI RGGWCCY 2 cut(s) 312, 496
PstNI CAGNNNCTG 1 cut(s) 836
PsuI RGATCY 1 cut(s) 412
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SaqAI TTAA 2 cut(s) 53, 959
SatI GCNGC 1 cut(s) 881
Sau3AI GATC 5 cut(s) 298, 412, 606, 621, 661
Sau96I GGNCC 5 cut(s) 81, 253, 312, 496, 814
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 1 cut(s) 383
SduI GDGCHC 1 cut(s) 789
SetI ASST 9 cut(s) 8, 12, 207, 281, 314, 602, 718, 757, 823
SfaNI GCATC 4 cut(s) 430, 761, 823, 869
Sfr274I CTCGAG 1 cut(s) 388
SinI GGWCC 4 cut(s) 253, 312, 496, 814
SlaI CTCGAG 1 cut(s) 388
SmlI CTYRAG 3 cut(s) 304, 388, 766
SmoI CTYRAG 3 cut(s) 304, 388, 766
SphI GCATGC 1 cut(s) 912
Sse9I AATT 4 cut(s) 158, 342, 399, 458
SspI AATATT 3 cut(s) 430, 486, 615
SspMI CTAG 2 cut(s) 437, 740
StyD4I CCNGG 1 cut(s) 381
TaaI ACNGT 2 cut(s) 95, 129
TaiI ACGT 1 cut(s) 12
TaqI TCGA 3 cut(s) 269, 389, 982
TaqII GACCGA 1 cut(s) 831
TasI AATT 4 cut(s) 158, 342, 399, 458
TfiI GAWTC 3 cut(s) 367, 731, 806
Tru1I TTAA 2 cut(s) 53, 959
Tru9I TTAA 2 cut(s) 53, 959
TseI GCWGC 1 cut(s) 880
TspDTI ATGAA 4 cut(s) 183, 723, 774, 832
VpaK11BI GGWCC 4 cut(s) 253, 312, 496, 814
XapI RAATTY 2 cut(s) 158, 458
XbaI TCTAGA 1 cut(s) 436
XceI RCATGY 1 cut(s) 912
XhoI CTCGAG 1 cut(s) 388
XmnI GAANNNNTTC 3 cut(s) 174, 189, 574
XspI CTAG 2 cut(s) 437, 740
Zsp2I ATGCAT 1 cut(s) 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.