Rroxscaffold_1G00069620

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000112
Physical Location & Seq
Reverse (-)
90534297 .. 90535723
1427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00069620.1

Sequence Viewer

Length: 786 bp
ATGAGTGACGAAGAGTGTGAGCGGGAGTGCCTAAGAAATTGTTCTTGCACCGCATATTTGAGCACCGAAAATGAAGGGACTGTTGATTGCTTGACATGGTATGATGACTTGATGGACATTTTACTGTACACGAGCTTGGACATGATCTCTACGTTCCGGAAAATGGCGGAAGATCGAAGGTTTCTTGGAAAGGAGCGGTATGCGGCTATTCGAATACCGTTCGCTGTGCTAGCATTGGTACTAATCATTATGTTTCCATGTTGGTGGCGTAAGAAGAACAGGAACACAAAAGGTGGAAGCCGAGCTTGTGGAAAAACAGAGACACCCGAATTGCAATTTTTCGATCTTGACACAATAGTTGCAGCAACAGACCACTTCTCTCGTGTCAATGAACTTGGCCATGGTGGTTTTGGCTCTGTTTATAAGCTACCAAATGAACAGAAAGTTGTTGTGAAAAGATTGTCCCAAACTTCGGGACAAGGGATCGAAGAATTCAAAAATGAAGTTGCACTTATAGCAAGACTTCAACACAGGAATCTTGTGAAACTTTTAGGCTGTTGTATAAAGGGAGAAGAAAGGATGTTAGTGCTAGAATACATGCCTAACAAAAGCTTGAACTCCTTTCTTTTTGATAACACAAGACGGTCCTTCTTGGATTGGGAAAAGCGTTTTGAAATTATCAACGGGATTGCTCGTGGGATTTTGTATCTTCACCAAGACTCAAGATTGAGGATCATCCATAGAGATCTGAAAACTAGCAATATTCTTCTAGATGCTTTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

261

Amino Acids

30.26

Weight (kDa)

8.33

Isoelectric Point (pI)

55.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 3 - 40 4.3e-10 PAN-like domain
Pkinase PF00069 127 - 258 2e-25 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 129 - 258 5.1e-26 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 423
AccBSI CCGCTC 2 cut(s) 22, 196
AccIII TCCGGA 1 cut(s) 156
AciI CCGC 5 cut(s) 22, 51, 167, 196, 203
AclWI GGATC 2 cut(s) 491, 740
AcoI YGGCCR 1 cut(s) 397
AcsI RAATTY 1 cut(s) 491
AfaI GTAC 2 cut(s) 128, 240
AfiI CCNNNNNNNGG 2 cut(s) 163, 472
AgsI TTSAA 4 cut(s) 496, 527, 616, 674
AluBI AGCT 4 cut(s) 135, 305, 427, 612
AluI AGCT 4 cut(s) 135, 305, 427, 612
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 1 cut(s) 314
AlwI GGATC 2 cut(s) 491, 740
Aor13HI TCCGGA 1 cut(s) 156
AoxI GGCC 1 cut(s) 397
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 1 cut(s) 491
Asp700I GAANNNNTTC 1 cut(s) 40
AspS9I GGNCC 1 cut(s) 645
AsuHPI GGTGA 1 cut(s) 704
AsuII TTCGAA 1 cut(s) 211
AsuNHI GCTAGC 1 cut(s) 229
AvaII GGWCC 1 cut(s) 645
BalI TGGCCA 1 cut(s) 399
BauI CACGAG 3 cut(s) 130, 381, 693
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 374
BccI CCATC 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 314
BfaI CTAG 4 cut(s) 230, 590, 756, 770
BglII AGATCT 1 cut(s) 745
BisI GCNGC 2 cut(s) 204, 363
BlsI GCNGC 2 cut(s) 205, 364
Bme18I GGWCC 1 cut(s) 645
BmgT120I GGNCC 1 cut(s) 645
BmsI GCATC 1 cut(s) 763
BmtI GCTAGC 1 cut(s) 233
Bpu14I TTCGAA 1 cut(s) 211
BpuEI CTTGAG 1 cut(s) 706
BsaJI CCNNGG 1 cut(s) 400
BsaWI WCCGGW 1 cut(s) 156
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 472
BseAI TCCGGA 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 400
BseGI GGATG 2 cut(s) 585, 735
BseLI CCNNNNNNNGG 2 cut(s) 163, 472
BseXI GCAGC 1 cut(s) 374
BshFI GGCC 1 cut(s) 399
BsiHKAI GWGCWC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 157
BslFI GGGAC 3 cut(s) 91, 448, 489
BslI CCNNNNNNNGG 2 cut(s) 163, 472
BsmAI GTCTC 1 cut(s) 314
BsmFI GGGAC 3 cut(s) 91, 448, 489
BsnI GGCC 1 cut(s) 399
Bsp119I TTCGAA 1 cut(s) 211
Bsp1286I GDGCHC 1 cut(s) 65
Bsp13I TCCGGA 1 cut(s) 156
Bsp1407I TGTACA 1 cut(s) 126
Bsp143I GATC 6 cut(s) 144, 172, 343, 483, 732, 745
Bsp19I CCATGG 1 cut(s) 400
BspACI CCGC 5 cut(s) 22, 51, 167, 196, 203
BspANI GGCC 1 cut(s) 399
BspEI TCCGGA 1 cut(s) 156
BspOI GCTAGC 1 cut(s) 233
BspPI GGATC 2 cut(s) 491, 740
BspT104I TTCGAA 1 cut(s) 211
BsrBI CCGCTC 2 cut(s) 22, 196
BsrGI TGTACA 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 400
BssMI GATC 6 cut(s) 144, 172, 343, 483, 732, 745
BssSI CACGAG 3 cut(s) 130, 381, 693
BssT1I CCWWGG 1 cut(s) 400
Bst2BI CACGAG 3 cut(s) 130, 381, 693
Bst4CI ACNGT 4 cut(s) 82, 126, 219, 645
Bst6I CTCTTC 1 cut(s) 6
BstAUI TGTACA 1 cut(s) 126
BstBI TTCGAA 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 1 cut(s) 32
BstDSI CCRYGG 1 cut(s) 400
BstF5I GGATG 2 cut(s) 585, 735
BstKTI GATC 6 cut(s) 147, 175, 346, 486, 735, 748
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 6 cut(s) 144, 172, 343, 483, 732, 745
BstMWI GCNNNNNNNGC 2 cut(s) 230, 515
BstNSI RCATGY 1 cut(s) 601
BstV1I GCAGC 1 cut(s) 374
BstX2I RGATCY 1 cut(s) 745
BstXI CCANNNNNNTGG 1 cut(s) 264
BstYI RGATCY 1 cut(s) 745
BsuRI GGCC 1 cut(s) 399
BtgI CCRYGG 1 cut(s) 400
BtsCI GGATG 2 cut(s) 585, 735
Cac8I GCNNGC 1 cut(s) 231
Cfr13I GGNCC 1 cut(s) 645
Csp6I GTAC 2 cut(s) 127, 239
CviAII CATG 5 cut(s) 96, 142, 258, 401, 598
CviJI RGCY 9 cut(s) 135, 206, 300, 305, 399, 414, 427, 555, 612
CviKI_1 RGCY 9 cut(s) 135, 206, 300, 305, 399, 414, 427, 555, 612
CviQI GTAC 2 cut(s) 127, 239
DdeI CTNAG 1 cut(s) 32
DpnI GATC 6 cut(s) 146, 174, 345, 485, 734, 747
DpnII GATC 6 cut(s) 144, 172, 343, 483, 732, 745
EaeI YGGCCR 1 cut(s) 397
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
EciI GGCGGA 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 400
Eco47I GGWCC 1 cut(s) 645
EcoRI GAATTC 1 cut(s) 491
EcoT14I CCWWGG 1 cut(s) 400
ErhI CCWWGG 1 cut(s) 400
FaeI CATG 5 cut(s) 99, 145, 261, 404, 601
FalI AAGNNNNNCTT 4 cut(s) 289, 321, 495, 527
FaqI GGGAC 3 cut(s) 91, 448, 489
FatI CATG 5 cut(s) 95, 141, 257, 400, 597
FauI CCCGC 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 204, 363
FokI GGATG 2 cut(s) 592, 722
Fsp4HI GCNGC 2 cut(s) 204, 363
FspBI CTAG 4 cut(s) 230, 590, 756, 770
GluI GCNGC 2 cut(s) 204, 363
HaeIII GGCC 1 cut(s) 399
HapII CCGG 1 cut(s) 157
Hin1II CATG 5 cut(s) 99, 145, 261, 404, 601
HindIII AAGCTT 1 cut(s) 610
HinfI GANTC 2 cut(s) 535, 719
HpaII CCGG 1 cut(s) 157
HphI GGTGA 1 cut(s) 704
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 1 cut(s) 750
Hpy188III TCNNGA 5 cut(s) 157, 347, 474, 723, 770
Hpy8I GTNNAC 1 cut(s) 129
HpyAV CCTTC 3 cut(s) 68, 171, 658
HpyCH4III ACNGT 4 cut(s) 82, 126, 219, 645
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 4 cut(s) 48, 334, 362, 509
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 515
HpyF3I CTNAG 1 cut(s) 32
HpySE526I ACGT 1 cut(s) 152
Hsp92II CATG 5 cut(s) 99, 145, 261, 404, 601
Kpn2I TCCGGA 1 cut(s) 156
Kzo9I GATC 6 cut(s) 144, 172, 343, 483, 732, 745
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 3 cut(s) 170, 265, 517
Lsp1109I GCAGC 1 cut(s) 374
LweI GCATC 1 cut(s) 763
MaeI CTAG 4 cut(s) 230, 590, 756, 770
MaeII ACGT 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 5
MalI GATC 6 cut(s) 146, 174, 345, 485, 734, 747
MbiI CCGCTC 2 cut(s) 22, 196
MboI GATC 6 cut(s) 144, 172, 343, 483, 732, 745
MboII GAAGA 7 cut(s) 23, 182, 286, 500, 584, 701, 758
MflI RGATCY 1 cut(s) 745
MhlI GDGCHC 1 cut(s) 65
MlsI TGGCCA 1 cut(s) 399
MluCI AATT 5 cut(s) 37, 329, 335, 491, 675
MluNI TGGCCA 1 cut(s) 399
MlyI GAGTC 1 cut(s) 713
MnlI CCTC 1 cut(s) 723
Mox20I TGGCCA 1 cut(s) 399
MroI TCCGGA 1 cut(s) 156
MroXI GAANNNNTTC 1 cut(s) 40
MscI TGGCCA 1 cut(s) 399
MslI CAYNNNNRTG 1 cut(s) 262
Msp20I TGGCCA 1 cut(s) 399
MspI CCGG 1 cut(s) 157
MwoI GCNNNNNNNGC 2 cut(s) 230, 515
NcoI CCATGG 1 cut(s) 400
NdeII GATC 6 cut(s) 144, 172, 343, 483, 732, 745
NheI GCTAGC 1 cut(s) 229
NlaIII CATG 5 cut(s) 99, 145, 261, 404, 601
NmeAIII GCCGAG 1 cut(s) 326
NmuCI GTSAC 1 cut(s) 5
NspI RCATGY 1 cut(s) 601
NspV TTCGAA 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 40
PfeI GAWTC 1 cut(s) 535
PkrI GCNGC 2 cut(s) 205, 364
PleI GAGTC 1 cut(s) 713
PpsI GAGTC 1 cut(s) 713
PsiI TTATAA 1 cut(s) 423
PspPI GGNCC 1 cut(s) 645
PsuI RGATCY 1 cut(s) 745
RsaI GTAC 2 cut(s) 128, 240
RsaNI GTAC 2 cut(s) 127, 239
RseI CAYNNNNRTG 1 cut(s) 262
SatI GCNGC 2 cut(s) 204, 363
Sau3AI GATC 6 cut(s) 144, 172, 343, 483, 732, 745
Sau96I GGNCC 1 cut(s) 645
SchI GAGTC 1 cut(s) 713
SduI GDGCHC 1 cut(s) 65
SetI ASST 7 cut(s) 137, 155, 182, 295, 307, 429, 614
SfaNI GCATC 1 cut(s) 763
SfuI TTCGAA 1 cut(s) 211
SinI GGWCC 1 cut(s) 645
SmiMI CAYNNNNRTG 1 cut(s) 262
SmlI CTYRAG 1 cut(s) 721
SmoI CTYRAG 1 cut(s) 721
Sse9I AATT 5 cut(s) 37, 329, 335, 491, 675
SsiI CCGC 5 cut(s) 22, 51, 167, 196, 203
SspI AATATT 1 cut(s) 763
SspMI CTAG 4 cut(s) 230, 590, 756, 770
StyI CCWWGG 1 cut(s) 400
TaaI ACNGT 4 cut(s) 82, 126, 219, 645
TaiI ACGT 1 cut(s) 155
TaqI TCGA 4 cut(s) 175, 211, 342, 486
TasI AATT 5 cut(s) 37, 329, 335, 491, 675
TatI WGTACW 1 cut(s) 126
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 1 cut(s) 535
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 1 cut(s) 362
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 4 cut(s) 87, 405, 450, 516
VpaK11BI GGWCC 1 cut(s) 645
XapI RAATTY 1 cut(s) 491
XbaI TCTAGA 1 cut(s) 769
XceI RCATGY 1 cut(s) 601
XcmI CCANNNNNNNNNTGG 1 cut(s) 407
XmnI GAANNNNTTC 1 cut(s) 40
XspI CTAG 4 cut(s) 230, 590, 756, 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.