Rroxscaffold_1G00070520

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000112
Physical Location & Seq
Reverse (-)
91429796 .. 91431397
1602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00070520.1

Sequence Viewer

Length: 354 bp
ATGTCACCGCAGTACGCAGTATTTGGGAGATTTTCAACGAAATCTGATGTATTTAGTTTTGGGATCATAATGTTGGAGATTGTAAGTGGCCGGAAAAACAATGGTTCTGATCTAGAGGATCCTTCCATGAACTTGATAGGACGTTCATATCAGCCTAATGAAGTCATGAGATGCATACAAGTTGCGCTCTTGTGTGTACAAGAAGAATCAAAGGACCGACCTGCCATGTCAGCCATTGTTTTCATGTTGAGTGGTGAAGCATCTCCTCCATTGCCTAAGCATCCGGCATTTGTTTACGAAGAGATTCCGACGCTGATGTTGATCCATTACATGCAAACGGAACTGATTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

117

Amino Acids

13.14

Weight (kDa)

5.05

Isoelectric Point (pI)

59.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 81 6.6e-09 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 229
AciI CCGC 1 cut(s) 8
AclWI GGATC 4 cut(s) 71, 113, 126, 316
AcoI YGGCCR 1 cut(s) 88
AfaI GTAC 2 cut(s) 14, 198
AgsI TTSAA 1 cut(s) 36
AlwI GGATC 4 cut(s) 71, 113, 126, 316
AoxI GGCC 1 cut(s) 88
Asp700I GAANNNNTTC 2 cut(s) 303, 345
AspLEI GCGC 1 cut(s) 187
AspS9I GGNCC 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 266
AvaII GGWCC 1 cut(s) 214
BamHI GGATCC 1 cut(s) 118
BfaI CTAG 1 cut(s) 113
BfuAI ACCTGC 1 cut(s) 229
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 1 cut(s) 120
BmsI GCATC 3 cut(s) 161, 269, 289
Bpu10I CCTNAGC 1 cut(s) 276
BsaBI GATNNNNATC 1 cut(s) 320
Bse3DI GCAATG 1 cut(s) 269
Bse8I GATNNNNATC 1 cut(s) 320
BseGI GGATG 1 cut(s) 280
BseJI GATNNNNATC 1 cut(s) 320
BseMI GCAATG 1 cut(s) 269
BseRI GAGGAG 1 cut(s) 255
BshFI GGCC 1 cut(s) 90
BsiSI CCGG 2 cut(s) 91, 284
BsnI GGCC 1 cut(s) 90
Bsp1407I TGTACA 1 cut(s) 196
Bsp143I GATC 4 cut(s) 63, 109, 118, 321
BspACI CCGC 1 cut(s) 8
BspANI GGCC 1 cut(s) 90
BspHI TCATGA 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 120
BspMI ACCTGC 1 cut(s) 229
BspPI GGATC 4 cut(s) 71, 113, 126, 316
BsrDI GCAATG 1 cut(s) 269
BsrGI TGTACA 1 cut(s) 196
BssMI GATC 4 cut(s) 63, 109, 118, 321
Bst6I CTCTTC 1 cut(s) 294
BstAUI TGTACA 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 280
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 4 cut(s) 66, 112, 121, 324
BstMBI GATC 4 cut(s) 63, 109, 118, 321
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstNSI RCATGY 1 cut(s) 334
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BsuRI GGCC 1 cut(s) 90
BtsCI GGATG 1 cut(s) 280
BveI ACCTGC 1 cut(s) 229
CciI TCATGA 1 cut(s) 165
CfoI GCGC 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 214
CseI GACGC 1 cut(s) 319
Csp6I GTAC 2 cut(s) 13, 197
CviAII CATG 5 cut(s) 127, 166, 226, 244, 331
CviJI RGCY 3 cut(s) 90, 154, 233
CviKI_1 RGCY 3 cut(s) 90, 154, 233
CviQI GTAC 2 cut(s) 13, 197
DdeI CTNAG 1 cut(s) 276
DpnI GATC 4 cut(s) 65, 111, 120, 323
DpnII GATC 4 cut(s) 63, 109, 118, 321
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 214
EcoT22I ATGCAT 1 cut(s) 176
FaeI CATG 5 cut(s) 130, 169, 229, 247, 334
FaiI YATR 9 cut(s) 68, 128, 148, 167, 176, 227, 245, 332, 352
FatI CATG 5 cut(s) 126, 165, 225, 243, 330
FokI GGATG 1 cut(s) 267
FspBI CTAG 1 cut(s) 113
GlaI GCGC 1 cut(s) 186
HaeIII GGCC 1 cut(s) 90
HapII CCGG 2 cut(s) 91, 284
HgaI GACGC 1 cut(s) 319
HhaI GCGC 1 cut(s) 187
Hin1II CATG 5 cut(s) 130, 169, 229, 247, 334
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HinfI GANTC 3 cut(s) 206, 304, 346
HpaII CCGG 2 cut(s) 91, 284
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 2 cut(s) 197, 295
Hpy188I TCNGA 3 cut(s) 46, 109, 309
Hpy188III TCNNGA 2 cut(s) 113, 166
Hpy8I GTNNAC 2 cut(s) 197, 295
Hpy99I CGWCG 1 cut(s) 313
HpyAV CCTTC 1 cut(s) 132
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 2 cut(s) 174, 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 1 cut(s) 276
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 5 cut(s) 130, 169, 229, 247, 334
HspAI GCGC 1 cut(s) 185
Kzo9I GATC 4 cut(s) 63, 109, 118, 321
LpnPI CCDG 3 cut(s) 104, 234, 297
LweI GCATC 3 cut(s) 161, 269, 289
MaeI CTAG 1 cut(s) 113
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 1 cut(s) 3
MalI GATC 4 cut(s) 65, 111, 120, 323
MboI GATC 4 cut(s) 63, 109, 118, 321
MboII GAAGA 2 cut(s) 215, 311
MflI RGATCY 1 cut(s) 118
MmeI TCCRAC 2 cut(s) 54, 332
MnlI CCTC 2 cut(s) 109, 276
Mph1103I ATGCAT 1 cut(s) 176
MroXI GAANNNNTTC 2 cut(s) 303, 345
MspI CCGG 2 cut(s) 91, 284
MwoI GCNNNNNNNGC 1 cut(s) 230
NdeII GATC 4 cut(s) 63, 109, 118, 321
NlaIII CATG 5 cut(s) 130, 169, 229, 247, 334
NlaIV GGNNCC 1 cut(s) 120
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 1 cut(s) 176
NspI RCATGY 1 cut(s) 334
PagI TCATGA 1 cut(s) 165
PdmI GAANNNNTTC 2 cut(s) 303, 345
PfeI GAWTC 3 cut(s) 206, 304, 346
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 214
PsuI RGATCY 1 cut(s) 118
RsaI GTAC 2 cut(s) 14, 198
RsaNI GTAC 2 cut(s) 13, 197
Sau3AI GATC 4 cut(s) 63, 109, 118, 321
Sau96I GGNCC 1 cut(s) 214
SetI ASST 2 cut(s) 145, 223
SfaNI GCATC 3 cut(s) 161, 269, 289
SinI GGWCC 1 cut(s) 214
SsiI CCGC 1 cut(s) 8
SspMI CTAG 1 cut(s) 113
TaiI ACGT 1 cut(s) 145
TaqII GACCGA 1 cut(s) 231
TatI WGTACW 1 cut(s) 196
TfiI GAWTC 3 cut(s) 206, 304, 346
TseFI GTSAC 1 cut(s) 3
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 4 cut(s) 135, 143, 174, 232
TspGWI ACGGA 1 cut(s) 353
VpaK11BI GGWCC 1 cut(s) 214
XbaI TCTAGA 1 cut(s) 112
XceI RCATGY 1 cut(s) 334
XmnI GAANNNNTTC 2 cut(s) 303, 345
XspI CTAG 1 cut(s) 113
Zsp2I ATGCAT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.