RchiOBHm_Chr5g0046171

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000112
Physical Location & Seq
Forward (+)
42256143 .. 42260907
4765 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32419

Sequence Viewer

Length: 540 bp
ATGTCGCCAGAGTATGCAGTCTTTGGGAGATTTTCCAAAAAATCTGATGTCTTTAGTTTTGGGATCATAATGTTGGTGATAGTAACTGGCCAGAAAAACAGTGGCTCTGTTCTGGAGGATCCTTCCGTGAACTTAATAGGACGTGTTTGGGAGCTCTGGAGAGAAGGCAGAGCCTTAGATATTTTGGATTCGACACTGAAGTCATATGTCATGCCCCGAACCCAGGTATCGGCCCACTGGCTCAGACCCACTAAAGGATTTCGCCAAAATTACTTTCGGGCTCAAACAGTTACATCATATCAGCCTAATGAAGTCATGAGATGCATACAAGTTGTGCTCTTGTGTGTACAAGAAGATTCAAAGGATCGACCTGCCATGTCAACCATTGTTTTCATGTTGAGTGGTGAAGCATCTCCTCCATTGCCTATGCAGCCAACATTTGTTTACAGAAGAGATTCCGGCGTTGATGTTGATCCATTATTTCCGAAAGGATCTTATTCTATAAACGATTTGACAATAACTACAATGGAAGCTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

179

Amino Acids

20.28

Weight (kDa)

8.58

Isoelectric Point (pI)

37.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 199
Acc36I ACCTGC 1 cut(s) 379
AclWI GGATC 6 cut(s) 71, 113, 126, 372, 467, 499
AcoI YGGCCR 1 cut(s) 88
AcuI CTGAAG 1 cut(s) 218
AfaI GTAC 1 cut(s) 348
AfiI CCNNNNNNNGG 3 cut(s) 223, 229, 254
AflIII ACRYGT 1 cut(s) 142
AgsI TTSAA 1 cut(s) 360
AjiI CACGTC 1 cut(s) 143
AjnI CCWGG 1 cut(s) 222
AjuI GAANNNNNNNTTGG 2 cut(s) 258, 290
AluBI AGCT 2 cut(s) 154, 533
AluI AGCT 2 cut(s) 154, 533
Alw21I GWGCWC 2 cut(s) 156, 339
AlwI GGATC 6 cut(s) 71, 113, 126, 372, 467, 499
AoxI GGCC 2 cut(s) 88, 231
ApeKI GCWGC 1 cut(s) 430
Asp700I GAANNNNTTC 1 cut(s) 454
AspS9I GGNCC 1 cut(s) 232
AsuHPI GGTGA 2 cut(s) 88, 416
BaeI ACNNNNGTAYC 2 cut(s) 210, 243
BalI TGGCCA 1 cut(s) 90
BamHI GGATCC 1 cut(s) 118
BanII GRGCYC 2 cut(s) 156, 283
Bbv12I GWGCWC 2 cut(s) 156, 339
BbvI GCAGC 1 cut(s) 442
BciT130I CCWGG 1 cut(s) 224
BfuAI ACCTGC 1 cut(s) 379
BisI GCNGC 1 cut(s) 431
BlsI GCNGC 1 cut(s) 432
Bme1390I CCNGG 1 cut(s) 224
BmgBI CACGTC 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 2 cut(s) 311, 419
BpmI CTGGAG 2 cut(s) 134, 178
BsaBI GATNNNNATC 1 cut(s) 471
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 3 cut(s) 223, 229, 254
Bse1I ACTGG 2 cut(s) 91, 242
Bse3DI GCAATG 1 cut(s) 419
Bse8I GATNNNNATC 1 cut(s) 471
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 222
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 3 cut(s) 223, 229, 254
BseMI GCAATG 1 cut(s) 419
BseMII CTCAG 1 cut(s) 256
BseNI ACTGG 2 cut(s) 91, 242
BseRI GAGGAG 1 cut(s) 405
BseXI GCAGC 1 cut(s) 442
BshFI GGCC 2 cut(s) 90, 233
BsiHKAI GWGCWC 2 cut(s) 156, 339
BsiSI CCGG 1 cut(s) 459
BslI CCNNNNNNNGG 3 cut(s) 223, 229, 254
BsnI GGCC 2 cut(s) 90, 233
Bsp1286I GDGCHC 3 cut(s) 156, 283, 339
Bsp1407I TGTACA 1 cut(s) 346
Bsp143I GATC 5 cut(s) 63, 118, 364, 472, 491
BspANI GGCC 2 cut(s) 90, 233
BspCNI CTCAG 1 cut(s) 255
BspHI TCATGA 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 120
BspMI ACCTGC 1 cut(s) 379
BspPI GGATC 6 cut(s) 71, 113, 126, 372, 467, 499
BsrDI GCAATG 1 cut(s) 419
BsrGI TGTACA 1 cut(s) 346
BsrI ACTGG 2 cut(s) 91, 242
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 5 cut(s) 63, 118, 364, 472, 491
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 2 cut(s) 101, 289
Bst6I CTCTTC 1 cut(s) 445
BstAUI TGTACA 1 cut(s) 346
BstDEI CTNAG 2 cut(s) 175, 242
BstKTI GATC 5 cut(s) 66, 121, 367, 475, 494
BstMBI GATC 5 cut(s) 63, 118, 364, 472, 491
BstMWI GCNNNNNNNGC 1 cut(s) 430
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 442
BstX2I RGATCY 2 cut(s) 118, 491
BstYI RGATCY 2 cut(s) 118, 491
BsuRI GGCC 2 cut(s) 90, 233
BtrI CACGTC 1 cut(s) 143
BtsIMutI CAGTG 3 cut(s) 106, 194, 235
BveI ACCTGC 1 cut(s) 379
CciI TCATGA 1 cut(s) 315
Cfr13I GGNCC 1 cut(s) 232
Csp6I GTAC 1 cut(s) 347
CviAII CATG 4 cut(s) 211, 316, 376, 394
CviQI GTAC 1 cut(s) 347
DdeI CTNAG 2 cut(s) 175, 242
DpnI GATC 5 cut(s) 65, 120, 366, 474, 493
DpnII GATC 5 cut(s) 63, 118, 364, 472, 491
DrdI GACNNNNNNGTC 1 cut(s) 199
DseDI GACNNNNNNGTC 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 445
EarI CTCTTC 1 cut(s) 445
Ecl136II GAGCTC 1 cut(s) 154
Eco24I GRGCYC 2 cut(s) 156, 283
Eco53kI GAGCTC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 218
EcoICRI GAGCTC 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 222
EcoT22I ATGCAT 1 cut(s) 326
EcoT38I GRGCYC 2 cut(s) 156, 283
FaeI CATG 4 cut(s) 214, 319, 379, 397
FatI CATG 4 cut(s) 210, 315, 375, 393
FauNDI CATATG 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 431
FriOI GRGCYC 2 cut(s) 156, 283
Fsp4HI GCNGC 1 cut(s) 431
GluI GCNGC 1 cut(s) 431
GsuI CTGGAG 2 cut(s) 134, 178
HaeIII GGCC 2 cut(s) 90, 233
HapII CCGG 1 cut(s) 459
Hin1II CATG 4 cut(s) 214, 319, 379, 397
HincII GTYRAC 1 cut(s) 381
HindII GTYRAC 1 cut(s) 381
HinfI GANTC 3 cut(s) 188, 356, 455
HpaII CCGG 1 cut(s) 459
HphI GGTGA 2 cut(s) 88, 416
Hpy166II GTNNAC 4 cut(s) 130, 347, 381, 445
Hpy188I TCNGA 3 cut(s) 46, 245, 486
Hpy188III TCNNGA 3 cut(s) 113, 157, 316
Hpy8I GTNNAC 4 cut(s) 130, 347, 381, 445
HpyAV CCTTC 2 cut(s) 132, 158
HpyCH4III ACNGT 2 cut(s) 101, 289
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 3 cut(s) 17, 324, 430
HpyF10VI GCNNNNNNNGC 1 cut(s) 430
HpyF3I CTNAG 2 cut(s) 175, 242
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 4 cut(s) 214, 319, 379, 397
Kzo9I GATC 5 cut(s) 63, 118, 364, 472, 491
LmnI GCTCC 1 cut(s) 151
Lsp1109I GCAGC 1 cut(s) 442
LweI GCATC 2 cut(s) 311, 419
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 2 cut(s) 82, 289
MalI GATC 5 cut(s) 65, 120, 366, 474, 493
MboI GATC 5 cut(s) 63, 118, 364, 472, 491
MboII GAAGA 2 cut(s) 365, 462
MflI RGATCY 2 cut(s) 118, 491
MhlI GDGCHC 3 cut(s) 156, 283, 339
MlsI TGGCCA 1 cut(s) 90
MluCI AATT 1 cut(s) 268
MluNI TGGCCA 1 cut(s) 90
MnlI CCTC 2 cut(s) 109, 426
Mox20I TGGCCA 1 cut(s) 90
Mph1103I ATGCAT 1 cut(s) 326
MroXI GAANNNNTTC 1 cut(s) 454
MscI TGGCCA 1 cut(s) 90
MseI TTAA 1 cut(s) 134
Msp20I TGGCCA 1 cut(s) 90
MspI CCGG 1 cut(s) 459
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 430
NdeI CATATG 1 cut(s) 205
NdeII GATC 5 cut(s) 63, 118, 364, 472, 491
NlaIII CATG 4 cut(s) 214, 319, 379, 397
NlaIV GGNNCC 1 cut(s) 120
NsiI ATGCAT 1 cut(s) 326
PagI TCATGA 1 cut(s) 315
PdmI GAANNNNTTC 1 cut(s) 454
PfeI GAWTC 3 cut(s) 188, 356, 455
PkrI GCNGC 1 cut(s) 432
Psp124BI GAGCTC 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 232
PsuI RGATCY 2 cut(s) 118, 491
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
SacI GAGCTC 1 cut(s) 156
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 1 cut(s) 431
Sau3AI GATC 5 cut(s) 63, 118, 364, 472, 491
Sau96I GGNCC 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 3 cut(s) 156, 283, 339
SetI ASST 5 cut(s) 145, 156, 228, 373, 535
SfaNI GCATC 2 cut(s) 311, 419
Sse9I AATT 1 cut(s) 268
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 222
TaaI ACNGT 2 cut(s) 101, 289
TaiI ACGT 1 cut(s) 145
TaqI TCGA 3 cut(s) 191, 367, 535
TasI AATT 1 cut(s) 268
TatI WGTACW 1 cut(s) 346
TfiI GAWTC 3 cut(s) 188, 356, 455
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TscAI CASTG 3 cut(s) 106, 201, 242
TseI GCWGC 1 cut(s) 430
TspDTI ATGAA 2 cut(s) 324, 382
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 3 cut(s) 106, 201, 242
XcmI CCANNNNNNNNNTGG 1 cut(s) 98
XmnI GAANNNNTTC 1 cut(s) 454
Zsp2I ATGCAT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.