Rroxscaffold_2G00111820

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000112
Physical Location & Seq
Reverse (-)
36608992 .. 36610974
1983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00111820.1

Sequence Viewer

Length: 405 bp
ATGGTAAAAGTCAAGGAGCCAGACACATCGAAAGCTGCAAGGTTGGAAAGAATTATGAGTGCCAAAAAGTGCAAGCAGCAGTGCTTAAGAAGTTGTTATTGCACAGCATATATGAACATGGACATTGAAGGGCGCATTGATTGCTTGACATGGTATGGTGAGTTGCTGGACATCACAGAGCACACTGCAGTGGGACGAGATCTTTATGTTCATGTAGATCATATGGAGTCAGAGGCCGATGAACTTGAGGAAACGAGGAGACACCCAGAGTTACAGTTTTTCAATCTGAACACGCTAATAGATGCCACGGAAAACTTCTCTTCAGTGAATGAACTTTTTGGCTCAGTCAATAAGGTCTGGCAGCTGTGGAGAGAAGACAGAGCCTTAGAAATGTTGGACTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

134

Amino Acids

15.7

Weight (kDa)

4.89

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 3 - 58 1.1e-14 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 306
AflII CTTAAG 1 cut(s) 85
AgsI TTSAA 2 cut(s) 128, 283
AleI CACNNNNGTG 1 cut(s) 188
AluBI AGCT 2 cut(s) 35, 364
AluI AGCT 2 cut(s) 35, 364
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 1 cut(s) 253
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 3 cut(s) 35, 76, 361
AspLEI GCGC 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 3 cut(s) 22, 88, 373
BcoDI GTCTC 1 cut(s) 253
BfmI CTRYAG 1 cut(s) 186
BfrI CTTAAG 1 cut(s) 85
BglII AGATCT 1 cut(s) 199
BisI GCNGC 3 cut(s) 36, 77, 362
BlsI GCNGC 3 cut(s) 37, 78, 363
BmiI GGNNCC 1 cut(s) 18
BmsI GCATC 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 306
BseMII CTCAG 1 cut(s) 357
BseRI GAGGAG 1 cut(s) 271
BseXI GCAGC 3 cut(s) 22, 88, 373
BshFI GGCC 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 183
BslFI GGGAC 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 253
BsmFI GGGAC 1 cut(s) 207
BsnI GGCC 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 2 cut(s) 199, 217
BspANI GGCC 1 cut(s) 236
BspCNI CTCAG 1 cut(s) 356
BspHI TCATGA 1 cut(s) 401
BspLI GGNNCC 1 cut(s) 18
BspMAI CTGCAG 1 cut(s) 190
BspTI CTTAAG 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 2 cut(s) 199, 217
Bst4CI ACNGT 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 325
BstAFI CTTAAG 1 cut(s) 85
BstAPI GCANNNNNTGC 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 2 cut(s) 343, 385
BstDSI CCRYGG 1 cut(s) 306
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 2 cut(s) 202, 220
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 2 cut(s) 199, 217
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstSFI CTRYAG 1 cut(s) 186
BstV1I GCAGC 3 cut(s) 22, 88, 373
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BsuRI GGCC 1 cut(s) 236
BtgI CCRYGG 1 cut(s) 306
BtsI GCAGTG 3 cut(s) 86, 183, 195
BtsIMutI CAGTG 4 cut(s) 86, 183, 195, 330
Cac8I GCNNGC 1 cut(s) 74
CciI TCATGA 1 cut(s) 401
CfoI GCGC 1 cut(s) 135
CviAII CATG 4 cut(s) 118, 150, 212, 402
CviJI RGCY 6 cut(s) 19, 35, 236, 342, 364, 383
CviKI_1 RGCY 6 cut(s) 19, 35, 236, 342, 364, 383
DdeI CTNAG 2 cut(s) 343, 385
DpnI GATC 2 cut(s) 201, 219
DpnII GATC 2 cut(s) 199, 217
Eam1104I CTCTTC 1 cut(s) 325
EarI CTCTTC 1 cut(s) 325
Eco57I CTGAAG 1 cut(s) 306
FaeI CATG 4 cut(s) 121, 153, 215, 405
FaqI GGGAC 1 cut(s) 207
FatI CATG 4 cut(s) 117, 149, 211, 401
FauNDI CATATG 1 cut(s) 222
Fnu4HI GCNGC 3 cut(s) 36, 77, 362
Fsp4HI GCNGC 3 cut(s) 36, 77, 362
GlaI GCGC 1 cut(s) 134
GluI GCNGC 3 cut(s) 36, 77, 362
HaeIII GGCC 1 cut(s) 236
HhaI GCGC 1 cut(s) 135
Hin1II CATG 4 cut(s) 121, 153, 215, 405
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HinfI GANTC 2 cut(s) 227, 398
HphI GGTGA 1 cut(s) 170
Hpy188I TCNGA 2 cut(s) 232, 288
Hpy188III TCNNGA 1 cut(s) 402
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4V TGCA 4 cut(s) 38, 72, 102, 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
HpyF3I CTNAG 2 cut(s) 343, 385
Hsp92II CATG 4 cut(s) 121, 153, 215, 405
HspAI GCGC 1 cut(s) 133
Kzo9I GATC 2 cut(s) 199, 217
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 4 cut(s) 33, 152, 279, 343
Lsp1109I GCAGC 3 cut(s) 22, 88, 373
LweI GCATC 1 cut(s) 292
MaeIII GTNAC 1 cut(s) 270
MalI GATC 2 cut(s) 201, 219
MboI GATC 2 cut(s) 199, 217
MboII GAAGA 2 cut(s) 312, 386
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 1 cut(s) 51
MlyI GAGTC 2 cut(s) 236, 392
MmeI TCCRAC 2 cut(s) 24, 375
MnlI CCTC 3 cut(s) 226, 241, 249
MseI TTAA 1 cut(s) 86
MslI CAYNNNNRTG 1 cut(s) 188
MspA1I CMGCKG 1 cut(s) 364
MspCI CTTAAG 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 141
NdeI CATATG 1 cut(s) 222
NdeII GATC 2 cut(s) 199, 217
NlaIII CATG 4 cut(s) 121, 153, 215, 405
NlaIV GGNNCC 1 cut(s) 18
OliI CACNNNNGTG 1 cut(s) 188
PagI TCATGA 1 cut(s) 401
PkrI GCNGC 3 cut(s) 37, 78, 363
PleI GAGTC 2 cut(s) 235, 392
PpsI GAGTC 2 cut(s) 235, 392
PspN4I GGNNCC 1 cut(s) 18
PstI CTGCAG 1 cut(s) 190
PsuI RGATCY 1 cut(s) 199
PvuII CAGCTG 1 cut(s) 364
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 3 cut(s) 36, 77, 362
Sau3AI GATC 2 cut(s) 199, 217
SchI GAGTC 2 cut(s) 236, 392
SduI GDGCHC 1 cut(s) 183
SetI ASST 4 cut(s) 37, 44, 357, 366
SfaNI GCATC 1 cut(s) 292
SfcI CTRYAG 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 2 cut(s) 85, 245
SmoI CTYRAG 2 cut(s) 85, 245
Sse9I AATT 1 cut(s) 51
TaaI ACNGT 1 cut(s) 276
TaqI TCGA 1 cut(s) 29
TasI AATT 1 cut(s) 51
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 4 cut(s) 86, 190, 195, 330
TseI GCWGC 3 cut(s) 35, 76, 361
TspDTI ATGAA 4 cut(s) 128, 200, 255, 345
TspGWI ACGGA 1 cut(s) 323
TspRI CASTG 4 cut(s) 86, 190, 195, 330
Vha464I CTTAAG 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.