Rh5CG340500

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000112
Physical Location & Seq
Reverse (-)
39038652 .. 39039102
451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG340500.1

Sequence Viewer

Length: 378 bp
ATGTTGGAGATTGTAAGTGGCCAGAAAAACAATGGTTCTGATCTGGAGGATCCTTCCGTGAACTTAATAGGACGTGTATGGGAGCTCTGGAGAGAAGGCAGAGCCTTAGATATTGTGGATTCAACACTGAAGTCATATCATCCAAATGAAGCCATGAGATGCATACAAGTTGGGCTCTTGTGTGTACAAGAAGATCCGATGGACCGACCTGCCATGTCAGCCATTGTTTTCATGTTGAGTGATGAAGCATCTCGTCCATTGCCAAAGCAGCCGGCAGTTGTTTACAGAAGAAATTTCGGCACTGATGTTGATCCATTACTTTCAAACAGATCTTTTTCTAGAAATGACTTGACAGTAACTACAATGGAAGCTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

125

Amino Acids

14.09

Weight (kDa)

4.95

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000112)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03320 FvH4_3g03322 FvH4_3g03323 FvH4_3g03340 FvH4_3g03350 FvH4_3g03351 FvH4_3g03370 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03390 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g03410 FvH4_3g06140 FvH4_6g00257 FvH4_6g00257 FvH4_6g00270 FvH4_6g00300 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800 FvH4_6g20800
malus_domestica MD05G1232700.v1.1 MD05G1327700.v1.1 MD05G1327800.v1.1 MD05G1327900.v1.1 MD05G1328000.v1.1 MD05G1328200.v1.1 MD05G1328300.v1.1 MD05G1328500.v1.1 MD05G1332000.v1.1 MD05G1332100.v1.1 MD10G1307600.v1.1 MD10G1307800.v1.1
prunus_persica Prupe.4G031900_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032000_v2.0.a1 Prupe.4G032100_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1 Prupe.4G032200_v2.0.a1
pyrus_communis pycom05g30180 pycom05g30190 pycom05g30200 pycom05g30210 pycom10g25920 pycom10g25930
rosa_chinensis RchiOBHm_Chr2g0130831 RchiOBHm_Chr2g0132531 RchiOBHm_Chr2g0132541 RchiOBHm_Chr3g0455681 RchiOBHm_Chr3g0476681 RchiOBHm_Chr3g0476761 RchiOBHm_Chr3g0476771 RchiOBHm_Chr3g0476791 RchiOBHm_Chr3g0476801 RchiOBHm_Chr3g0476811 RchiOBHm_Chr4g0413551 RchiOBHm_Chr4g0413561 RchiOBHm_Chr5g0002911 RchiOBHm_Chr5g0005071 RchiOBHm_Chr5g0005101 RchiOBHm_Chr5g0005111 RchiOBHm_Chr5g0005121 RchiOBHm_Chr5g0005131 RchiOBHm_Chr5g0005141 RchiOBHm_Chr5g0005161 RchiOBHm_Chr5g0005171 RchiOBHm_Chr5g0006341 RchiOBHm_Chr5g0046161 RchiOBHm_Chr5g0046171 RchiOBHm_Chr5g0046181 RchiOBHm_Chr5g0046221 RchiOBHm_Chr5g0046231 RchiOBHm_Chr7g0224061 RchiOBHm_Chr7g0224081 RchiOBHm_Chr7g0224101 RchiOBHm_Chr7g0224111 RchiOBHm_Chr7g0224121
rosa_laevigata RLG00000010193 RLG00000019146 RLG00000019148 RLG00000019149 RLG00000019150 RLG00000023750 RLG00000023751 RLG00000023753 RLG00000029486 RLG00000031068 RLG00000031069 RLG00000031284 RLG00000031285 RLG00000031286 RLG00000031289 RLG00000031290 RLG00000031291 RLG00000031292 RLG00000031293 RLG00000031294 RLG00000031295 RLG00000031296 RLG00000031297 RLG00000031363 RLG00000032618 RLG00000032619
rosa_multiflora Rmu_co8147584.1_g000001 Rmu_co8205828.1_g000001 Rmu_co8373645.1_g000001 Rmu_co8407679.1_g000001 Rmu_co8452561.1_g000001 Rmu_sc0001035.1_g000076 Rmu_sc0001884.1_g000026 Rmu_sc0001884.1_g000027 Rmu_sc0001884.1_g000035 Rmu_sc0002157.1_g000026 Rmu_sc0002399.1_g000006 Rmu_sc0002399.1_g000007 Rmu_sc0002883.1_g000010 Rmu_sc0003629.1_g000014 Rmu_sc0003884.1_g000004 Rmu_sc0007865.1_g000005 Rmu_sc0008085.1_g000013 Rmu_sc0008085.1_g000014 Rmu_sc0008085.1_g000016 Rmu_sc0008085.1_g000018 Rmu_sc0008432.1_g000004 Rmu_sc0008714.1_g000002 Rmu_sc0009296.1_g000008 Rmu_sc0009296.1_g000009 Rmu_sc0009296.1_g000011 Rmu_sc0010281.1_g000001 Rmu_sc0010281.1_g000002 Rmu_sc0010714.1_g000011 Rmu_sc0010714.1_g000016 Rmu_sc0011169.1_g000001 Rmu_sc0011169.1_g000007 Rmu_sc0013603.1_g000006 Rmu_sc0020478.1_g000003 Rmu_sc0020478.1_g000007 Rmu_sc0025106.1_g000012 Rmu_sc0032709.1_g000001 Rmu_sc0033028.1_g000001
rosa_roxburghii Rroxscaffold_1G00069570 Rroxscaffold_1G00069610 Rroxscaffold_1G00069620 Rroxscaffold_1G00070480 Rroxscaffold_1G00070490 Rroxscaffold_1G00070500 Rroxscaffold_1G00070510 Rroxscaffold_1G00070520 Rroxscaffold_1G00070530 Rroxscaffold_1G00070540 Rroxscaffold_1G00070550 Rroxscaffold_1G00070590 Rroxscaffold_1G00072950 Rroxscaffold_1G00073080 Rroxscaffold_2G00111810 Rroxscaffold_2G00111820 Rroxscaffold_2G00113530 Rroxscaffold_2G00113870 Rroxscaffold_6G00405010 Rroxscaffold_6G00405020 Rroxscaffold_6G00423590 Rroxscaffold_6G00424100
rosa_rugosa Rorug02G0293200 Rorug02G0293300 Rorug02G0293400 Rorug02G0305900 Rorug02G0305900 Rorug03G0009100 Rorug03G0157000 Rorug03G0157000 Rorug03G0304900 Rorug04G0400500 Rorug04G0415200 Rorug04G0415300 Rorug04G0415400 Rorug04G0415500 Rorug04G0421100 Rorug05G0068000 Rorug05G0068100 Rorug05G0068200 Rorug05G0068500 Rorug05G0224600 Rorug05G0224700
rosa_samantha Rh2CG331700 Rh2CG341600 Rh2CG341700 Rh2DG381200 Rh3DG071200 Rh3DG233400 Rh3DG233500 Rh3DG233600 Rh5AG043100 Rh5CG026000 Rh5CG047700 Rh5CG047800 Rh5CG047900 Rh5CG048000 Rh5CG048100 Rh5CG048300 Rh5CG056500 Rh5CG340500 Rh5CG340700 Rh5CG340800 Rh7AG365000
rosa_wichuraiana Rw0G002360 Rw0G002370 Rw0G012520 Rw0G018230 Rw0G019190 Rw2G027480 Rw2G029150 Rw3G005520 Rw3G005880 Rw3G005890 Rw3G018840 Rw3G018850 Rw3G018870 Rw3G018880 Rw3G020740 Rw5G002190 Rw5G004180 Rw5G004190 Rw5G004890 Rw5G013960 Rw5G014000 Rw5G028610 Rw7G030910 Rw7G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 217
AclWI GGATC 4 cut(s) 44, 57, 188, 305
AcoI YGGCCR 1 cut(s) 19
AcsI RAATTY 1 cut(s) 292
AcuI CTGAAG 1 cut(s) 149
AfaI GTAC 1 cut(s) 186
AflIII ACRYGT 1 cut(s) 73
AgsI TTSAA 2 cut(s) 123, 324
AjiI CACGTC 1 cut(s) 74
AluBI AGCT 2 cut(s) 85, 371
AluI AGCT 2 cut(s) 85, 371
Alw21I GWGCWC 1 cut(s) 87
AlwI GGATC 4 cut(s) 44, 57, 188, 305
AoxI GGCC 1 cut(s) 19
ApeKI GCWGC 1 cut(s) 268
ApoI RAATTY 1 cut(s) 292
AspS9I GGNCC 1 cut(s) 202
AvaII GGWCC 1 cut(s) 202
BalI TGGCCA 1 cut(s) 21
BamHI GGATCC 1 cut(s) 49
BanII GRGCYC 2 cut(s) 87, 177
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 280
BccI CCATC 1 cut(s) 193
BfaI CTAG 1 cut(s) 339
BfuAI ACCTGC 1 cut(s) 217
BglII AGATCT 1 cut(s) 329
BisI GCNGC 1 cut(s) 269
BlsI GCNGC 1 cut(s) 270
Bme18I GGWCC 1 cut(s) 202
BmgBI CACGTC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 51
BmsI GCATC 2 cut(s) 149, 257
BpmI CTGGAG 2 cut(s) 65, 109
BsaBI GATNNNNATC 1 cut(s) 309
Bse118I RCCGGY 1 cut(s) 271
Bse3DI GCAATG 1 cut(s) 257
Bse8I GATNNNNATC 1 cut(s) 309
BseGI GGATG 1 cut(s) 139
BseJI GATNNNNATC 1 cut(s) 309
BseMI GCAATG 1 cut(s) 257
BseXI GCAGC 1 cut(s) 280
BshFI GGCC 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 87
BsiSI CCGG 1 cut(s) 272
BsnI GGCC 1 cut(s) 21
Bsp1286I GDGCHC 2 cut(s) 87, 177
Bsp1407I TGTACA 1 cut(s) 184
Bsp143I GATC 5 cut(s) 40, 49, 193, 310, 329
BspANI GGCC 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 51
BspMI ACCTGC 1 cut(s) 217
BspPI GGATC 4 cut(s) 44, 57, 188, 305
BsrDI GCAATG 1 cut(s) 257
BsrFI RCCGGY 1 cut(s) 271
BsrGI TGTACA 1 cut(s) 184
BssAI RCCGGY 1 cut(s) 271
BssMI GATC 5 cut(s) 40, 49, 193, 310, 329
Bst4CI ACNGT 1 cut(s) 355
BstAUI TGTACA 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 1 cut(s) 106
BstF5I GGATG 1 cut(s) 139
BstKTI GATC 5 cut(s) 43, 52, 196, 313, 332
BstMBI GATC 5 cut(s) 40, 49, 193, 310, 329
BstMWI GCNNNNNNNGC 2 cut(s) 218, 268
BstV1I GCAGC 1 cut(s) 280
BstX2I RGATCY 3 cut(s) 49, 193, 329
BstYI RGATCY 3 cut(s) 49, 193, 329
BsuRI GGCC 1 cut(s) 21
BtrI CACGTC 1 cut(s) 74
BtsCI GGATG 1 cut(s) 139
BtsIMutI CAGTG 2 cut(s) 125, 300
BveI ACCTGC 1 cut(s) 217
Cac8I GCNNGC 1 cut(s) 273
Cfr10I RCCGGY 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 202
Csp6I GTAC 1 cut(s) 185
CviAII CATG 3 cut(s) 154, 214, 232
CviJI RGCY 8 cut(s) 21, 85, 104, 152, 175, 221, 271, 371
CviKI_1 RGCY 8 cut(s) 21, 85, 104, 152, 175, 221, 271, 371
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 1 cut(s) 106
DpnI GATC 5 cut(s) 42, 51, 195, 312, 331
DpnII GATC 5 cut(s) 40, 49, 193, 310, 329
EaeI YGGCCR 1 cut(s) 19
Ecl136II GAGCTC 1 cut(s) 85
Eco24I GRGCYC 2 cut(s) 87, 177
Eco47I GGWCC 1 cut(s) 202
Eco53kI GAGCTC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 85
EcoT22I ATGCAT 1 cut(s) 164
EcoT38I GRGCYC 2 cut(s) 87, 177
FaeI CATG 3 cut(s) 157, 217, 235
FaiI YATR 6 cut(s) 79, 136, 155, 164, 215, 233
FatI CATG 3 cut(s) 153, 213, 231
Fnu4HI GCNGC 1 cut(s) 269
FokI GGATG 1 cut(s) 126
FriOI GRGCYC 2 cut(s) 87, 177
Fsp4HI GCNGC 1 cut(s) 269
FspBI CTAG 1 cut(s) 339
GluI GCNGC 1 cut(s) 269
GsuI CTGGAG 2 cut(s) 65, 109
HaeIII GGCC 1 cut(s) 21
HapII CCGG 1 cut(s) 272
Hin1II CATG 3 cut(s) 157, 217, 235
HinfI GANTC 1 cut(s) 119
HpaII CCGG 1 cut(s) 272
Hpy166II GTNNAC 3 cut(s) 61, 185, 283
Hpy188I TCNGA 2 cut(s) 40, 198
Hpy188III TCNNGA 3 cut(s) 44, 88, 339
Hpy8I GTNNAC 3 cut(s) 61, 185, 283
HpyAV CCTTC 2 cut(s) 63, 89
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 1 cut(s) 162
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 268
HpyF3I CTNAG 1 cut(s) 106
HpySE526I ACGT 1 cut(s) 73
Hsp92II CATG 3 cut(s) 157, 217, 235
KroI GCCGGC 1 cut(s) 271
KroNI GCCGGC 1 cut(s) 273
Kzo9I GATC 5 cut(s) 40, 49, 193, 310, 329
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 5 cut(s) 29, 35, 73, 222, 285
Lsp1109I GCAGC 1 cut(s) 280
LweI GCATC 2 cut(s) 149, 257
MaeI CTAG 1 cut(s) 339
MaeII ACGT 1 cut(s) 73
MaeIII GTNAC 1 cut(s) 355
MalI GATC 5 cut(s) 42, 51, 195, 312, 331
MboI GATC 5 cut(s) 40, 49, 193, 310, 329
MboII GAAGA 2 cut(s) 203, 300
MflI RGATCY 3 cut(s) 49, 193, 329
MhlI GDGCHC 2 cut(s) 87, 177
MlsI TGGCCA 1 cut(s) 21
MluCI AATT 1 cut(s) 292
MluNI TGGCCA 1 cut(s) 21
MnlI CCTC 1 cut(s) 40
Mox20I TGGCCA 1 cut(s) 21
Mph1103I ATGCAT 1 cut(s) 164
MroNI GCCGGC 1 cut(s) 271
MscI TGGCCA 1 cut(s) 21
MseI TTAA 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 144
Msp20I TGGCCA 1 cut(s) 21
MspI CCGG 1 cut(s) 272
MwoI GCNNNNNNNGC 2 cut(s) 218, 268
NaeI GCCGGC 1 cut(s) 273
NdeII GATC 5 cut(s) 40, 49, 193, 310, 329
NgoMIV GCCGGC 1 cut(s) 271
NlaIII CATG 3 cut(s) 157, 217, 235
NlaIV GGNNCC 1 cut(s) 51
NsiI ATGCAT 1 cut(s) 164
PdiI GCCGGC 1 cut(s) 273
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 270
Psp124BI GAGCTC 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 202
PsuI RGATCY 3 cut(s) 49, 193, 329
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
RseI CAYNNNNRTG 1 cut(s) 144
SacI GAGCTC 1 cut(s) 87
SaqAI TTAA 1 cut(s) 65
SatI GCNGC 1 cut(s) 269
Sau3AI GATC 5 cut(s) 40, 49, 193, 310, 329
Sau96I GGNCC 1 cut(s) 202
SduI GDGCHC 2 cut(s) 87, 177
SetI ASST 4 cut(s) 76, 87, 211, 373
SfaNI GCATC 2 cut(s) 149, 257
SinI GGWCC 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 144
Sse9I AATT 1 cut(s) 292
SspMI CTAG 1 cut(s) 339
SstI GAGCTC 1 cut(s) 87
TaaI ACNGT 1 cut(s) 355
TaiI ACGT 1 cut(s) 76
TaqI TCGA 1 cut(s) 373
TaqII GACCGA 1 cut(s) 219
TasI AATT 1 cut(s) 292
TatI WGTACW 1 cut(s) 184
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TscAI CASTG 2 cut(s) 132, 307
TseI GCWGC 1 cut(s) 268
TspDTI ATGAA 3 cut(s) 162, 220, 258
TspGWI ACGGA 1 cut(s) 46
TspRI CASTG 2 cut(s) 132, 307
VpaK11BI GGWCC 1 cut(s) 202
XapI RAATTY 1 cut(s) 292
XbaI TCTAGA 1 cut(s) 338
XcmI CCANNNNNNNNNTGG 1 cut(s) 29
XspI CTAG 1 cut(s) 339
Zsp2I ATGCAT 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.